Microbial characterization of basalt formation waters targeted for geological carbon sequestration

FEMS Microbiology Ecology

Volumn 85, Issue 1, 2013, Pages 62-73

  Lavalleur, Heather J ^a   Colwell, Frederick S ^a  

^a OREGON STATE UNIVERSITY   (United States)

Author keywords

Basalt; Carbon sequestration; Geomicrobiology; Pyrosequencing; Terrestrial subsurface

Indexed keywords

SILICATE; WATER;

BACTERIUM; BASALT; BASELINE CONDITIONS; CARBON DIOXIDE; CARBON EMISSION; CARBON SEQUESTRATION; GEOMICROBIOLOGY; MICROBIAL ACTIVITY; MICROBIAL COMMUNITY; POLYMERASE CHAIN REACTION;

ARCHAEON; ARTICLE; BACTERIUM; BASALT; CARBON SEQUESTRATION; CHEMISTRY; CLASSIFICATION; GENETICS; GEOGRAPHIC AND GEOLOGICAL PHENOMENA; ISOLATION AND PURIFICATION; MICROBIOLOGY; PROTEOBACTERIA; UNITED STATES;

ARCHAEA; BACTERIA; CARBON SEQUESTRATION; GEOLOGICAL PROCESSES; PROTEOBACTERIA; SILICATES; WASHINGTON; WATER; WATER MICROBIOLOGY;

COLUMBIA RIVER; UNITED STATES; WASHINGTON [UNITED STATES];

ACTINOBACTERIA; ARCHAEA; BACTERIA (MICROORGANISMS); FIRMICUTES; HYDROGENOPHAGA; METHYLOMONAS; METHYLOTENERA; PROTEOBACTERIA; THIOVIRGA;

EID: 84879411301     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/1574-6941.12098     Document Type: Article

References (44)

1. Amann RI, Binder BJ, Olson RJ, Chisholm SW, Devereux R & Stahl DA (1990) Combination of 16s rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl Environ Microbiol 56: 1919-1925.
2. 2 geological storage: integrating geochemical, hydrodynamical, mechanical and biological processes from the pore to the reservoir scale. Chem Geol 265: 1-2.
3. Bickle MJ (2009) Geological carbon storage. Nat Geosci 2: 815-818.
4. Briggs BR, Inagaki F, Morono Y, Futagami T, Huguet C, Rosell-Mele A, Lorenson TD & Colwell FS (2012) Bacterial dominance in subseafloor sediments characterized by methane hydrates. FEMS Microbiol Ecol 81: 88-98.
5. Caporaso JG, Kuczynski J, Stombaugh J et al. (2010) Qiime allows analysis of high-throughput community sequencing data. Nat Methods 7: 335-336.
6. DeLong EF (1992) Archaea in coastal marine environments. PNAS 89: 5685-5689.
7. D'Hondt S, Jorgensen BB, Miller DJ et al. (2004) Distributions of microbial activities in deep subseafloor sediments. Science 306: 2216-2221.
8. Erwin DP, Erickson IK, Delwiche ME, Colwell FS, Strap JL & Crawford RL (2005) Diversity of oxygenase genes from methane- and ammonia-oxidizing bacteria in the eastern Snake River Plain Aquifer. Appl Environ Microbiol 71: 2016-2025.
9. Fredrickson JK & Balkwill DL (2006) Geomicrobial processes and biodiversity in the deep terrestrial subsurface. Geomicrobiol J 23: 345-356.
10. Fry N, Fredrickson J, Fishbain S, Wagner M & Stahl D (1997) Population structure of microbial communities associated with two deep, anaerobic, alkaline aquifers. Appl Environ Microbiol 63: 1498-1504.
11. German CR, Bowen A, Coleman ML et al. (2010) Diverse styles of submarine venting on the ultraslow spreading Mid-Cayman Rise. PNAS 107: 14020-14025.
12. Goldberg DS, Takahashi T & Slagle AL (2008) Carbon dioxide sequestration in deep-sea basalt. PNAS 105: 9920-9925.
13. 2 gradient affects on deep subsurface microbial ecology during carbon sequestration. AGU Fall Meeting Abstracts 1: 0553.
14. Gunter WD, Bachu S & Benson S (2004) The Role of Hydrogeological and Geochemical Trapping in Sedimentary Basins for Secure Geological Storage of Carbon Dioxide. Geological Society, London, Special Publications 233:129-145.
15. Hallbeck L & Pedersen K (2008) Characterization of microbial processes in deep aquifers of the Fennoscandian Shield. Appl Geochem 23: 1796-1819.
16. Hirsch P, Eckhardt FEW & Palmer RJ Jr (1995) Methods for the study of rock-inhabiting microorganisms - a mini review. J Microbiol Meth 23: 143-167.
17. Hou Y, Zhang H, Miranda L & Lin S (2010) Serious overestimation in quantitative PCR by circular (supercoiled) plasmid standard: microalgal pcna as the model gene. PLoS ONE 5: e9545.
18. Lehman RM, O'Connell SP, Banta A, Fredrickson JK, Reysenbach A-L, Kieft TL & Colwell FS (2004) Microbiological comparison of core and groundwater samples collected from a fractured basalt aquifer with that of dialysis chambers incubated in situ. Geomicrobiol J 21: 169-182.
19. Lin L-H, Wang P-L, Rumble D et al. (2006) Long-term sustainability of a high-energy, low-diversity crustal biome. Science 314: 479-482.
20. Lozupone C & Knight R (2005) Unifrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71: 8228-8235.
21. MacLean LCW, Pray TJ, Onstott TC, Brodie EL, Hazen TC & Southam G (2007) Mineralogical, chemical and biological characterization of an anaerobic biofilm collected from a borehole in a deep gold mine in South Africa. Geomicrobiol J 24: 491-504.
22. Mason OU, Di Meo-Savoie CA, Van Nostrand JD, Zhou J, Fisk MR & Giovannoni SJ (2008) Prokaryotic diversity, distribution, and insights into their role in biogeochemical cycling in marine basalts. ISME J 3: 231-242.
23. 2 sequestration. Geochem Geophy Geosy 8: Q02001, doi: 10.1029/2006GC001427.
24. McGrail P, Schaef T, Ho A, Chien Y-J, Dooley J & Davidson C (2006) Potential for carbon dioxide sequestratioin in flood basalts. J Geophys Res 111: doi: 10.1029/2005JB004169.
25. McGrail B, Sullivan E, Spane F, Bacon DH, Hund G, Thorne PD, Thompson CJ, Reidel SP & Colwell FS (2009) Preliminary Hydrogeologic Characterization Results from the Wallula Basalt Pilot Study. Battelle, Pacifc Northwest Division, Richland, WA.
26. 2 storage by fluorescence in situ hybridisation. IJGGC 4: 981-989.
27. Newby DT, Reed DW, Petzke LM, Igoe AL, Delwiche ME, Roberto FF, McKinley JP, Whiticar MJ & Colwell FS (2004) Diversity of methanotroph communities in a basalt aquifer. FEMS Microbiol Ecol 48: 333-344.
28. O'Connell SP, Lehman RM, Snoeyenbos-West O, Winston VD, Cummings DE, Watwood ME & Colwell FS (2003) Detection of Euryarchaeota and Crenarchaeota in an oxic basalt aquifer. FEMS Microbiol Ecol 44: 165-173.
29. 2 Capture and Storage Project 2: 1207-1239.
30. Onstott TC, Phelps TJ, Kieft T, Colwell FS, Balkwill DL, Fredrickson JK & Brockman FJ (1999) A global perspective on the microbial abundance and activity in the deep subsurface. Enigmatic Microorganisms and Life in Extreme Environments (Seckbach J, ed), pp. 489-500. Kluwer Academic, Dordrechet.
31. 2. Science 325: 1656-1658.
32. Pacala S & Socolow S (2004) Stabilization wedges: solving the climate problem for the next 50 years with current technologies. Science 305: 968-972.
33. Parkes RJ, Cragg BA, Bale SJ, Getlifff JM, Goodman K, Rochelle PA, Fry JC, Weightman AJ & Harvey SM (1994) Deep bacterial biosphere in Pacific Ocean sediments. Nature 371: 410-413.
34. Parkes RJ, Webster G, Cragg BA, Weightman AJ, Newberry CJ, Ferdelman TG, Kallmeyer J, Jorgensen BB, Aiello IW & Fry JC (2005) Deep sub-seafloor prokaryotes stimulated at interfaces over geological time. Nature 436: 390-394.
35. Pedersen K (1999) Evidence for a hydrogen-driven, intra-terrestrial biosphere in deep granitic rock aquifers. Proceedings of the 8th International Symposium on Microbial Ecology (Bell CR, Brylinsky M & Johnson-Green P, eds), Atlantic Canada Society for Microbial Ecology, Halifax, Canada.
36. Rastogi G, Stetler L, Peyton B & Sani R (2009) Molecular analysis of prokaryotic diversity in the deep subsurface of the former homestake gold mine, South Dakota, USA. J Microbiol 47: 371-384.
37. Schaef T & McGrail P (2009) Dissolution of Columbia River basalt under mildly acidic conditions as a function of temperature: experimental results relevant to the geological sequestration of carbon dioxide. Appl Geochem 24: 980-987.
38. Sinclair JL & Ghiorse WC (1989) Distribution of aerobic bacteria, protozoa, algae, and fungi in deep subsurface sediments. Geomicrobiol J 7: 15-31.
39. Stevens TO & McKinley JP (1995) Lithoautotrophic microbial ecosystems in deep basalt aquifers. Science 270: 450-455.
40. Stevens TO, McKinley JP & Fredrickson J (1993) Bacteria associated with deep, alkaline, anaerobic groundwaters in southeast Washington. Microbial Ecol 25: 35-50.
41. Torsvik V, Øvreås L & Thingstad TF (2002) Prokaryotic diversity-magnitude, dynamics, and controlling factors. Science 296: 1064-1066.
42. Vreeland RH, Rosenzweig WD & Powers DW (2000) Isolation of a 250 million-year-old halotolerant bacterium from a primary salt crystal. Nature 407: 897-900.
43. 2 sink-long-term experiments under in situ conditions. Energy Procedia 4: 3651-3657.
44. Zhang T & Fang H (2006) Applications of real-time polymerase chain reaction for quantification of microorganisms in environmental samples. Appl Microbiol Biot 70: 281-289.