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Volumn 8, Issue 6, 2013, Pages

Synthetic RNA Silencing of Actinorhodin Biosynthesis in Streptomyces coelicolor A3(2)

Author keywords

[No Author keywords available]

Indexed keywords

ACTINORHODINE; COMPLEMENTARY RNA; PEPTIDE NUCLEIC ACID; RNA; SYNTHETIC RNA; UNCLASSIFIED DRUG; ANTHRAQUINONE DERIVATIVE; ANTIINFECTIVE AGENT;

EID: 84879547445     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0067509     Document Type: Article
Times cited : (17)

References (39)
  • 1
    • 60149089144 scopus 로고    scopus 로고
    • Regulatory RNAs in bacteria
    • Waters LS, Storz G, (2009) Regulatory RNAs in bacteria. Cell 136: 615-628.
    • (2009) Cell , vol.136 , pp. 615-628
    • Waters, L.S.1    Storz, G.2
  • 2
    • 52449093583 scopus 로고    scopus 로고
    • High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs
    • Livny J, Teonadi H, Livny M, Waldor MK, (2008) High-throughput, kingdom-wide prediction and annotation of bacterial non-coding RNAs. PLoS ONE 3: e3197.
    • (2008) PLoS ONE , vol.3
    • Livny, J.1    Teonadi, H.2    Livny, M.3    Waldor, M.K.4
  • 3
    • 34247173351 scopus 로고    scopus 로고
    • Identification of small RNAs in diverse bacterial species
    • Livny J, Waldor MK, (2007) Identification of small RNAs in diverse bacterial species. Curr Opin Microbiol 10: 96-101.
    • (2007) Curr Opin Microbiol , vol.10 , pp. 96-101
    • Livny, J.1    Waldor, M.K.2
  • 4
    • 77957345958 scopus 로고    scopus 로고
    • Regulation of a novel gene cluster involved in secondary metabolite production in Streptomyces coelicolor
    • Hindra P, Elliot M, (2010) Regulation of a novel gene cluster involved in secondary metabolite production in Streptomyces coelicolor. J Bacteriol 192: 4973.
    • (2010) J Bacteriol , vol.192 , pp. 4973
    • Hindra, P.1    Elliot, M.2
  • 7
    • 67749114255 scopus 로고    scopus 로고
    • Identification and gene disruption of small noncoding RNAs in Streptomyces griseus
    • Tezuka T, Hara H, Ohnishi Y, Horinouchi S, (2009) Identification and gene disruption of small noncoding RNAs in Streptomyces griseus. J Bacteriol 191: 4896-4904.
    • (2009) J Bacteriol , vol.191 , pp. 4896-4904
    • Tezuka, T.1    Hara, H.2    Ohnishi, Y.3    Horinouchi, S.4
  • 8
    • 79956086810 scopus 로고    scopus 로고
    • Deep sequencing-based identification of small non-coding RNAs in Streptomyces coelicolor
    • Vockenhuber MP, Sharma CM, Statt MG, Schmidt D, Xu Z, et al. (2011) Deep sequencing-based identification of small non-coding RNAs in Streptomyces coelicolor. RNA biology 8: 468-477.
    • (2011) RNA Biology , vol.8 , pp. 468-477
    • Vockenhuber, M.P.1    Sharma, C.M.2    Statt, M.G.3    Schmidt, D.4    Xu, Z.5
  • 9
    • 75749085389 scopus 로고    scopus 로고
    • Noncoding RNA of glutamine synthetase I modulates antibiotic production in Streptomyces coelicolor A3(2)
    • D'alia D, Nieselt K, Steigele S, Müller J, Verburg I, et al. (2010) Noncoding RNA of glutamine synthetase I modulates antibiotic production in Streptomyces coelicolor A3(2). J Bacteriol 192: 1160-1164.
    • (2010) J Bacteriol , vol.192 , pp. 1160-1164
    • D'alia, D.1    Nieselt, K.2    Steigele, S.3    Müller, J.4    Verburg, I.5
  • 10
    • 0028963607 scopus 로고
    • Activation of the actinorhodin biosynthetic pathway in Streptomyces lividans
    • Romero NM, Mellado RP, (1995) Activation of the actinorhodin biosynthetic pathway in Streptomyces lividans. FEMS Microbiol Lett 127: 79-84.
    • (1995) FEMS Microbiol Lett , vol.127 , pp. 79-84
    • Romero, N.M.1    Mellado, R.P.2
  • 11
    • 0026685073 scopus 로고
    • Heterologous activation of the actinorhodin biosynthetic pathway in Streptomyces lividans
    • Romero NM, Parro V, Malpartida F, Mellado RP, (1992) Heterologous activation of the actinorhodin biosynthetic pathway in Streptomyces lividans. Nucleic Acids Res 20: 2767-2772.
    • (1992) Nucleic Acids Res , vol.20 , pp. 2767-2772
    • Romero, N.M.1    Parro, V.2    Malpartida, F.3    Mellado, R.P.4
  • 12
    • 84856763659 scopus 로고    scopus 로고
    • Streptomyces coelicolor sRNA scr5239 inhibits agarase expression by direct base pairing to the dagA coding region
    • Vockenhuber MP, Suess B, (2012) Streptomyces coelicolor sRNA scr5239 inhibits agarase expression by direct base pairing to the dagA coding region. Microbiology 158: 424-435.
    • (2012) Microbiology , vol.158 , pp. 424-435
    • Vockenhuber, M.P.1    Suess, B.2
  • 13
    • 33645508496 scopus 로고    scopus 로고
    • Translational repression is sufficient for gene silencing by bacterial small noncoding RNAs in the absence of mRNA destruction
    • Morita T, Mochizuki Y, Aiba H, (2006) Translational repression is sufficient for gene silencing by bacterial small noncoding RNAs in the absence of mRNA destruction. Proc Natl Acad Sci USA 103: 4858-4863.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 4858-4863
    • Morita, T.1    Mochizuki, Y.2    Aiba, H.3
  • 14
    • 67649479403 scopus 로고    scopus 로고
    • Concurrent growth rate and transcript analyses reveal essential gene stringency in Escherichia coli
    • Goh S, Boberek JM, Nakashima N, Stach J, Good L, (2009) Concurrent growth rate and transcript analyses reveal essential gene stringency in Escherichia coli. PLoS ONE 4: e6061.
    • (2009) PLoS ONE , vol.4
    • Goh, S.1    Boberek, J.M.2    Nakashima, N.3    Stach, J.4    Good, L.5
  • 15
    • 33751011629 scopus 로고    scopus 로고
    • In vivo DNase I sensitivity of the Streptomyces coelicolor chromosome correlates with gene expression: implications for bacterial chromosome structure
    • McArthur M, Bibb M, (2006) In vivo DNase I sensitivity of the Streptomyces coelicolor chromosome correlates with gene expression: implications for bacterial chromosome structure. Nucleic Acids Res 34: 5395-5401.
    • (2006) Nucleic Acids Res , vol.34 , pp. 5395-5401
    • McArthur, M.1    Bibb, M.2
  • 17
    • 4644226298 scopus 로고    scopus 로고
    • Inhibition of Staphylococcus aureus gene expression and growth using antisense peptide nucleic acids
    • Nekhotiaeva N, Awasthi SK, Nielsen PE, Good L, (2004) Inhibition of Staphylococcus aureus gene expression and growth using antisense peptide nucleic acids. Mol Ther 10: 652-659.
    • (2004) Mol Ther , vol.10 , pp. 652-659
    • Nekhotiaeva, N.1    Awasthi, S.K.2    Nielsen, P.E.3    Good, L.4
  • 18
    • 66249131670 scopus 로고    scopus 로고
    • Inactivation of expression of several genes in a variety of bacterial species by EGS technology
    • Shen N, Ko JH, Xiao G, Wesolowski D, Shan G, et al. (2009) Inactivation of expression of several genes in a variety of bacterial species by EGS technology. Proc Natl Acad Sci USA 106: 8163-8168.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 8163-8168
    • Shen, N.1    Ko, J.H.2    Xiao, G.3    Wesolowski, D.4    Shan, G.5
  • 19
    • 0036575444 scopus 로고    scopus 로고
    • Antisense RNAs everywhere?
    • Wagner E, Flardh K, (2002) Antisense RNAs everywhere? Trends Genet 18: 223-226.
    • (2002) Trends Genet , vol.18 , pp. 223-226
    • Wagner, E.1    Flardh, K.2
  • 20
    • 33845667323 scopus 로고    scopus 로고
    • Paired termini stabilize antisense RNAs and enhance conditional gene silencing in Escherichia coli
    • Nakashima N, Tamura T, Good L, (2006) Paired termini stabilize antisense RNAs and enhance conditional gene silencing in Escherichia coli. Nucleic Acids Res 34: e138.
    • (2006) Nucleic Acids Res , vol.34
    • Nakashima, N.1    Tamura, T.2    Good, L.3
  • 21
  • 23
    • 0043123153 scopus 로고    scopus 로고
    • Vienna RNA secondary structure server
    • Hofacker IL, (2003) Vienna RNA secondary structure server. Nucleic Acids Res 31: 3429-3431.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3429-3431
    • Hofacker, I.L.1
  • 26
    • 77149133405 scopus 로고    scopus 로고
    • Improvement of secondary metabolite production in Streptomyces by manipulating pathway regulation
    • Chen Y, Smanski MJ, Shen B, (2010) Improvement of secondary metabolite production in Streptomyces by manipulating pathway regulation. Appl Microbiol Biotechnol 86: 19-25.
    • (2010) Appl Microbiol Biotechnol , vol.86 , pp. 19-25
    • Chen, Y.1    Smanski, M.J.2    Shen, B.3
  • 27
    • 0032986060 scopus 로고    scopus 로고
    • Antisense RNA strategies for metabolic engineering of Clostridium acetobutylicum
    • Desai RP, Papoutsakis ET, (1999) Antisense RNA strategies for metabolic engineering of Clostridium acetobutylicum. Appl Environ Microbiol 65: 936-945.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 936-945
    • Desai, R.P.1    Papoutsakis, E.T.2
  • 28
    • 53249134368 scopus 로고    scopus 로고
    • Beyond silencing - engineering applications of RNA interference and antisense technology for altering cellular phenotype
    • Hebert CG, Valdes JJ, Bentley WE, (2008) Beyond silencing- engineering applications of RNA interference and antisense technology for altering cellular phenotype. Curr Opin Biotechnol 19: 500-505.
    • (2008) Curr Opin Biotechnol , vol.19 , pp. 500-505
    • Hebert, C.G.1    Valdes, J.J.2    Bentley, W.E.3
  • 29
    • 0028919939 scopus 로고
    • Bulged-out nucleotides protect an antisense RNA from RNase III cleavage
    • Hjalt TA, Wagner EG, (1995) Bulged-out nucleotides protect an antisense RNA from RNase III cleavage. Nucleic Acids Res 23: 571-579.
    • (1995) Nucleic Acids Res , vol.23 , pp. 571-579
    • Hjalt, T.A.1    Wagner, E.G.2
  • 30
    • 34247158257 scopus 로고    scopus 로고
    • Mechanism of RNA silencing by Hfq-binding small RNAs
    • Aiba H, (2007) Mechanism of RNA silencing by Hfq-binding small RNAs. Curr Opin Microbiol 10: 134-139.
    • (2007) Curr Opin Microbiol , vol.10 , pp. 134-139
    • Aiba, H.1
  • 31
    • 0034450181 scopus 로고    scopus 로고
    • Streptomycetes in micro-cultures: growth, production of secondary metabolites, and storage and retrieval in the 96-well format
    • Minas W, Bailey JE, Duetz W, (2000) Streptomycetes in micro-cultures: growth, production of secondary metabolites, and storage and retrieval in the 96-well format. Antonie Van Leeuwenhoek 78: 297-305.
    • (2000) Antonie Van Leeuwenhoek , vol.78 , pp. 297-305
    • Minas, W.1    Bailey, J.E.2    Duetz, W.3
  • 33
    • 0031791740 scopus 로고    scopus 로고
    • Actinorhodin and undecylprodigiosin production in wild-type and relA mutant strains of Streptomyces coelicolor A3(2) grown in continuous culture
    • Kang SG, Jin W, Bibb MJ, Lee KJ, (1998) Actinorhodin and undecylprodigiosin production in wild-type and relA mutant strains of Streptomyces coelicolor A3(2) grown in continuous culture. FEMS Microbiol Lett 168: 221-226.
    • (1998) FEMS Microbiol Lett , vol.168 , pp. 221-226
    • Kang, S.G.1    Jin, W.2    Bibb, M.J.3    Lee, K.J.4
  • 34
    • 26244432061 scopus 로고    scopus 로고
    • Transcriptional activation of the pathway-specific regulator of the actinorhodin biosynthetic genes in Streptomyces coelicolor
    • Uguru GC, Stephens KE, Stead JA, Towle JE, Baumberg S, et al. (2005) Transcriptional activation of the pathway-specific regulator of the actinorhodin biosynthetic genes in Streptomyces coelicolor. MolMicrobiol 58: 131-150.
    • (2005) MolMicrobiol , vol.58 , pp. 131-150
    • Uguru, G.C.1    Stephens, K.E.2    Stead, J.A.3    Towle, J.E.4    Baumberg, S.5
  • 35
    • 1542333740 scopus 로고    scopus 로고
    • The translation start codon region is sensitive to antisense PNA inhibition in Escherichia coli
    • Dryselius R, Aswasti SK, Rajarao GK, Nielsen PE, Good L, (2003) The translation start codon region is sensitive to antisense PNA inhibition in Escherichia coli. Oligonucleotides 13: 427-433.
    • (2003) Oligonucleotides , vol.13 , pp. 427-433
    • Dryselius, R.1    Aswasti, S.K.2    Rajarao, G.K.3    Nielsen, P.E.4    Good, L.5
  • 36
    • 38349086492 scopus 로고    scopus 로고
    • The global role of ppGpp synthesis in morphological differentiation and antibiotic production in Streptomyces coelicolor A3(2)
    • Hesketh A, Chen WJ, Ryding J, Chang S, Bibb M, (2007) The global role of ppGpp synthesis in morphological differentiation and antibiotic production in Streptomyces coelicolor A3(2). Genome biology 8: R161.
    • (2007) Genome Biology , vol.8
    • Hesketh, A.1    Chen, W.J.2    Ryding, J.3    Chang, S.4    Bibb, M.5
  • 37
    • 38949102057 scopus 로고    scopus 로고
    • Manipulating and understanding antibiotic production in Streptomyces coelicolor A3(2) with decoy oligonucleotides
    • McArthur M, Bibb MJ, (2008) Manipulating and understanding antibiotic production in Streptomyces coelicolor A3(2) with decoy oligonucleotides. Proc Natl Acad Sci USA 105: 1020-1025.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 1020-1025
    • McArthur, M.1    Bibb, M.J.2
  • 38
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl MW, (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Research 29: e45.
    • (2001) Nucleic Acids Research , vol.29
    • Pfaffl, M.W.1
  • 39
    • 0031572413 scopus 로고    scopus 로고
    • High efficiency intergeneric conjugal transfer of plasmid DNA from Escherichia coli to methyl DNA-restricting streptomycetes
    • Flett F, Mersinias V, Smith CP, (1997) High efficiency intergeneric conjugal transfer of plasmid DNA from Escherichia coli to methyl DNA-restricting streptomycetes. FEMS Microbiol Lett 48: 223-229.
    • (1997) FEMS Microbiol Lett , vol.48 , pp. 223-229
    • Flett, F.1    Mersinias, V.2    Smith, C.P.3


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