메뉴 건너뛰기




Volumn , Issue , 2005, Pages 386-393

PhyNav: A novel approach to reconstruct large phylogenies

Author keywords

[No Author keywords available]

Indexed keywords

EVOLUTIONARY RELATIONSHIPS; GENETIC DATA; MINIMAL SUBSET; OPTIMALITY CRITERIA; PHYLOGENETIC INFORMATION; PHYLOGENETIC TREES; REAL DATA SETS; SUB TREES;

EID: 84879540883     PISSN: 14318814     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1007/3-540-28084-7-44     Document Type: Conference Paper
Times cited : (4)

References (20)
  • 1
    • 0033984609 scopus 로고    scopus 로고
    • Weighted neighbor joining: A likelihood based-approach to distance-based phylogeny reconstruction
    • BRUNO, W.J., SOCCI., N.D. and HALPERN, A.L. (2000): Weighted Neighbor Joining: A Likelihood Based-Approach to Distance-Based Phylogeny Reconstruction. J. Mol. Evol., 17, 189-197.
    • (2000) J. Mol. Evol. , vol.17 , pp. 189-197
    • Bruno, W.J.1    Socci, N.D.2    Halpern, A.L.3
  • 2
    • 84959792503 scopus 로고
    • The number of evolutionary trees
    • FELSENSTEIN, J. (1978): The number of evolutionary trees. Syst. Zool., 27, 27-33.
    • (1978) Syst. Zool. , vol.27 , pp. 27-33
    • Felsenstein, J.1
  • 3
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • FELSENSTEIN, J. (1981): Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol., 17, 368-376.
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 4
    • 0003437299 scopus 로고
    • Department of Genetics, University of Washington, Seattle, distributed by the author
    • FELSENSTEIN, J. (1993): PHYLIP (Phylogeny Inference Package) version 3.5c. Department of Genetics, University of Washington, Seattle, distributed by the author.
    • (1993) PHYLIP (Phylogeny Inference Package) Version 3.5c
    • Felsenstein, J.1
  • 5
    • 0003991673 scopus 로고    scopus 로고
    • Sinauer Associates, Sunderland, Massachusetts
    • FELSENSTEIN, J. (2004): Inferring Phylogenies. Sinauer Associates, Sunderland, Massachusetts.
    • (2004) Inferring Phylogenies
    • Felsenstein, J.1
  • 6
    • 84959747425 scopus 로고
    • Toward defining the course of evolution: Minimum change for a specific tree topology
    • FITCH, W.M. (1971): Toward defining the course of evolution: Minimum change for a specific tree topology. Syst. Zool., 20, 406-416.
    • (1971) Syst. Zool. , vol.20 , pp. 406-416
    • Fitch, W.M.1
  • 7
    • 0030807655 scopus 로고    scopus 로고
    • BIONJ: An improved version of the NJ algorithm based on a simple model of sequence data
    • GASCUEL, O. (1997): BIONJ: An Improved Version of the NJ Algorithm Based on a Simple Model of Sequence Data. Mol. Biol. Evol., 14, 685-695.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 685-695
    • Gascuel, O.1
  • 8
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast and accurate algorithm to estimate large phylogenies by maximum likelihood
    • GUINDON, S. and GASCUEL, O. (2003): A Simple, Fast and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood. Sys. Biol., 52, 696-704.
    • (2003) Sys. Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 9
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • KIMURA, M. (1980): A Simple Method for Estimating Evolutionary Rates of Base Substitutions through Comparative Studies of Nucleotide Sequences. J. Mol. Evol., 16, 111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 10
    • 0036679128 scopus 로고    scopus 로고
    • The metapopulation genetic algorithm: An efficient solution for the problem of large phylogeny estimation
    • LEMMON, A.R. and MILINKOVITCH, M.C. (2002): The metapopulation genetic algorithm: An efficient solution for the problem of large phylogeny estimation. Proc. Natl. Acad. Sci. USA, 99, 10516-10521.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 10516-10521
    • Lemmon, A.R.1    Milinkovitch, M.C.2
  • 11
    • 0030928378 scopus 로고    scopus 로고
    • Seq-Gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
    • RAMBAUT, A. and GRASSLY, N.C. (1997): Seq-Gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees. Comput. Appl. Biosci., 13, 235-238.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 235-238
    • Rambaut, A.1    Grassly, N.C.2
  • 13
    • 0027185401 scopus 로고
    • Theoretical foundation of the minimum-evolution method of phylogenetic inference
    • RZHETSKY, A. and NEI, M. (1993): Theoretical Foundation of the Minimum-Evolution Method of Phylogenetic Inference. Mol. Biol. Evol., 10, 1073-1095.
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 1073-1095
    • Rzhetsky, A.1    Nei, M.2
  • 14
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • SAITOU, N. and NEI, M. (1987): The Neighbor-joining Method: A New Method for Reconstructing Phylogenetic Trees. Mol. Biol. Evol., 4, 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 15
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
    • SCHMIDT, H.A., STRIMMER, K., VINGRON, M. and VON HAESELER, A. (2002): TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics, 18, 502-504.
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    Von Haeseler, A.4
  • 16
    • 0029836454 scopus 로고    scopus 로고
    • Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree topologies
    • STRIMMER, K. and VON HAESELER, A. (1996): Quartet Puzzling: A Quartet Maximum-Likelihood Method for Reconstructing Tree Topologies. Mol. Biol. Evol., 13, 964-969.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 964-969
    • Strimmer, K.1    Von Haeseler, A.2
  • 17
    • 0001336205 scopus 로고    scopus 로고
    • Phylogeny reconstruction
    • D.M. Hillis, C. Moritz, and B.K. Mable (Eds.), 2nd ed. Sinauer Associates, Sunderland,Massachusetts
    • SWOFFORD, D.L., OLSEN, G.J., WADDELL, P.J. and HILLIS, D.M. (1996): Phylogeny Reconstruction. In: D.M. Hillis, C. Moritz, and B.K. Mable (Eds.): Molecular Systematics, 2nd ed. Sinauer Associates, Sunderland,Massachusetts, 407-514.
    • (1996) Molecular Systematics , pp. 407-514
    • Swofford, D.L.1    Olsen, G.J.2    Waddell, P.J.3    Hillis, D.M.4
  • 18
    • 3242801484 scopus 로고    scopus 로고
    • IQPNNI: Moving fast through tree space and stopping in time
    • VINH, L.S., and VON HAESELER, A.: IQPNNI: Moving fast through tree space and stopping in time. Mol. Evol. Biol., 21, 1565-1571.
    • Mol. Evol. Biol. , vol.21 , pp. 1565-1571
    • Vinh, L.S.1    Von Haeseler, A.2
  • 19
    • 0041385962 scopus 로고    scopus 로고
    • Pandit: A database of protein and associated nucleotide domains with inferred trees
    • WHELAN, S., DE BAKKER, P.I.W. and GOLDMAN, N. (2003): Pandit: a database of protein and associated nucleotide domains with inferred trees. Bioinformatics, 19, 1556-1563.
    • (2003) Bioinformatics , vol.19 , pp. 1556-1563
    • Whelan, S.1    De Bakker, P.I.W.2    Goldman, N.3
  • 20
    • 0035031966 scopus 로고    scopus 로고
    • A general empirical model of protein evolution derived from multiple protein families using a maximum likelihood approach
    • WHELAN, S. and GOLDMAN, N. (2001): A General Empirical Model of Protein Evolution Derived from Multiple Protein Families Using a Maximum Likelihood Approach. Mol. Biol. Evol., 18, 691-699.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 691-699
    • Whelan, S.1    Goldman, N.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.