Biology of extreme radiation resistance: The way of Deinococcus radiodurans

Cold Spring Harbor Perspectives in Biology

Volumn 5, Issue 7, 2013, Pages

  Krisko, Anita ^a   Radman, Miroslav ^a,b  

^a Mediterranean Institute for Life Sciences   (Croatia)

^b UNIVERSITÉ PARIS DESCARTES   (France)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN; PROTEOME;

ARTICLE; BACTERIAL GENOME; DEINOCOCCUS; DNA DAMAGE; DNA REPAIR; GENETICS; OXIDATION REDUCTION REACTION; RADIATION EXPOSURE;

DEINOCOCCUS; DNA DAMAGE; DNA REPAIR; GENOME, BACTERIAL; OXIDATION-REDUCTION; PROTEINS; PROTEOME;

BACTERIA (MICROORGANISMS); DEINOCOCCUS RADIODURANS;

EID: 84879758470     PISSN: None     EISSN: 19430264     Source Type: Journal    
DOI: 10.1101/cshperspect.a012765     Document Type: Article

References (37)

1. Anderson AW, Nordan HC, Cain RF, Parrish G, Duggan D. 1956. Studies on a radio-resistant micrococcus. I. Isolation, morphology, cultural characteristics, and resistance to g radiation. Food Technol 10: 575-577.
2. Bayot A, Gareil M, Rogowska-Wrzesinska A, Roepstorff P, Friguet B, Bulteau AL. 2010. Identification of novel oxidized protein substrates and physiological partners of the mitochondrial ATP-dependent Lon-like protease Pim1. J Biol Chem 285: 11445-11457.
3. Blasius M, Sommer S, Huebscher U. 2008. Deinococcus radiodurans: What belongs to the survival kit? Crit Rev Biochem Mol Biol 43: 221-238.
4. Bonura T, Smith KC. 1976. The involvement of indirect effects in cell-killing and DNA double-strand breakage in g-irradiated Escherichia coli K-12. Int J Rad Biol 29: 293-296.
5. Burrell AD, Feldschreiber P, Dean CJ. 1971. DNA-membrane association and the repair of double breaks in XirradiatedMicrococcus radiodurans. Biochim Biophys Acta 247: 38-53.
6. Cox MM, Battista JR. 2005. Deinococcus radiodurans-The consummate survivor. Nat Rev Microbiol 3: 882-892.
7. Daly MJ. 2009. A new perspective on radiation resistance based on Deinococcus radiodurans. Nat Rev Microbiol 7: 237-245.
8. Daly MJ, Gaidamakova EK, Matrosova VY, Vasilenko A, Zhai M, Leapman RD, Lai B, Ravel B, Li S-MW, Kemner KM, et al. 2007. Protein oxidation implicated as the primary determinant of bacterial radioresistance. PLoS Biol 5: e92.
9. Daly MJ, Gaidamakova EK, Matrosova VY, Kiang JG, Fukumoto R, Lee D-Y, Wehr NB, Viteri GA, Berlett BS, Levine RL. 2010. Small-molecule antioxidant proteomeshields in Deinococcus radiodurans. PLoS ONE 5: e12570.
10. de Groot A, Dulermo R, Ortet P, Blanchard L, Guérin P, Fernandez B, Vacherie B, Dossat C, Jolivet E, Siguier P, et al. 2009. Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti. PLoS Genet 5: e1000434.
11. Duggan de, Anderson AW, Elliker PR. 1963. Inactivation of the radiation-resistant spoilage bacterium Micrococcus radiodurans. I. Radiation inactivation rates in three meat substrates and in buffer. Appl Microbiol 11: 398-403.
12. Friedberg EC, McDaniel LD, Schultz RA. 2004. The role of endogenous and exogenous DNA damage and mutagenesis. Curr Opin Genet Dev 14: 5-10.
13. Gérard E, Jolivet E, Prieur D, Forterre P. 2001. DNA protection mechanisms are not involved in the radioresistance of the hyperthermophilic archaea Pyrococcus abyssi and P. furiosus. Mol Genet Genomics 266: 72-78.
14. Ghosal D, Omelchenko MV, Gaidamakova EK, Matrosova VY, Vasilenko A, Venkateswaran A, Zhai M, Kostandarithes HM, Brim H, Makarova KS, et al. 2005. How radiation kills cells: Survival of Deinococcus radiodurans and Shewanella oneidensis under oxidative stress. FEMS Microbiol Rev 29: 361-375.
15. Harris DR, Pollock SV, Wood EA, Goiffon RJ, Klingele AJ, Cabot EL, Schackwitz W, Martin J, Eggington J, Durfee TJ, et al. 2009. Directed evolution of ionizing radiation resistance in Escherichia coli. J Bacteriol 191: 5240-5252.
16. Ji HF. 2010. Insight into the strong antioxidant activity of deinoxanthin, a unique carotenoid in Deinococcus radiodurans. Int J Mol Sci 11: 4506-4510.
17. Jung S, Joe M, Im S, Kim D, Lim S. 2010. Comparison of the genomes of deinococcal species using oligonucleotide microarrays. J Microbiol Biotechnol 20: 1637-1646.
18. Krisko A, Radman M. 2010. Protein damage and death by radiation in Escherichia coli and Deinococcus radiodurans. Proc Natl Acad Sci 107: 14373-14377.
19. Krisko A, Leroy M, Radman M, Meselson M. 2012. Extreme anti-oxidant protection against ionizing radiation in bdelloid rotifers. Proc Natl Acad Sci 109: 2354-2357.
20. Lemee L, Peuchant E, Clerc M, Brunner M, Pfander H. 1997. Deinoxanthin: A new carotenoid isolated from Deinococcus radiodurans. Tetrahedron 53: 919-926.
21. Liu Y, Zhou J, Omelchenko MV, Beliaev AS, Venkateswaran A, Stair J, Wu L, Thompson DK, Xu D, Rogozin IB, et al. 2003. Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation. Proc Natl Acad Sci 100: 4191-4196.
22. Lown JW, Sim SK, Chen HH. 1978. Hydroxyl radical production by free and DNA-bound aminoquinone antibiotics and its role in DNA degradation. Electron spin resonance detection of hydroxyl radicals by spin trapping. Can J Biochem 56: 1042-1047.
23. Makarova KS, Aravind L, Daly MJ, Koonin EV. 2000. Specific expansion of protein families in the radioresistant bacterium Deinococcus radiodurans. Genetica 108: 25-34.
24. Mattimore V, Battista JR. 1996. Radioresistance of Deinococcus radiodurans: Functions necessary to survive ionizing radiation are also necessary to survive prolonged desiccation. J Bacteriol 178: 633-637.
25. Misra HS, Rajpurohit YS, Khairnar NP. 2012. Pyrroloquinoline-quinone and its versatile roles in biological processes. J Biosci 37: 313-325.
26. Oliver CN, Ahn B, Moerman EJ, Goldstein S, Stadtman ER. 1987. Age-related changes in oxidized proteins. J Biol Chem 262: 5488-5491.
27. Omelchenko MV, Wolf YI, Gaidamakova EK, Matrosova VY, Vasilenko A, Zhai M, Daly MJ, Koonin EV, Makarova KS. 2005. Comparative genomics of Thermus thermophilus and Deinococcus radiodurans: Divergent routes of adap-tation to thermophily and radiation resistance. BMC Evol Biol 5: 57.
28. Pavlov AK, Kalinin VL, Konstaninov AN, Shelegedin VN, Pavlov AA. 2006. Was Earth ever infected by Martian Biota? Clues from radioresistant bacteria. Astrobiology 6: 911-918.
29. Richardson RB. 2009. Ionizing radiation and aging: Rejuvenating an old idea. Aging 1: 887-902.
30. Sas AA, Snieder H, Korf J. 2012. Gompertz' survivorship law as an intrinsic principle of aging. Med Hypotheses 78: 659-663.
31. Servant P, Jolivet E, Bentchikou E, Mennecier S, Bailone A, Sommer S. 2007. The ClpPX protease is required for radioresistance and regulates cell division after g-irradiation in Deinococcus radiodurans. Mol Microbiol 66: 1231-1239.
32. Slade D, Radman M. 2011. Oxidative stress resistance in Deinococcus radiodurans. Microbiol Mol Biol Rev 75: 133-191.
33. Slade D, Lindner AB, Paul G, Radman M. 2009. Recombination and replication inDNA repair of heavily irradiated Deinococcus radiodurans. Cell 136: 1044-1055.
34. Smole Z, Nikolic N, Supek F, Šmuc T, Sbalzarini IF, Krisko A. 2011. Proteome sequence features carry signatures of the environmental niche of prokaryotes. BMC Evol Biol 11: 26.
35. White O, Eisen JA, Heidelberg JF, Hickey EK, Peterson JD, Dodson RJ, Haft DH, Gwinn ML, Nelson WC, Richardson DL, et al. 1999. Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1. Science 286: 1571-1577.
36. Zahradka K, Slade D, Bailone A, Sommer S, Averbeck D, Petranovic M, Lindner AB, Radman M. 2006. Reassembly of shattered chromosomes in Deinococcus radiodurans. Nature 443: 569-573.
37. Zhang C, Wei J, Zheng Z, Ying N, Sheng D, Hua Y. 2005. Proteomic analysis of Deinococcus radiodurans recovering from g-irradiation. Proteomics 5: 138-143.