An alternative method to determine the 5' extremities of non-segmented, negative sense RNA viral genomes using positive replication intermediate 3' tailing: Application to two members of the Paramyxoviridae family

Journal of Virological Methods

Volumn 193, Issue 1, 2013, Pages 121-127

  Brown, Paul A ^a   Briand, Francois Xavier ^a   Guionie, Olivier ^a   Lemaitre, Evelyne ^a   Courtillon, Celine ^a   Henry, Aurelie ^a   Jestin, Véronique ^a   Eterradossi, Nicolas ^a  

^a FRENCH AGENCY FOR FOOD   (France)

Author keywords

3' RACE; Extremities; Paramyxovirus; Positive replication intermediate; Single stranded negative sense RNA

Indexed keywords

GENOMIC RNA; POLYNUCLEOTIDE;

ARTICLE; AVIAN PNEUMOVIRUS; GENE AMPLIFICATION; NEWCASTLE DISEASE PARAMYXOVIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PARAMYXOVIRUS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; REVERSE TRANSCRIPTION; SEQUENCE ANALYSIS; VIRUS GENOME;

3′ RACE; EXTREMITIES; PARAMYXOVIRUS; POSITIVE REPLICATION INTERMEDIATE; SINGLE STRANDED NEGATIVE SENSE RNA;

5' UNTRANSLATED REGIONS; METAPNEUMOVIRUS; NEWCASTLE DISEASE VIRUS; POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION; RNA, VIRAL; SEQUENCE ANALYSIS, DNA;

AVIAN METAPNEUMOVIRUS; NEWCASTLE DISEASE VIRUS; PARAMYXOVIRIDAE;

EID: 84879722722     PISSN: 01660934     EISSN: 18790984     Source Type: Journal    
DOI: 10.1016/j.jviromet.2013.05.007     Document Type: Article

References (20)

1. Briand F.-X., Henry A., Brown P., Massin P., Jestin V. Complete genome sequence of Newcastle disease virus strain belonging to a recently identified genotype. Genome Announcements 1 2013.
2. Brown P.A., Lupini C., Catelli E., Clubbe J., Ricchizzi E., Naylor C.J. A single polymerase (L) mutation in avian metapneumovirus increased virulence and partially maintained virus viability at an elevated temperature. J. Gen. Virol. 2011, 92:346-354.
3. Conzelmann K.K., Schnell M. Rescue of synthetic genomic RNA analogs of rabies virus by plasmid-encoded proteins. J. Virol. 1994, 68:713-719.
4. de Graaf M., Osterhaus A.D., Fouchier R.A., Holmes E.C. Evolutionary dynamics of human and avian metapneumoviruses. J. Gen. Virol. 2008, 89:2933-2942.
5. Herfst S., de Graaf M., Schickli J.H., Tang R.S., Kaur J., Yang C.F., Spaete R.R., Haller A.A., van den Hoogen B.G., Osterhaus A.D., Fouchier R.A. Recovery of human metapneumovirus genetic lineages A and B from cloned cDNA. J. Virol. 2004, 78:8264-8270.
6. Li Z., Yu M., Zhang H., Wang H.Y., Wang L.F. Improved rapid amplification of cDNA ends (RACE) for mapping both the 5' and 3' terminal sequences of paramyxovirus genomes. J. Virol. Methods 2005, 130:154-156.
7. Ling R., Sinkovic S., Toquin D., Guionie O., Eterradossi N., Easton A.J. Deletion of the SH gene from avian metapneumovirus has a greater impact on virus production and immunogenicity in turkeys than deletion of the G gene or M2-2 open reading frame. J. Gen. Virol. 2008, 89:525-533.
8. Lwamba H.C., Alvarez R., Wise M.G., Yu Q., Halvorson D., Njenga M.K., Seal B.S. Comparison of the full-length genome sequence of avian metapneumovirus subtype C with other paramyxoviruses. Virus Res. 2005, 107:83-92.
9. Marriott A.C., Smith J.M., Easton A.J. Fidelity of leader and trailer sequence usage by the respiratory syncytial virus and avian pneumovirus replication complexes. J. Virol. 2001, 75:6265-6272.
10. Miller P.J., Kim L.M., Ip H.S., Afonso C.L. Evolutionary dynamics of Newcastle disease virus. Virology 2009, 391:64-72.
11. Naylor C.J., Ling R., Edworthy N., Savage C.E., Easton A.J. Avian metapneumovirus SH gene end and G protein mutations influence the level of protection of live-vaccine candidates. J. Gen. Virol. 2007, 88:1767-1775.
12. OIE Newcastle disease. OIE Terrestrial Manual 2012: Manual of Diagnostic Tests and Vaccines for Terrestrial Animals 2012, World Organisation for animal Health, Paris, France, (Chapter 2.3.14).
13. Peeples M.E., Collins P.L. Mutations in the 5' trailer region of a respiratory syncytial virus minigenome which limit RNA replication to one step. J. Virol. 2000, 74:146-155.
14. Peeters B.P., de Leeuw O.S., Koch G., Gielkens A.L. Rescue of Newcastle disease virus from cloned cDNA: evidence that cleavability of the fusion protein is a major determinant for virulence. J. Virol. 1999, 73:5001-5009.
15. Randhawa J.S., Marriott A.C., Pringle C.R., Easton A.J. Rescue of synthetic minireplicons establishes the absence of the NS1 and NS2 genes from avian pneumovirus. J. Virol. 1997, 71:9849-9854.
16. Reed L.J., Muench H. A simple method of estimating fifty percent end points. Am. J. Hyg. 1938, 27:493-497.
17. Thomas M., Hesse S., McKie A., Farzaneh F. Sequencing of cDNA using anchored oligo dT primers. Nucleic Acids Res. 1993, 21:3915-3916.
18. Tirumurugaan K.G., Kapgate S., Vinupriya M.K., Vijayarani K., Kumanan K., Elankumaran S. Genotypic and pathotypic characterization of Newcastle disease viruses from India. PLoS ONE 2011, 6:e28414.
19. Toquin D., Bayon-Auboyer M.H., Eterradossi N., Jestin V. Isolation of a pneumovirus from a Muscovy duck. Vet. Rec. 1999, 145:680.
20. Xiao S., Paldurai A., Nayak B., Subbiah M., Collins P.L., Samal S.K. Complete genome sequence of avian paramyxovirus type 7 (strain Tennessee) and comparison with other paramyxoviruses. Virus Res. 2009, 145:80-91.