Chryseobacterium frigidisoli sp. nov., a psychrotolerant species of the family Flavobacteriaceae isolated from sandy permafrost from a glacier forefield

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue PART7, 2013, Pages 2666-2671

  Bajerski, Felizitas ^a   Ganzert, Lars ^b,e   Mangelsdorf, Kai ^c   Padur, Lisa ^a   Lipski, André ^d   Wagner, Dirk ^a,c  

^a ALFRED WEGENER INSTITUTE FOR POLAR AND MARINE RESEARCH   (Germany)

^b UNIVERSITY OF TROMSØ   (Norway)

^c GFZ GERMAN RESEARCH CENTRE FOR GEOSCIENCES   (Germany)

^d UNIVERSITY OF BONN   (Germany)

^e FINNISH FOREST RESEARCH INSTITUTE   (Finland)

Author keywords

[No Author keywords available]

Indexed keywords

CADAVERINE; CARBOHYDRATE; CASEIN HYDROLYSATE; ETHANOLAMINE DERIVATIVE; FATTY ACID; INDOLE; MENAQUINONE; ORNITHINE; POLYAMINE; PUTRESCINE; SPERMIDINE; SPERMINE; SYMHOMOSPERMIDINE; TRYPTOPHAN; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GROWTH; BACTERIUM ISOLATION; CARBON SOURCE; CHRYSEOBACTERIUM; CHRYSEOBACTERIUM FRIGIDISOLI; FLAVOBACTERIACEAE; GENOTYPE; GLACIER; NONHUMAN; NUCLEOTIDE SEQUENCE; PERMAFROST; PHENOTYPE; PRIORITY JOURNAL; TEMPERATURE DEPENDENCE; UNINDEXED SEQUENCE;

ANTARCTIC REGIONS; BACTERIAL TYPING TECHNIQUES; CHRYSEOBACTERIUM; DNA, BACTERIAL; FATTY ACIDS; ICE COVER; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYAMINES; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; VITAMIN K 2;

BACTERIA (MICROORGANISMS); CHRYSEOBACTERIUM; FLAVOBACTERIACEAE; NEGIBACTERIA;

EID: 84879418852     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.046904-0     Document Type: Article

References (43)

1. Bajerski, F., Ganzert, L., Mangelsdorf, K., Lipski, A. & Wagner, D. (2011). Cryobacterium arcticum sp. nov., a psychrotolerant bacterium from an Arctic soil. Int J Syst Evol Microbiol 61, 1849-1853.
2. Benmalek, Y., Cayol, J.-L., Bouanane, N. A., Hacene, H., Fauque, G. & Fardeau, M.-L. (2010). Chryseobacterium solincola sp. nov., isolated from soil. Int J Syst Evol Microbiol 60, 1876-1880.
3. Busse, J. & Auling, G. (1988). Polyamine pattern as a chemotaxonomic marker within the Proteobacteria. Syst Appl Microbiol 11, 1-8.
4. Busse, H.-J., Bunka, S., Hensel, A. & Lubitz, W. (1997). Discrimination of members of the family Pasteurellaceae based on polyamine patterns. Int J Syst Bacteriol 47, 698-708.
5. Dojka, M. A., Hugenholtz, P., Haack, S. K. & Pace, N. R. (1998). Microbial diversity in a hydrocarbon-and chlorinated-solventcontaminated aquifer undergoing intrinsic bioremediation. Appl Environ Microbiol 64, 3869-3877.
6. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
7. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
8. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
9. Ganzert, L., Bajerski, F., Mangelsdorf, K., Lipski, A. & Wagner, D. (2011a). Leifsonia psychrotolerans sp. nov., a psychrotolerant species of the family Microbacteriaceae from Livingston Island, Antarctica. Int J Syst Evol Microbiol 61, 1938-1943.
10. Ganzert, L., Bajerski, F., Mangelsdorf, K., Lipski, A. & Wagner, D. (2011b). Arthrobacter livingstonensis sp. nov. and Arthrobacter cryotolerans sp. nov., salt-tolerant and psychrotolerant species from Antarctic soil. Int J Syst Evol Microbiol 61, 979-984.
11. Gram, H. (1884). Über die isolierte Färbung der Schizomyceten in Schnitt-und Trockenpräparaten. Fortschr Med 2, 185-189.
12. Herzog, P., Winkler, I., Wolking, D., Kämpfer, P. & Lipski, A. (2008). Chryseobacterium ureilyticum sp. nov., Chryseobacterium gambrini sp. nov., Chryseobacterium pallidum sp. nov. and Chryseobacterium molle sp. nov., isolated from beer-bottling plants. Int J Syst Evol Microbiol 58, 26-33.
13. Hoaki, T., Nishijima, M., Kato, M., Adachi, K., Mizobuchi, S., Hanzawa, N. & Maruyama, T. (1994). Growth requirements of hyperthermophilic sulfur-dependent heterotrophic archaea isolated from a shallow submarine geothermal system with reference to their essential amino acids. Appl Environ Microbiol 60, 2898-2904.
14. Holmes, B., Owen, R. J., Steigerwalt, A. G. & Brenner, D. J. (1984). Flavobacterium gleum, a new species found in human clinical specimens. Int J Syst Bacteriol 34, 21-25.
15. Hu, H.-Y., Fujie, K. & Urano, K. (1999). Development of a novel solid phase extraction method for the analysis of bacterial quinones in activated sludge with a higher reliability. J Biosci Bioeng 87, 378-382.
16. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
17. Kämpfer, P., Lodders, N., Vaneechoutte, M. & Wauters, G. (2009a). Transfer of Sejongia antarctica, Sejongia jeonii and Sejongia marina to the genus Chryseobacterium as Chryseobacterium antarcticum comb. nov., Chryseobacterium jeonii comb. nov. and Chryseobacterium marinum comb. nov. Int J Syst Evol Microbiol 59, 2238-2240.
18. Kämpfer, P., Vaneechoutte, M., Lodders, N., De Baere, T., Avesani, V., Janssens, M., Busse, H.-J. & Wauters, G. (2009b). Description of Chryseobacterium anthropi sp. nov. to accommodate clinical isolates biochemically similar to Kaistella koreensis and Chryseobacterium haifense, proposal to reclassify Kaistella koreensis as Chryseobacterium koreense comb. nov. and emended description of the genus Chryseobacterium. Int J Syst Evol Microbiol 59, 2421-2428.
19. Kim, K. K., Lee, K. C., Oh, H.-M. & Lee, J.-S. (2008). Chryseobacterium aquaticum sp. nov., isolated from a water reservoir. Int J Syst Evol Microbiol 58, 533-537.
20. Kovacs, N. (1956). Identification of Pseudomonas pyocyanea by the oxidase reaction. Nature 178, 703.
21. Lane, D. J., Pace, B., Olsen, G. J., Stahl, D. A., Sogin, M. L. & Pace, N. R. (1985). Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses. Proc Natl Acad Sci U S A 82, 6955-6959.
22. Lee, K., Lee, H. K., Choi, T.-H. & Cho, J.-C. (2007). Sejongia marina sp. nov., isolated from Antarctic seawater. Int J Syst Evol Microbiol 57, 2917-2921.
23. Loeffler, F. & Frosch, P. (1898). Berichte der Kommision zur Erforschung der Maul-und Klauenseuche bei dem Institut für Infektionskrankheiten in Berlin. Zbl Bakt I/Orig, 371-391.
24. Loveland-Curtze, J., Miteva, V. & Brenchley, J. (2010). Novel ultramicrobacterial isolates from a deep Greenland ice core represent a proposed new species, Chryseobacterium greenlandense sp. nov. Extremophiles 14, 61-69.
25. Ludwig, W., Strunk, O., Westram, R., Richter, L., Meier, H., Yadhukumar, Buchner, A., Lai, T., Steppi, S. & other authors (2004). ARB: a software environment for sequence data. Nucleic Acids Res 32, 1363-1371.
26. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
27. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
28. Pires, C., Carvalho, M. F., De Marco, P., Magan, N. & Castro, P. M. L. (2010). Chryseobacterium palustre sp. nov. and Chryseobacterium humi sp. nov., isolated from industrially contaminated sediments. Int J Syst Evol Microbiol 60, 402-407.
29. Pruesse, E., Quast, C., Knittel, K., Fuchs, B. M., Ludwig, W., Peplies, J. & Glöckner, F. O. (2007). SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Res 35, 7188-7196.
30. Reasoner, D. J. & Geldreich, E. E. (1985). A new medium for the enumeration and subculture of bacteria from potable water. Appl Environ Microbiol 49, 1-7.
31. Rhuland, L. E., Work, E., Denman, R. F. & Hoare, D. S. (1955). The behaviour of the isomers of 2,6-diaminopimelic acid on paper chromatograms. J Am Chem Soc 77, 4844-4846.
32. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
33. Schröder, H. (1991). Mikrobiologisches Praktikum, 5 edn. Berlin: Volk und Wissen Verlag.
34. Schumann, P. (2011). Peptidoglycan Structure. In Taxonomy of Prokaryotes, Methods in Microbiology, vol. 38, pp. 101-129. Edited by F. Rainey & A. Oren London: Academic Press.
35. Stackebrandt, E. & Ebers, J. (2006). Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 4, 152-155.
36. Stolz, A., Busse, H.-J. & Kämpfer, P. (2007). Pseudomonas knackmussii sp. nov. Int J Syst Evol Microbiol 57, 572-576.
37. Tamaoka, J. & Komagata, K. (1984). Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol Lett 25, 125-128.
38. Vandamme, P., Bernadet, J.-F., Segers, P., Kerstens, K. & Holmes, B. (1994). Notes: new perspectives in the classification of the Flavobacteria: description of Chryseobacterium gen. nov., Bergeyella gen. nov., and Empedobacter nom. rev. Int J Syst Bacteriol 44, 827-831.
39. Weon, H.-Y., Kim, B.-Y., Yoo, S.-H., Kwon, S.-W., Stackebrandt, E. & Go, S.-J. (2008). Chryseobacterium soli sp. nov. and Chryseobacterium jejuense sp. nov., isolated from soil samples from Jeju, Korea. Int J Syst Evol Microbiol 58, 470-473.
40. Wirtz, R. (1908). Eine einfache Art der Sporenfärbung. Zbl Bakt Hyg I Abt Orig 46, 727-728.
41. Yi, H., Yoon, H. I. & Chun, J. (2005). Sejongia antarctica gen. nov., sp. nov. and Sejongia jeonii sp. nov., isolated from the Antarctic. Int J Syst Evol Microbiol 55, 409-416.
42. Zhou, Y., Dong, J., Wang, X., Huang, X., Zhang, K.-Y., Zhang, Y.-Q., Guo, Y.-F., Lai, R. & Li, W.-J. (2007). Chryseobacterium flavum sp. nov., isolated from polluted soil. Int J Syst Evol Microbiol 57, 1765-1769.
43. Zink, K.-G. & Mangelsdorf, K. (2004). Efficient and rapid method for extraction of intact phospholipids from sediments combined with molecular structure elucidation using LC-ESI-MS-MS analysis. Anal Bioanal Chem 380, 798-812.