-
1
-
-
0032987478
-
Membrane protein folding and stability: Physical principles
-
White, S. H. and Wimley, W. C. (1999) Membrane protein folding and stability: Physical principles Annu. Rev. Biophys. Biomol. Struct. 28, 319-365
-
(1999)
Annu. Rev. Biophys. Biomol. Struct.
, vol.28
, pp. 319-365
-
-
White, S.H.1
Wimley, W.C.2
-
2
-
-
28444488355
-
Solving the membrane protein folding problem
-
Bowie, J. U. (2005) Solving the membrane protein folding problem Nature 438, 581-589
-
(2005)
Nature
, vol.438
, pp. 581-589
-
-
Bowie, J.U.1
-
3
-
-
0035812599
-
Energetics, stability, and prediction of transmembrane helices
-
Jayasinghe, S., Hristova, K., and White, S. H. (2001) Energetics, stability, and prediction of transmembrane helices J. Mol. Biol. 312, 927-934
-
(2001)
J. Mol. Biol.
, vol.312
, pp. 927-934
-
-
Jayasinghe, S.1
Hristova, K.2
White, S.H.3
-
4
-
-
0030005250
-
Solvation energies of amino acid side chains and backbone in a family of host-guest pentapeptides
-
Wimley, W. C., Creamer, T. P., and White, S. H. (1996) Solvation energies of amino acid side chains and backbone in a family of host-guest pentapeptides Biochemistry 35, 5109-5124
-
(1996)
Biochemistry
, vol.35
, pp. 5109-5124
-
-
Wimley, W.C.1
Creamer, T.P.2
White, S.H.3
-
5
-
-
0029738872
-
Experimentally determined hydrophobicity scale for proteins at membrane interfaces
-
Wimley, W. C. and White, S. H. (1996) Experimentally determined hydrophobicity scale for proteins at membrane interfaces Nat. Struct. Biol. 3, 842-848
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 842-848
-
-
Wimley, W.C.1
White, S.H.2
-
6
-
-
13444262028
-
Recognition of transmembrane helices by the endoplasmic reticulum translocon
-
Hessa, T., Kim, H., Bihlmaier, K., Lundin, C., Boekel, J., Andersson, H., Nilsson, I., White, S. H., and von Heijne, G. (2005) Recognition of transmembrane helices by the endoplasmic reticulum translocon Nature 433, 377-381
-
(2005)
Nature
, vol.433
, pp. 377-381
-
-
Hessa, T.1
Kim, H.2
Bihlmaier, K.3
Lundin, C.4
Boekel, J.5
Andersson, H.6
Nilsson, I.7
White, S.H.8
Von Heijne, G.9
-
7
-
-
37249037182
-
Molecular code for transmembrane-helix recognition by the Sec61 translocon
-
Hessa, T., Meindl-Beinker, N. M., Bernsel, A., Kim, H., Sato, Y., Lerch-Bader, M., Nilsson, I., White, S. H., and von Heijne, G. (2007) Molecular code for transmembrane-helix recognition by the Sec61 translocon Nature 450, 1026-1030
-
(2007)
Nature
, vol.450
, pp. 1026-1030
-
-
Hessa, T.1
Meindl-Beinker, N.M.2
Bernsel, A.3
Kim, H.4
Sato, Y.5
Lerch-Bader, M.6
Nilsson, I.7
White, S.H.8
Von Heijne, G.9
-
8
-
-
79959928058
-
Side-chain hydrophobicity scale derived from transmembrane protein folding into lipid bilayers
-
Moon, C. P. and Fleming, K. G. (2011) Side-chain hydrophobicity scale derived from transmembrane protein folding into lipid bilayers Proc. Natl. Acad. Sci. U.S.A. 108, 10174-10177
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 10174-10177
-
-
Moon, C.P.1
Fleming, K.G.2
-
9
-
-
33846399142
-
E(z), a depth-dependent potential for assessing the energies of insertion of amino acid side-chains into membranes: Derivation and applications to determining the orientation of transmembrane and interfacial helices
-
Senes, A., Chadi, D. C., Law, P. B., Walters, R. F., Nanda, V., and Degrado, W. F. (2007) E(z), a depth-dependent potential for assessing the energies of insertion of amino acid side-chains into membranes: Derivation and applications to determining the orientation of transmembrane and interfacial helices J. Mol. Biol. 366, 436-448
-
(2007)
J. Mol. Biol.
, vol.366
, pp. 436-448
-
-
Senes, A.1
Chadi, D.C.2
Law, P.B.3
Walters, R.F.4
Nanda, V.5
Degrado, W.F.6
-
10
-
-
84861038844
-
Knowledge-based potential for positioning membrane-associated structures and assessing residue-specific energetic contributions
-
Schramm, C. A., Hannigan, B. T., Donald, J. E., Keasar, C., Saven, J. G., Degrado, W. F., and Samish, I. (2012) Knowledge-based potential for positioning membrane-associated structures and assessing residue-specific energetic contributions Structure 20, 924-935
-
(2012)
Structure
, vol.20
, pp. 924-935
-
-
Schramm, C.A.1
Hannigan, B.T.2
Donald, J.E.3
Keasar, C.4
Saven, J.G.5
Degrado, W.F.6
Samish, I.7
-
11
-
-
0035795721
-
Amino acid distributions in integral membrane protein structures
-
Ulmschneider, M. B. and Sansom, M. S. (2001) Amino acid distributions in integral membrane protein structures Biochim. Biophys. Acta 1512, 1-14
-
(2001)
Biochim. Biophys. Acta
, vol.1512
, pp. 1-14
-
-
Ulmschneider, M.B.1
Sansom, M.S.2
-
12
-
-
0242659352
-
Protein-lipid interactions studied with designed transmembrane peptides: Role of hydrophobic matching and interfacial anchoring
-
de Planque, M. R. and Killian, J. A. (2003) Protein-lipid interactions studied with designed transmembrane peptides: Role of hydrophobic matching and interfacial anchoring Mol. Membr. Biol. 20, 271-284
-
(2003)
Mol. Membr. Biol.
, vol.20
, pp. 271-284
-
-
De Planque, M.R.1
Killian, J.A.2
-
13
-
-
0034284386
-
How proteins adapt to a membrane-water interface
-
Killian, J. A. and von Heijne, G. (2000) How proteins adapt to a membrane-water interface Trends Biochem. Sci. 25, 429-434
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 429-434
-
-
Killian, J.A.1
Von Heijne, G.2
-
14
-
-
0027499143
-
Non-random distribution of amino acids in the transmembrane segments of human type i single span membrane proteins
-
Landolt-Marticorena, C., Williams, K. A., Deber, C. M., and Reithmeier, R. A. (1993) Non-random distribution of amino acids in the transmembrane segments of human type I single span membrane proteins J. Mol. Biol. 229, 602-608
-
(1993)
J. Mol. Biol.
, vol.229
, pp. 602-608
-
-
Landolt-Marticorena, C.1
Williams, K.A.2
Deber, C.M.3
Reithmeier, R.A.4
-
15
-
-
84858189018
-
Tyrosine replacing tryptophan as an anchor in GWALP peptides
-
Gleason, N. J., Vostrikov, V. V., Greathouse, D. V., Grant, C. V., Opella, S. J., and Koeppe, R. E., II (2012) Tyrosine replacing tryptophan as an anchor in GWALP peptides Biochemistry 51, 2044-2053
-
(2012)
Biochemistry
, vol.51
, pp. 2044-2053
-
-
Gleason, N.J.1
Vostrikov, V.V.2
Greathouse, D.V.3
Grant, C.V.4
Opella, S.J.5
Koeppe, R.E.I.I.6
-
16
-
-
0015217634
-
The solubility of amino acids and two glycine peptides in aqueous ethanol and dioxane solutions. Establishment of a hydrophobicity scale
-
Nozaki, Y. and Tanford, C. (1971) The solubility of amino acids and two glycine peptides in aqueous ethanol and dioxane solutions. Establishment of a hydrophobicity scale J. Biol. Chem. 246, 2211-2217
-
(1971)
J. Biol. Chem.
, vol.246
, pp. 2211-2217
-
-
Nozaki, Y.1
Tanford, C.2
-
17
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte, J. and Doolittle, R. F. (1982) A simple method for displaying the hydropathic character of a protein J. Mol. Biol. 157, 105-132
-
(1982)
J. Mol. Biol.
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
18
-
-
0019934717
-
The helical hydrophobic moment: A measure of the amphiphilicity of a helix
-
Eisenberg, D., Weiss, R. M., and Terwilliger, T. C. (1982) The helical hydrophobic moment: A measure of the amphiphilicity of a helix Nature 299, 371-374
-
(1982)
Nature
, vol.299
, pp. 371-374
-
-
Eisenberg, D.1
Weiss, R.M.2
Terwilliger, T.C.3
-
19
-
-
0022510143
-
Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins
-
Engelman, D. M., Steitz, T. A., and Goldman, A. (1986) Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins Annu. Rev. Biophys. Biophys. Chem. 15, 321-353
-
(1986)
Annu. Rev. Biophys. Biophys. Chem.
, vol.15
, pp. 321-353
-
-
Engelman, D.M.1
Steitz, T.A.2
Goldman, A.3
-
20
-
-
1642447757
-
Elastic coupling of integral membrane protein stability to lipid bilayer forces
-
Hong, H. and Tamm, L. K. (2004) Elastic coupling of integral membrane protein stability to lipid bilayer forces Proc. Natl. Acad. Sci. U.S.A. 101, 4065-4070
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 4065-4070
-
-
Hong, H.1
Tamm, L.K.2
-
21
-
-
77749246164
-
The transition state for folding of an outer membrane protein
-
Huysmans, G. H., Baldwin, S. A., Brockwell, D. J., and Radford, S. E. (2010) The transition state for folding of an outer membrane protein Proc. Natl. Acad. Sci. U.S.A. 107, 4099-4104
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 4099-4104
-
-
Huysmans, G.H.1
Baldwin, S.A.2
Brockwell, D.J.3
Radford, S.E.4
-
22
-
-
34447135007
-
Role of aromatic side chains in the folding and thermodynamic stability of integral membrane proteins
-
Hong, H., Park, S., Jimenez, R. H., Rinehart, D., and Tamm, L. K. (2007) Role of aromatic side chains in the folding and thermodynamic stability of integral membrane proteins J. Am. Chem. Soc. 129, 8320-8327
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 8320-8327
-
-
Hong, H.1
Park, S.2
Jimenez, R.H.3
Rinehart, D.4
Tamm, L.K.5
-
23
-
-
0033586795
-
Outer membrane protein A of Escherichia coli inserts and folds into lipid bilayers by a concerted mechanism
-
Kleinschmidt, J. H., den Blaauwen, T., Driessen, A. J., and Tamm, L. K. (1999) Outer membrane protein A of Escherichia coli inserts and folds into lipid bilayers by a concerted mechanism Biochemistry 38, 5006-5016
-
(1999)
Biochemistry
, vol.38
, pp. 5006-5016
-
-
Kleinschmidt, J.H.1
Den Blaauwen, T.2
Driessen, A.J.3
Tamm, L.K.4
-
24
-
-
0032102987
-
Coupling site-directed mutagenesis with high-level expression: Large scale production of mutant porins from E. coli
-
Prilipov, A., Phale, P. S., Van Gelder, P., Rosenbusch, J. P., and Koebnik, R. (1998) Coupling site-directed mutagenesis with high-level expression: Large scale production of mutant porins from E. coli FEMS Microbiol. Lett. 163, 65-72
-
(1998)
FEMS Microbiol. Lett.
, vol.163
, pp. 65-72
-
-
Prilipov, A.1
Phale, P.S.2
Van Gelder, P.3
Rosenbusch, J.P.4
Koebnik, R.5
-
25
-
-
0026511656
-
The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein folding
-
Fersht, A. R., Matouschek, A., and Serrano, L. (1992) The folding of an enzyme. I. Theory of protein engineering analysis of stability and pathway of protein folding J. Mol. Biol. 224, 771-782
-
(1992)
J. Mol. Biol.
, vol.224
, pp. 771-782
-
-
Fersht, A.R.1
Matouschek, A.2
Serrano, L.3
-
26
-
-
84879549047
-
-
Statistics to use. (accessed March 5, 2013)
-
Kirkman, T. W. (1996) Statistics to use. http://www.physics.csbsju.edu/ stats/ (accessed March 5, 2013).
-
(1996)
-
-
Kirkman, T.W.1
-
27
-
-
0034724567
-
High-resolution structure of the OmpA membrane domain
-
Pautsch, A. and Schulz, G. E. (2000) High-resolution structure of the OmpA membrane domain J. Mol. Biol. 298, 273-282
-
(2000)
J. Mol. Biol.
, vol.298
, pp. 273-282
-
-
Pautsch, A.1
Schulz, G.E.2
-
28
-
-
13444280419
-
PDB-TM: Selection and membrane localization of transmembrane proteins in the Protein Data Bank
-
Tusnady, G. E., Dosztanyi, Z., and Simon, I. (2005) PDB-TM: Selection and membrane localization of transmembrane proteins in the Protein Data Bank Nucleic Acids Res. 33, D275-D278
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Tusnady, G.E.1
Dosztanyi, Z.2
Simon, I.3
-
29
-
-
0028986697
-
Characterization of two membrane-bound forms of OmpA
-
Rodionova, N. A., Tatulian, S. A., Surrey, T., Jahnig, F., and Tamm, L. K. (1995) Characterization of two membrane-bound forms of OmpA Biochemistry 34, 1921-1929
-
(1995)
Biochemistry
, vol.34
, pp. 1921-1929
-
-
Rodionova, N.A.1
Tatulian, S.A.2
Surrey, T.3
Jahnig, F.4
Tamm, L.K.5
-
30
-
-
0029822373
-
Folding intermediates of a β-barrel membrane protein. Kinetic evidence for a multi-step membrane insertion mechanism
-
Kleinschmidt, J. H. and Tamm, L. K. (1996) Folding intermediates of a β-barrel membrane protein. Kinetic evidence for a multi-step membrane insertion mechanism Biochemistry 35, 12993-13000
-
(1996)
Biochemistry
, vol.35
, pp. 12993-13000
-
-
Kleinschmidt, J.H.1
Tamm, L.K.2
-
31
-
-
74249102461
-
Fast-time scale dynamics of outer membrane protein A by extended model-free analysis of NMR relaxation data
-
Liang, B., Arora, A., and Tamm, L. K. (2010) Fast-time scale dynamics of outer membrane protein A by extended model-free analysis of NMR relaxation data Biochim. Biophys. Acta 1798, 68-76
-
(2010)
Biochim. Biophys. Acta
, vol.1798
, pp. 68-76
-
-
Liang, B.1
Arora, A.2
Tamm, L.K.3
-
32
-
-
17844379225
-
Empirical lipid propensities of amino acid residues in multispan α helical membrane proteins
-
Adamian, L., Nanda, V., DeGrado, W. F., and Liang, J. (2005) Empirical lipid propensities of amino acid residues in multispan α helical membrane proteins Proteins 59, 496-509
-
(2005)
Proteins
, vol.59
, pp. 496-509
-
-
Adamian, L.1
Nanda, V.2
Degrado, W.F.3
Liang, J.4
-
33
-
-
33646831343
-
Fusion peptide of influenza hemagglutinin requires a fixed angle boomerang structure for activity
-
Lai, A. L., Park, H., White, J. M., and Tamm, L. K. (2006) Fusion peptide of influenza hemagglutinin requires a fixed angle boomerang structure for activity J. Biol. Chem. 281, 5760-5770
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 5760-5770
-
-
Lai, A.L.1
Park, H.2
White, J.M.3
Tamm, L.K.4
-
34
-
-
73949139901
-
Dynamic structure of lipid-bound synaptobrevin suggests a nucleation-propagation mechanism for trans-SNARE complex formation
-
Ellena, J. F., Liang, B. Y., Wiktor, M., Stein, A., Cafiso, D. S., Jahn, R., and Tamm, L. K. (2009) Dynamic structure of lipid-bound synaptobrevin suggests a nucleation-propagation mechanism for trans-SNARE complex formation Proc. Natl. Acad. Sci. U.S.A. 106, 20306-20311
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 20306-20311
-
-
Ellena, J.F.1
Liang, B.Y.2
Wiktor, M.3
Stein, A.4
Cafiso, D.S.5
Jahn, R.6
Tamm, L.K.7
-
35
-
-
79851490465
-
C-Terminal Tyrosine Residues Modulate the Fusion Activity of the Hendra Virus Fusion Protein
-
Popa, A., Pager, C. T., and Dutch, R. E. (2011) C-Terminal Tyrosine Residues Modulate the Fusion Activity of the Hendra Virus Fusion Protein Biochemistry 50, 945-952
-
(2011)
Biochemistry
, vol.50
, pp. 945-952
-
-
Popa, A.1
Pager, C.T.2
Dutch, R.E.3
-
36
-
-
20544475665
-
Membrane-protein interactions in cell signaling and membrane trafficking
-
Cho, W. H. and Stahelin, R. V. (2005) Membrane-protein interactions in cell signaling and membrane trafficking Annu. Rev. Biophys. Biomol. Struct. 34, 119-151
-
(2005)
Annu. Rev. Biophys. Biomol. Struct.
, vol.34
, pp. 119-151
-
-
Cho, W.H.1
Stahelin, R.V.2
-
37
-
-
0032552880
-
The preference of tryptophan for membrane interfaces
-
Yau, W. M., Wimley, W. C., Gawrisch, K., and White, S. H. (1998) The preference of tryptophan for membrane interfaces Biochemistry 37, 14713-14718
-
(1998)
Biochemistry
, vol.37
, pp. 14713-14718
-
-
Yau, W.M.1
Wimley, W.C.2
Gawrisch, K.3
White, S.H.4
-
38
-
-
73149101885
-
MPEx: A tool for exploring membrane proteins
-
Snider, C., Jayasinghe, S., Hristova, K., and White, S. H. (2009) MPEx: A tool for exploring membrane proteins Protein Sci. 18, 2624-2628
-
(2009)
Protein Sci.
, vol.18
, pp. 2624-2628
-
-
Snider, C.1
Jayasinghe, S.2
Hristova, K.3
White, S.H.4
-
39
-
-
57049130459
-
Effects of tryptophan microenvironment, soluble domain, and vesicle size on the thermodynamics of membrane protein folding: Lessons from the transmembrane protein OmpA
-
Sanchez, K. M., Gable, J. E., Schlamadinger, D. E., and Kim, J. E. (2008) Effects of tryptophan microenvironment, soluble domain, and vesicle size on the thermodynamics of membrane protein folding: Lessons from the transmembrane protein OmpA Biochemistry 47, 12844-12852
-
(2008)
Biochemistry
, vol.47
, pp. 12844-12852
-
-
Sanchez, K.M.1
Gable, J.E.2
Schlamadinger, D.E.3
Kim, J.E.4
-
40
-
-
79961238544
-
Apolar surface area determines the efficiency of translocon-mediated membrane-protein integration into the endoplasmic reticulum
-
Ojemalm, K., Higuchi, T., Jiang, Y., Langel, U., Nilsson, I., White, S. H., Suga, H., and von Heijne, G. (2011) Apolar surface area determines the efficiency of translocon-mediated membrane-protein integration into the endoplasmic reticulum Proc. Natl. Acad. Sci. U.S.A. 108, E359-E364
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
-
-
Ojemalm, K.1
Higuchi, T.2
Jiang, Y.3
Langel, U.4
Nilsson, I.5
White, S.H.6
Suga, H.7
Von Heijne, G.8
-
41
-
-
0036147641
-
Toward genomic identification of β-barrel membrane proteins: Composition and architecture of known structures
-
Wimley, W. C. (2002) Toward genomic identification of β-barrel membrane proteins: Composition and architecture of known structures Protein Sci. 11, 301-312
-
(2002)
Protein Sci.
, vol.11
, pp. 301-312
-
-
Wimley, W.C.1
-
42
-
-
0942268924
-
Nonrandom structure in the urea-unfolded Escherichia coli outer membrane protein X (OmpX)
-
Tafer, H., Hiller, S., Hilty, C., Fernandez, C., and Wuthrich, K. (2004) Nonrandom structure in the urea-unfolded Escherichia coli outer membrane protein X (OmpX) Biochemistry 43, 860-869
-
(2004)
Biochemistry
, vol.43
, pp. 860-869
-
-
Tafer, H.1
Hiller, S.2
Hilty, C.3
Fernandez, C.4
Wuthrich, K.5
-
43
-
-
0036128797
-
Natively unfolded proteins: A point where biology waits for physics
-
Uversky, V. N. (2002) Natively unfolded proteins: A point where biology waits for physics Protein Sci. 11, 739-756
-
(2002)
Protein Sci.
, vol.11
, pp. 739-756
-
-
Uversky, V.N.1
-
44
-
-
0028936999
-
Staphylococcal Nuclease: A Showcase of M-Value Effects
-
Shortle, D. (1995) Staphylococcal Nuclease: A Showcase of M-Value Effects Adv. Protein Chem. 46, 217-247
-
(1995)
Adv. Protein Chem.
, vol.46
, pp. 217-247
-
-
Shortle, D.1
-
45
-
-
0027050824
-
Modeling the effects of mutations on the denatured states of proteins
-
Shortle, D., Chan, H. S., and Dill, K. A. (1992) Modeling the effects of mutations on the denatured states of proteins Protein Sci. 1, 201-215
-
(1992)
Protein Sci.
, vol.1
, pp. 201-215
-
-
Shortle, D.1
Chan, H.S.2
Dill, K.A.3
|