-
1
-
-
38349081152
-
Satellite DNAs between selfishness and functionality: structure, genomics and evolution of tandem repeats in centromeric (hetero)chromatin
-
Plohl M, Luchetti A, Mestrović N, Mantovani B, (2008) Satellite DNAs between selfishness and functionality: structure, genomics and evolution of tandem repeats in centromeric (hetero)chromatin. Gene 409: 72-82.
-
(2008)
Gene
, vol.409
, pp. 72-82
-
-
Plohl, M.1
Luchetti, A.2
Mestrović, N.3
Mantovani, B.4
-
2
-
-
0035839066
-
The centromere paradox: stable inheritance with rapidly evolving DNA
-
Henikoff S, Ahmad K, Malik HS, (2001) The centromere paradox: stable inheritance with rapidly evolving DNA. Science 293: 1098-1102.
-
(2001)
Science
, vol.293
, pp. 1098-1102
-
-
Henikoff, S.1
Ahmad, K.2
Malik, H.S.3
-
3
-
-
0345492218
-
Molecular drive in multigene families: How biological novelties arise, spread and are assimilated
-
Dover GA, (1986) Molecular drive in multigene families: How biological novelties arise, spread and are assimilated. Trends Genet 2: 159-165.
-
(1986)
Trends Genet
, vol.2
, pp. 159-165
-
-
Dover, G.A.1
-
4
-
-
0035812788
-
Genomic and genetic definition of a functional human centromere
-
Schueler MG, Higgins AW, Rudd MK, Gustashaw K, Willard HF, (2001) Genomic and genetic definition of a functional human centromere. Science 294: 109-115.
-
(2001)
Science
, vol.294
, pp. 109-115
-
-
Schueler, M.G.1
Higgins, A.W.2
Rudd, M.K.3
Gustashaw, K.4
Willard, H.F.5
-
5
-
-
77950586378
-
Centromeres convert but don't cross
-
Talbert PB, Henikoff S, (2010) Centromeres convert but don't cross. PLoS Biol 8: 1-5.
-
(2010)
PLoS Biol
, vol.8
, pp. 1-5
-
-
Talbert, P.B.1
Henikoff, S.2
-
6
-
-
77950579006
-
Widespread gene conversion in centromere cores
-
Shi J, Wolf SE, Burke JM, Presting GG, Ross-Ibarra J, et al. (2010) Widespread gene conversion in centromere cores. PLoS Biol 8: 1-10.
-
(2010)
PLoS Biol
, vol.8
, pp. 1-10
-
-
Shi, J.1
Wolf, S.E.2
Burke, J.M.3
Presting, G.G.4
Ross-Ibarra, J.5
-
7
-
-
0031903901
-
Evolution of satellite DNAs from the genus Palorus - experimental evidence for the library hypothesis
-
Meštrović N, Plohl M, Mravinac B, Ugarković, (1998) Evolution of satellite DNAs from the genus Palorus- experimental evidence for the library hypothesis. Mol Biol Evol 15: 1062-1068.
-
(1998)
Mol Biol Evol
, vol.15
, pp. 1062-1068
-
-
Meštrović, N.1
Plohl, M.2
Mravinac, B.3
Ugarković4
-
8
-
-
33750946255
-
Interplay of selective pressure and stochastic events directs evolution of the MEL172 satellite DNA library in root-knot nematodes
-
Meštrović N, Castagnone-Sereno P, Plohl M, (2006) Interplay of selective pressure and stochastic events directs evolution of the MEL172 satellite DNA library in root-knot nematodes. Mol Biol Evol 23: 2316-2325.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 2316-2325
-
-
Meštrović, N.1
Castagnone-Sereno, P.2
Plohl, M.3
-
9
-
-
57649236065
-
Relevance of satellite DNA genomic distribution in phylogenetic analysis: a case study with root-knot nematodes of the genus Meloidogyne
-
Meštrović N, Plohl M, Castagnone-Sereno P, (2009) Relevance of satellite DNA genomic distribution in phylogenetic analysis: a case study with root-knot nematodes of the genus Meloidogyne. Mol Phylogenet Evol 50: 204-208.
-
(2009)
Mol Phylogenet Evol
, vol.50
, pp. 204-208
-
-
Meštrović, N.1
Plohl, M.2
Castagnone-Sereno, P.3
-
10
-
-
33750932803
-
Transcription and evolutionary dynamics of the centromeric satellite repeat CentO in rice
-
Lee HRR, Neumann P, Macas J, Jiang J, (2006) Transcription and evolutionary dynamics of the centromeric satellite repeat CentO in rice. Mol Biol Evol 23: 2505-2520.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 2505-2520
-
-
Lee, H.R.R.1
Neumann, P.2
Macas, J.3
Jiang, J.4
-
11
-
-
0037316006
-
Centromere satellites from Arabidopsis populations?: maintenance of conserved and variable domains
-
Hall SE, Kettler G, Preuss D, (2003) Centromere satellites from Arabidopsis populations?: maintenance of conserved and variable domains. Genome Res 13: 195-205.
-
(2003)
Genome Res
, vol.13
, pp. 195-205
-
-
Hall, S.E.1
Kettler, G.2
Preuss, D.3
-
12
-
-
16644389418
-
The role of CENP-B and alpha-satellite DNA: de novo assembly and epigenetic maintenance of human centromeres
-
Masumoto H, Nakano M, Ohzeki JI, (2004) The role of CENP-B and alpha-satellite DNA: de novo assembly and epigenetic maintenance of human centromeres. Chromosome Res 12: 543-556.
-
(2004)
Chromosome Res
, vol.12
, pp. 543-556
-
-
Masumoto, H.1
Nakano, M.2
Ohzeki, J.I.3
-
13
-
-
49449094873
-
Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita
-
Abad P, Gouzy J, Aury JM, Castagnone-Sereno P, Danchin EGJ, et al. (2008) Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita. Nature Biotechnol 26: 909-915.
-
(2008)
Nature Biotechnol
, vol.26
, pp. 909-915
-
-
Abad, P.1
Gouzy, J.2
Aury, J.M.3
Castagnone-Sereno, P.4
Danchin, E.G.J.5
-
14
-
-
54149092490
-
Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism
-
Opperman CH, Bird DM, Williamson VM, Rokhsar DS, Burke M, et al. (2008) Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism. Proc Natl Acad Sci 105: 14802-14807.
-
(2008)
Proc Natl Acad Sci
, vol.105
, pp. 14802-14807
-
-
Opperman, C.H.1
Bird, D.M.2
Williamson, V.M.3
Rokhsar, D.S.4
Burke, M.5
-
15
-
-
70350221931
-
The genomes of root-knot nematodes
-
Bird DM, Williamson VM, Abad P, McCarter J, Danchin EGJ, et al. (2009) The genomes of root-knot nematodes. Annu Rev Phytopathol 47: 333-351.
-
(2009)
Annu Rev Phytopathol
, vol.47
, pp. 333-351
-
-
Bird, D.M.1
Williamson, V.M.2
Abad, P.3
McCarter, J.4
Danchin, E.G.J.5
-
16
-
-
0030803792
-
Interspecific hybridization of meiotic parthenogenetic Meloidogyne chitwoodi and M. fallax
-
Van der Beek JG, Karssen G, (1997) Interspecific hybridization of meiotic parthenogenetic Meloidogyne chitwoodi and M. fallax. Phytopathology 87: 1061-1066.
-
(1997)
Phytopathology
, vol.87
, pp. 1061-1066
-
-
van der Beek, J.G.1
Karssen, G.2
-
17
-
-
71049181729
-
A phylogenetic tree of nematodes based on about 1200 full-length small subunit ribosomal DNA sequences
-
Van Megen H, Van den Elsen S, Holterman M, Karssen G, Mooyman P, et al. (2009) A phylogenetic tree of nematodes based on about 1200 full-length small subunit ribosomal DNA sequences. Nematology 11: 927-950.
-
(2009)
Nematology
, vol.11
, pp. 927-950
-
-
van Megen, H.1
van den Elsen, S.2
Holterman, M.3
Karssen, G.4
Mooyman, P.5
-
18
-
-
0031934558
-
Unusual and strongly structured sequence variation in a complex satellite DNA family from the nematode Meloidogyne chitwoodi
-
Castagnone-Sereno P, Leroy H, Semblat JP, Leroy F, Abad P, et al. (1998) Unusual and strongly structured sequence variation in a complex satellite DNA family from the nematode Meloidogyne chitwoodi. J Mol Evol 46: 225-233.
-
(1998)
J Mol Evol
, vol.46
, pp. 225-233
-
-
Castagnone-Sereno, P.1
Leroy, H.2
Semblat, J.P.3
Leroy, F.4
Abad, P.5
-
19
-
-
0031822198
-
A new AluI satellite DNA in the root-knot nematode Meloidogyne fallax: relationships with satellites from the sympatric species M. hapla and M. chitwoodi
-
Castagnone-Sereno P, Semblat JP, Leroy F, Abad P, (1998) A new AluI satellite DNA in the root-knot nematode Meloidogyne fallax: relationships with satellites from the sympatric species M. hapla and M. chitwoodi. Mol Biol Evol 15: 1115-1122.
-
(1998)
Mol Biol Evol
, vol.15
, pp. 1115-1122
-
-
Castagnone-Sereno, P.1
Semblat, J.P.2
Leroy, F.3
Abad, P.4
-
22
-
-
0034033974
-
Identification of Meloidogyne chitwoodi, M. fallax and M. hapla based on SCAR-PCR: a powerful way of enabling reliable identification of populations or individuals that share common traits
-
Zijlstra C, (2000) Identification of Meloidogyne chitwoodi, M. fallax and M. hapla based on SCAR-PCR: a powerful way of enabling reliable identification of populations or individuals that share common traits. Eur J Plant Pathol 106: 283-290.
-
(2000)
Eur J Plant Pathol
, vol.106
, pp. 283-290
-
-
Zijlstra, C.1
-
24
-
-
0002051540
-
BioEdit- a user-friendly biological sequence alignment editor and analysis program for Windows 95-98-NT.pdf
-
Hall TA, (1999) BioEdit- a user-friendly biological sequence alignment editor and analysis program for Windows 95-98-NT.pdf. Nucleic Acids Symp Ser 41: 95-98.
-
(1999)
Nucleic Acids Symp Ser
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
25
-
-
0031574072
-
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG, (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
26
-
-
0037423834
-
Key-string segmentation algorithm and higher-order repeat 16mer (54 copies) in human alpha satellite DNA in chromosome 7
-
Rosandić M, Paar V, Basar I, (2003) Key-string segmentation algorithm and higher-order repeat 16mer (54 copies) in human alpha satellite DNA in chromosome 7. J Theor Biol 221: 29-37.
-
(2003)
J Theor Biol
, vol.221
, pp. 29-37
-
-
Rosandić, M.1
Paar, V.2
Basar, I.3
-
27
-
-
0032972599
-
DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis
-
Rozas J, Rozas R, (1999) DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15: 174-175.
-
(1999)
Bioinformatics
, vol.15
, pp. 174-175
-
-
Rozas, J.1
Rozas, R.2
-
29
-
-
3242810318
-
MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
-
Kumar S, Tamura K, Nei M, (2004) MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Brief Bioinform 5: 150-163.
-
(2004)
Brief Bioinform
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
30
-
-
67749094965
-
New insights into centromere organization and evolution from the white-cheeked gibbon and marmoset
-
Cellamare A, Catacchio CR, Alkan C, Giannuzzi G, Antonacci F, et al. (2009) New insights into centromere organization and evolution from the white-cheeked gibbon and marmoset. Mol Biol Evol 26: 1889-1900.
-
(2009)
Mol Biol Evol
, vol.26
, pp. 1889-1900
-
-
Cellamare, A.1
Catacchio, C.R.2
Alkan, C.3
Giannuzzi, G.4
Antonacci, F.5
-
31
-
-
34848890323
-
Organization and evolution of primate centromeric DNA from whole-genome shotgun sequence data
-
Alkan C, Ventura M, Archidiacono N, Rocchi M, Sahinalp SC, et al. (2007) Organization and evolution of primate centromeric DNA from whole-genome shotgun sequence data. PLoS Comput Biol 3: 1807-1818.
-
(2007)
PLoS Comput Biol
, vol.3
, pp. 1807-1818
-
-
Alkan, C.1
Ventura, M.2
Archidiacono, N.3
Rocchi, M.4
Sahinalp, S.C.5
-
32
-
-
4744339350
-
Analysis of the centromeric regions of the human genome assembly
-
Rudd MK, Willard HF, (2004) Analysis of the centromeric regions of the human genome assembly. Trends Genet 20: 529-533.
-
(2004)
Trends Genet
, vol.20
, pp. 529-533
-
-
Rudd, M.K.1
Willard, H.F.2
-
33
-
-
30044449656
-
The evolutionary dynamics of alpha-satellite
-
Rudd MK, Wray GA, Willard HF, (2006) The evolutionary dynamics of alpha-satellite. Genome Res 16: 88-96.
-
(2006)
Genome Res
, vol.16
, pp. 88-96
-
-
Rudd, M.K.1
Wray, G.A.2
Willard, H.F.3
-
34
-
-
0032076660
-
Something from nothing: the evolution and utility of satellite repeats
-
Csink AK, Henikoff S, (1998) Something from nothing: the evolution and utility of satellite repeats. Trends Genet 14: 200-204.
-
(1998)
Trends Genet
, vol.14
, pp. 200-204
-
-
Csink, A.K.1
Henikoff, S.2
-
35
-
-
0002813525
-
Properties of CENP-B and its target sequence in a satellite DNA
-
Masumoto H, Yoda K, Ikeno M, Kitagawa K, Muro Y, et al. (1993) Properties of CENP-B and its target sequence in a satellite DNA. In: In: Chromosome Segregation and Aneuploidy. NATO ASI Ser. H 72, Vol. Baldev KV, editor. 72: 31-43.
-
(1993)
In: Chromosome Segregation and Aneuploidy. NATO ASI Ser. H 72, Vol
, vol.72
, pp. 31-43
-
-
Masumoto, H.1
Yoda, K.2
Ikeno, M.3
Kitagawa, K.4
Muro, Y.5
Baldev, K.V.6
-
36
-
-
0026376695
-
Role of the centromere/kinetochore in cell cycle control
-
Earnshaw WC, Bernat RL, Cooke CA, Rothfield NF, (1991) Role of the centromere/kinetochore in cell cycle control. Cold Spring Harbor Symp Quant Biol 56: 675-685.
-
(1991)
Cold Spring Harbor Symp Quant Biol
, vol.56
, pp. 675-685
-
-
Earnshaw, W.C.1
Bernat, R.L.2
Cooke, C.A.3
Rothfield, N.F.4
-
37
-
-
0033954076
-
Uterine dysfunction and genetic modifiers in centromere protein B-deficient mice
-
Fowler KJ, Hudson DF, Salamonsen L a, Edmondson SR, Earle E, et al. (2000) Uterine dysfunction and genetic modifiers in centromere protein B-deficient mice. Genome Res 10: 30-41.
-
(2000)
Genome Res
, vol.10
, pp. 30-41
-
-
Fowler, K.J.1
Hudson, D.F.2
Salamonsen, L.3
Edmondson, S.R.4
Earle, E.5
-
38
-
-
0029050395
-
CENP-B binds a novel centromeric sequence in the Asian mouse Mus caroli
-
Kipling D, Mitchell AR, Masumoto H, Wilson HE, Nicol L, et al. (1995) CENP-B binds a novel centromeric sequence in the Asian mouse Mus caroli. Mol Cell Biol 15: 4009-4020.
-
(1995)
Mol Cell Biol
, vol.15
, pp. 4009-4020
-
-
Kipling, D.1
Mitchell, A.R.2
Masumoto, H.3
Wilson, H.E.4
Nicol, L.5
-
39
-
-
78651484455
-
Genome-wide characterization of centromeric satellites from multiple mammalian genomes
-
Alkan C, Cardone MF, Catacchio CR, Antonacci F, O'Brien SJ, et al. (2011) Genome-wide characterization of centromeric satellites from multiple mammalian genomes. Genome Res 21: 137-145.
-
(2011)
Genome Res
, vol.21
, pp. 137-145
-
-
Alkan, C.1
Cardone, M.F.2
Catacchio, C.R.3
Antonacci, F.4
O'Brien, S.J.5
-
40
-
-
0032530596
-
Interspersed centromeric element with a CENP-B box-like motif in Chironomus pallidivittatus
-
López CC, Edström JE, (1998) Interspersed centromeric element with a CENP-B box-like motif in Chironomus pallidivittatus. Nucleic Acids Res 26: 4168-4172.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 4168-4172
-
-
López, C.C.1
Edström, J.E.2
-
41
-
-
17644388086
-
Molecular characterization of the first satellite DNA with CENP-B and CDEIII motifs in the bat Pipistrellus kuhli
-
Fantaccione S, Pontecorvo G, Zampella V, (2005) Molecular characterization of the first satellite DNA with CENP-B and CDEIII motifs in the bat Pipistrellus kuhli. FEBS letters 579: 2519-2527.
-
(2005)
FEBS Letters
, vol.579
, pp. 2519-2527
-
-
Fantaccione, S.1
Pontecorvo, G.2
Zampella, V.3
-
42
-
-
0031127039
-
Centromeres, CENP-B and Tigger too
-
Kipling D, Warburton PE, (1997) Centromeres, CENP-B and Tigger too. Trends Genet 13: 141-145.
-
(1997)
Trends Genet
, vol.13
, pp. 141-145
-
-
Kipling, D.1
Warburton, P.E.2
-
43
-
-
38349103460
-
Convergent domestication of pogo-like transposases into centromere-binding proteins in fission yeast and mammals
-
Casola C, Hucks D, Feschotte C, (2008) Convergent domestication of pogo-like transposases into centromere-binding proteins in fission yeast and mammals. Mol Biol Evol 25: 29-41.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 29-41
-
-
Casola, C.1
Hucks, D.2
Feschotte, C.3
-
44
-
-
45349089291
-
Centromere mitotic recombination in mammalian cells
-
Jaco I, Canela A, Vera E, Blasco M a, (2008) Centromere mitotic recombination in mammalian cells. J Cell Biol 181: 885-892.
-
(2008)
J Cell Biol
, vol.181
, pp. 885-892
-
-
Jaco, I.1
Canela, A.2
Vera, E.3
Blasco, M.4
-
45
-
-
67349141483
-
Evolutionary dynamics and sites of illegitimate recombination revealed in the interspersion and sequence junctions of two nonhomologous satellite DNAs in cactophilic Drosophila species
-
Kuhn GCS, Teo CH, Schwarzacher T, Heslop-Harrison JS, (2009) Evolutionary dynamics and sites of illegitimate recombination revealed in the interspersion and sequence junctions of two nonhomologous satellite DNAs in cactophilic Drosophila species. Heredity 102: 453-464.
-
(2009)
Heredity
, vol.102
, pp. 453-464
-
-
Kuhn, G.C.S.1
Teo, C.H.2
Schwarzacher, T.3
Heslop-Harrison, J.S.4
-
46
-
-
0027454554
-
Nonrandom localization of recombination events in human alpha satellite repeat unit variants: implications for higher-order structural characteristics within centromeric heterochromatin
-
Warburton PE, Waye JS, Willard HF, (1993) Nonrandom localization of recombination events in human alpha satellite repeat unit variants: implications for higher-order structural characteristics within centromeric heterochromatin. Mol Cell Biol 13: 6520-6529.
-
(1993)
Mol Cell Biol
, vol.13
, pp. 6520-6529
-
-
Warburton, P.E.1
Waye, J.S.2
Willard, H.F.3
-
47
-
-
25444495480
-
Differential rates of local and global homogenization in centromere satellites from Arabidopsis relatives
-
Hall SE, Luo S, Hall AE, Preuss D, (2005) Differential rates of local and global homogenization in centromere satellites from Arabidopsis relatives. Genetics 170: 1913-1927.
-
(2005)
Genetics
, vol.170
, pp. 1913-1927
-
-
Hall, S.E.1
Luo, S.2
Hall, A.E.3
Preuss, D.4
-
48
-
-
77955006467
-
Parallelism in evolution of highly repetitive DNAs in sibling species
-
Mravinac B, Plohl M, (2010) Parallelism in evolution of highly repetitive DNAs in sibling species. Mol Biol Evol 27: 1857-1867.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 1857-1867
-
-
Mravinac, B.1
Plohl, M.2
|