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Volumn 10, Issue , 2013, Pages

Characterization of Farmington virus, a novel virus from birds that is distantly related to members of the family Rhabdoviridae

Author keywords

Family Rhabdoviridae; Farmington virus (FARV); Next generation sequencing; Phylogeny

Indexed keywords

STRUCTURAL PROTEIN;

EID: 84879475185     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/1743-422X-10-219     Document Type: Article
Times cited : (13)

References (33)
  • 4
    • 0018233480 scopus 로고
    • How do eucaryotic ribosomes select initiation regions in messenger RNA?
    • 10.1016/0092-8674(78)90039-9 215319
    • How do eucaryotic ribosomes select initiation regions in messenger RNA? Kozak M, Cell 1978 15 1109 1123 10.1016/0092-8674(78)90039-9 215319
    • (1978) Cell , vol.15 , pp. 1109-1123
    • Kozak, M.1
  • 5
    • 81555205822 scopus 로고    scopus 로고
    • Rhabdovirus accessory genes
    • 10.1016/j.virusres.2011.09.004 21933691
    • Rhabdovirus accessory genes. Walker PJ, Dietzgen RG, Joubert DA, Blasdell KR, Virus Res 2011 162 110 125 10.1016/j.virusres.2011.09.004 21933691
    • (2011) Virus Res , vol.162 , pp. 110-125
    • Walker, P.J.1    Dietzgen, R.G.2    Joubert, D.A.3    Blasdell, K.R.4
  • 6
    • 84862221167 scopus 로고    scopus 로고
    • SMART 7: Recent updates to the protein domain annotation resource
    • 10.1093/nar/gkr931 22053084
    • SMART 7: recent updates to the protein domain annotation resource. Letunic I, Doerks T, Bork P, Nucleic Acids Res 2012 40 302 D305 10.1093/nar/gkr931 22053084
    • (2012) Nucleic Acids Res , vol.40
    • Letunic, I.1    Doerks, T.2    Bork, P.3
  • 7
    • 0032568655 scopus 로고    scopus 로고
    • SMART, a simple modular architecture research tool: Identification of signaling domains
    • 10.1073/pnas.95.11.5857 9600884
    • SMART, a simple modular architecture research tool: identification of signaling domains. Schultz J, Milpetz F, Bork P, Ponting CP, PNAS 1998 95 5857 5864 10.1073/pnas.95.11.5857 9600884
    • (1998) PNAS , vol.95 , pp. 5857-5864
    • Schultz, J.1    Milpetz, F.2    Bork, P.3    Ponting, C.P.4
  • 8
    • 0033050750 scopus 로고    scopus 로고
    • A proline-rich motif within the matrix protein of vesicular stomatitis virus and rabies virus interacts with WW domains of cellular proteins: Implications for viral budding
    • A proline-rich motif within the matrix protein of vesicular stomatitis virus and rabies virus interacts with WW domains of cellular proteins: implications for viral budding. Harty RN, Paragas J, Sudon M, Palese P, J Virol 1999 73 2929 2931
    • (1999) J Virol , vol.73 , pp. 2929-2931
    • Harty, R.N.1    Paragas, J.2    Sudon, M.3    Palese, P.4
  • 9
    • 1542377646 scopus 로고    scopus 로고
    • Budding of PPxY-containing rhabdoviruses is not dependent on host proteins TGS101 and VPS4A
    • 10.1128/JVI.78.6.2657-2665.2004 14990685
    • Budding of PPxY-containing rhabdoviruses is not dependent on host proteins TGS101 and VPS4A. Irie T, Licata JM, McGettigan JP, Schnell MJ, Harty RN, J Virol 2004 78 2657 2665 10.1128/JVI.78.6.2657-2665.2004 14990685
    • (2004) J Virol , vol.78 , pp. 2657-2665
    • Irie, T.1    Licata, J.M.2    McGettigan, J.P.3    Schnell, M.J.4    Harty, R.N.5
  • 10
    • 0033775605 scopus 로고    scopus 로고
    • Mutations in the PPPY motif of vesicular stomatitis virus matrix protein reduce virus budding by inhibiting a late step in virion release
    • 10.1128/JVI.74.21.9818-9827.2000 11024108
    • Mutations in the PPPY motif of vesicular stomatitis virus matrix protein reduce virus budding by inhibiting a late step in virion release. Jayaker HR, Murti KG, Whitt MA, J Virol 2000 74 9818 9827 10.1128/JVI.74.21.9818-9827.2000 11024108
    • (2000) J Virol , vol.74 , pp. 9818-9827
    • Jayaker, H.R.1    Murti, K.G.2    Whitt, M.A.3
  • 11
    • 84866143908 scopus 로고    scopus 로고
    • Ephemeroviruses: Arthropod-borne rhabdoviruses of ruminants with large and complex genomes
    • Norwich: Horizon Scientific Press Dietzgen RG, Kuzmin IV
    • Ephemeroviruses: arthropod-borne rhabdoviruses of ruminants with large and complex genomes. Walker PJ, Blasdell KR, Joubert DA, Rhabdoviruses: molecular taxonomy, evolution, genetics Norwich: Horizon Scientific Press, Dietzgen RG, Kuzmin IV, 2012
    • (2012) Rhabdoviruses: Molecular Taxonomy, Evolution, Genetics
    • Walker, P.J.1    Blasdell, K.R.2    Joubert, D.A.3
  • 12
    • 0033775605 scopus 로고    scopus 로고
    • Mutations in the PPPY motif of vesicular stomatitis virus matrix protein reduce virus budding by inhibiting a late step in virion release
    • 10.1128/JVI.74.21.9818-9827.2000 11024108
    • Mutations in the PPPY motif of vesicular stomatitis virus matrix protein reduce virus budding by inhibiting a late step in virion release. Jayakar HR, Murti KG, Whitt MA, J Virol 2000 74 9818 9827 10.1128/JVI.74.21.9818-9827.2000 11024108
    • (2000) J Virol , vol.74 , pp. 9818-9827
    • Jayakar, H.R.1    Murti, K.G.2    Whitt, M.A.3
  • 13
    • 0033050750 scopus 로고    scopus 로고
    • A proline-rich motif within the matrix protein of vesicular stomatitis virus and rabies virus interacts with WW domains of cellular proteins: Implications for viral budding
    • 10074141
    • A proline-rich motif within the matrix protein of vesicular stomatitis virus and rabies virus interacts with WW domains of cellular proteins: implications for viral budding. Harty RN, Paragas J, Sudol M, Palese P, J Virol 1999 73 2921 2929 10074141
    • (1999) J Virol , vol.73 , pp. 2921-2929
    • Harty, R.N.1    Paragas, J.2    Sudol, M.3    Palese, P.4
  • 15
    • 33745974537 scopus 로고    scopus 로고
    • Crystal structure of hte low-pH form of the vesicular stomatitis virus glycoprotein G
    • 10.1126/science.1127683 16840692
    • Crystal structure of hte low-pH form of the vesicular stomatitis virus glycoprotein G. Roche S, Bressanelli S, Rey FA, Gaudin Y, Science 2006 313 187 191 10.1126/science.1127683 16840692
    • (2006) Science , vol.313 , pp. 187-191
    • Roche, S.1    Bressanelli, S.2    Rey, F.A.3    Gaudin, Y.4
  • 16
    • 33846959065 scopus 로고    scopus 로고
    • Structure of the prefusion form of the vesicular stomatitis virus glycoprotein G
    • 10.1126/science.1135710 17289996
    • Structure of the prefusion form of the vesicular stomatitis virus glycoprotein G. Roche S, Rey FA, Gaudin Y, Bressanelli S, Science 2007 315 843 848 10.1126/science.1135710 17289996
    • (2007) Science , vol.315 , pp. 843-848
    • Roche, S.1    Rey, F.A.2    Gaudin, Y.3    Bressanelli, S.4
  • 17
    • 0032929570 scopus 로고    scopus 로고
    • Deduced structural model for animal rhabdovirus glycoproteins
    • 10355768
    • Deduced structural model for animal rhabdovirus glycoproteins. Walker PJ, Kongsuwan K, J Gen Virol 1999 80 1211 1220 10355768
    • (1999) J Gen Virol , vol.80 , pp. 1211-1220
    • Walker, P.J.1    Kongsuwan, K.2
  • 18
    • 0025322445 scopus 로고
    • Sequence comparison of five polymerases (L proteins) of unsegmented negative-stranded RNA viruses: Theoretical assignment of functional domains
    • 10.1099/0022-1317-71-5-1153 2161049
    • Sequence comparison of five polymerases (L proteins) of unsegmented negative-stranded RNA viruses: theoretical assignment of functional domains. Poch O, Blumberg BM, Bougueleret L, Tordo N, J Gen Virol 1990 71 1153 1162 10.1099/0022-1317-71-5-1153 2161049
    • (1990) J Gen Virol , vol.71 , pp. 1153-1162
    • Poch, O.1    Blumberg, B.M.2    Bougueleret, L.3    Tordo, N.4
  • 19
    • 78650526378 scopus 로고    scopus 로고
    • Molecular architecture of the vesicular stomatitis virus RNA polymerase
    • 10.1073/pnas.1013559107 21041632
    • Molecular architecture of the vesicular stomatitis virus RNA polymerase. Rahmeh AA, Schenk AD, Danek EI, Kranzusch PJ, Liang B, Walz T, Whelan SP, PNAS 2010 107 20075 20080 10.1073/pnas.1013559107 21041632
    • (2010) PNAS , vol.107 , pp. 20075-20080
    • Rahmeh, A.A.1    Schenk, A.D.2    Danek, E.I.3    Kranzusch, P.J.4    Liang, B.5    Walz, T.6    Whelan, S.P.7
  • 20
    • 0031765540 scopus 로고    scopus 로고
    • Studies on the rabies virus RNA polymerase: 2. Possible relationships between the two forms of the non-catalytic subunit (P protein)
    • 9886149
    • Studies on the rabies virus RNA polymerase: 2. Possible relationships between the two forms of the non-catalytic subunit (P protein). Takamatsu F, Asakawa N, Morimoto K, Takeuchi K, Eriguchi Y, Toriumi H, Kawai A, Microbiol Immunol 1998 42 761 771 9886149
    • (1998) Microbiol Immunol , vol.42 , pp. 761-771
    • Takamatsu, F.1    Asakawa, N.2    Morimoto, K.3    Takeuchi, K.4    Eriguchi, Y.5    Toriumi, H.6    Kawai, A.7
  • 21
    • 34547489084 scopus 로고    scopus 로고
    • Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments
    • 10.1080/10635150701472164 17654362
    • Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Talavera G, Castresana J, Syst Biol 2007 56 564 577 10.1080/10635150701472164 17654362
    • (2007) Syst Biol , vol.56 , pp. 564-577
    • Talavera, G.1    Castresana, J.2
  • 23
    • 0028965210 scopus 로고
    • Adelaide River virus nucleoprotein gene: Analysis of phylogenetic relationships of ephemeroviruses and other rhabdoviruses
    • 9049348
    • Adelaide River virus nucleoprotein gene: analysis of phylogenetic relationships of ephemeroviruses and other rhabdoviruses. Wang Y, Cowley JA, Walker PJ, J Gen Virol 1995 76 Pt 4 995 999 9049348
    • (1995) J Gen Virol , vol.76 , Issue.PART 4 , pp. 995-999
    • Wang, Y.1    Cowley, J.A.2    Walker, P.J.3
  • 24
    • 26244450003 scopus 로고    scopus 로고
    • Phylogenetic relationships among rhabdoviruses inferred using the L polymerase gene
    • 10.1099/vir.0.81128-0 16186241
    • Phylogenetic relationships among rhabdoviruses inferred using the L polymerase gene. Bourhy H, Cowley JA, Larrous F, Holmes EC, Walker PJ, J Gen Virol 2005 86 2849 2858 10.1099/vir.0.81128-0 16186241
    • (2005) J Gen Virol , vol.86 , pp. 2849-2858
    • Bourhy, H.1    Cowley, J.A.2    Larrous, F.3    Holmes, E.C.4    Walker, P.J.5
  • 26
    • 70449217974 scopus 로고
    • Techniques for hemagglutination and hemagglutination-inhibition with arthropod-borne viruses
    • Techniques for hemagglutination and hemagglutination-inhibition with arthropod-borne viruses. Clarke DH, Casals J, AmJTrop Med Hyg 1958 7 561 573
    • (1958) AmJTrop Med Hyg , vol.7 , pp. 561-573
    • Clarke, D.H.1    Casals, J.2
  • 27
    • 0001791263 scopus 로고
    • Diagnostic procedures for VIral rickettsial and chlamydial infections
    • Washington: American Public Health Association Schmidt NJ, Emmons RW
    • Diagnostic procedures for VIral rickettsial and chlamydial infections. Beaty B, Calisher CH, Shope RE, Arboviruses Washington: American Public Health Association, Schmidt NJ, Emmons RW, 1989
    • (1989) Arboviruses
    • Beaty, B.1    Calisher, C.H.2    Shope, R.E.3
  • 28
    • 0020682039 scopus 로고
    • Antigenic relationship among rhabdoviruses infecting terrestial vertebrates
    • 10.1099/0022-1317-64-1-169 6337233
    • Antigenic relationship among rhabdoviruses infecting terrestial vertebrates. Tesh RB, da Travassos RAP, da Rosa JS T, J Gen Virol 1983 64 169 176 10.1099/0022-1317-64-1-169 6337233
    • (1983) J Gen Virol , vol.64 , pp. 169-176
    • Tesh, R.B.1    Da Travassos, R.A.P.2    Da Rosa Js, T.3
  • 32
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • 10.1093/nar/gkh340 15034147
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput. Edgar RC, Nucleic Acids Res 2004 32 1792 1797 10.1093/nar/gkh340 15034147
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 33
    • 77950806408 scopus 로고    scopus 로고
    • New algorithms and methods to estimate maximum-likelihood phylogenies assessing the performance of PhyML
    • 10.1093/sysbio/syq010 20525638
    • New algorithms and methods to estimate maximum-likelihood phylogenies assessing the performance of PhyML. Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O, Syst Biol 2010 59 307 321 10.1093/sysbio/syq010 20525638
    • (2010) Syst Biol , vol.59 , pp. 307-321
    • Guindon, S.1    Dufayard, J.F.2    Lefort, V.3    Anisimova, M.4    Hordijk, W.5    Gascuel, O.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.