-
1
-
-
77957164874
-
Predicted bacteriorhodopsin from Exigu-obacterium sibiricum is a functional proton pump
-
Petrovskaya, L. E., Lukashev, E. P., Chupin, V. V., Sychev, S. V., Lyuk-manova, E. N., Kryukova, E. A., Ziganshin, R. H., Spirina, E. V., Rivkina, E. M., Khatypov, R. A., Erokhina, L. G., Gilichinsky, D. A., Shuvalov, V. A., and Kirpichnikov, M. P. (2010) Predicted bacteriorhodopsin from Exigu-obacterium sibiricum is a functional proton pump. FEBS Lett. 584, 4193-4196
-
(2010)
FEBS Lett.
, vol.584
, pp. 4193-4196
-
-
Petrovskaya, L.E.1
Lukashev, E.P.2
Chupin, V.V.3
Sychev, S.V.4
Lyuk-Manova, E.N.5
Kryukova, E.A.6
Ziganshin, R.H.7
Spirina, E.V.8
Rivkina, E.M.9
Khatypov, R.A.10
Erokhina, L.G.11
Gilichinsky, D.A.12
Shuvalov, V.A.13
Kirpichnikov, M.P.14
-
2
-
-
84864205121
-
Aspartate-histidine interaction in the retinal Schiff base counterion of the light-driven proton pump of Exiguobacterium sibiricum
-
Balashov, S. P., Petrovskaya, L. E., Lukashev, E. P., Imasheva, E. S., Di-oumaev, A. K., Wang, J. M., Sychev, S. V., Dolgikh, D. A., Rubin, A. B., Kirpichnikov, M. P., and Lanyi, J. K. (2012) Aspartate-histidine interaction in the retinal Schiff base counterion of the light-driven proton pump of Exiguobacterium sibiricum. Biochemistry 51, 5748 -5762
-
(2012)
Biochemistry
, vol.51
, pp. 5748-5762
-
-
Balashov, S.P.1
Petrovskaya, L.E.2
Lukashev, E.P.3
Imasheva, E.S.4
Di-Oumaev, A.K.5
Wang, J.M.6
Sychev, S.V.7
Dolgikh, D.A.8
Rubin, A.B.9
Kirpichnikov, M.P.10
Lanyi, J.K.11
-
3
-
-
0034202217
-
Low-temperature recovery strategies for the isolation of bacteria from ancient permafrost sediments
-
Vishnivetskaya, T., Kathariou, S., McGrath, J., Gilichinsky, D., and Tiedje, J. M. (2000) Low-temperature recovery strategies for the isolation of bacteria from ancient permafrost sediments. Extremophiles 4,165-173
-
(2000)
Extremophiles
, vol.4
, pp. 165-173
-
-
Vishnivetskaya, T.1
Kathariou, S.2
McGrath, J.3
Gilichinsky, D.4
Tiedje, J.M.5
-
4
-
-
33748299372
-
Characterization of Exiguobacte-rium isolates from the Siberian permafrost
-
Rodrigues, D. F., Goris, J., Vishnivetskaya, T., Gilichinsky, D., Thom-ashow, M. F., and Tiedje, J. M. (2006) Characterization of Exiguobacte-rium isolates from the Siberian permafrost. Description of Exiguobacte-rium sibiricum sp. nov. Extremophiles 10, 285-294
-
(2006)
Description of Exiguobacte-rium Sibiricum Sp. Nov. Extremophiles
, vol.10
, pp. 285-294
-
-
Rodrigues, D.F.1
Goris, J.2
Vishnivetskaya, T.3
Gilichinsky, D.4
Thom-Ashow, M.F.5
Tiedje, J.M.6
-
6
-
-
0018385465
-
The structural basis of the functioning of bacteri-orhodopsin: An overview
-
Ovchinnikov, Y. A., Abdulaev, N. G., Feigina, M. Y., Kiselev, A. V., and Lobanov, N. A. (1979) The structural basis of the functioning of bacteri-orhodopsin: An overview. FEBS Lett. 100, 219-224
-
(1979)
FEBS Lett.
, vol.100
, pp. 219-224
-
-
Ovchinnikov, Y.A.1
Abdulaev, N.G.2
Feigina, M.Y.3
Kiselev, A.V.4
Lobanov, N.A.5
-
7
-
-
0000602044
-
Amino acid sequence of bacteriorho-dopsin
-
Khorana, H. G., Gerber, G. E., Herlihy, W. C., Gray, C. P., Anderegg, R. J., Nihei, K., and Biemann, K. (1979) Amino acid sequence of bacteriorho-dopsin. Proc. Natl. Acad. Sci. U.S.A. 76, 5046-5050
-
(1979)
Proc. Natl. Acad. Sci. U.S.A.
, vol.76
, pp. 5046-5050
-
-
Khorana, H.G.1
Gerber, G.E.2
Herlihy, W.C.3
Gray, C.P.4
Anderegg, R.J.5
Nihei, K.6
Biemann, K.7
-
8
-
-
0034665853
-
Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea
-
Béjá, O., Aravind, L., Koonin, E. V., Suzuki, M. T., Hadd, A., Nguyen, L. P., Jovanovich, S. B., Gates, C. M., Feldman, R. A., Spudich, J. L., Spudich, E. N., and DeLong, E. F. (2000) Bacterial rhodopsin: Evidence for a new type of phototrophy in the sea. Science 289,1902-1906
-
(2000)
Science
, vol.289
, pp. 1902-1906
-
-
Béjá, O.1
Aravind, L.2
Koonin, E.V.3
Suzuki, M.T.4
Hadd, A.5
Nguyen, L.P.6
Jovanovich, S.B.7
Gates, C.M.8
Feldman, R.A.9
Spudich, J.L.10
Spudich, E.N.11
Delong, E.F.12
-
9
-
-
25444463058
-
Xanthorhodopsin: A proton pump with a light-harvesting carotenoid antenna
-
Balashov, S. P., Imasheva, E. S., Boichenko, V. A., Antón, J., Wang, J. M., and Lanyi, J. K. (2005) Xanthorhodopsin: A proton pump with a light-harvesting carotenoid antenna. Science 309, 2061-2064
-
(2005)
Science
, vol.309
, pp. 2061-2064
-
-
Balashov, S.P.1
Imasheva, E.S.2
Boichenko, V.A.3
Antón, J.4
Wang, J.M.5
Lanyi, J.K.6
-
10
-
-
29144485325
-
The genome of Salinibacter ruber: Convergence and gene exchange among hyper-halophilic bacteria and archaea
-
Mongodin, E. F., Nelson, K. E., Daugherty, S., Deboy, R. T., Wister, J., Khouri, H., Weidman, J., Walsh, D. A., Papke, R. T., Sanchez Perez, G., Sharma, A. K., Nesb, C. L., MacLeod, D., Bapteste, E., Doolittle, W. F., Charlebois, R. L., Legault, B., and Rodriguez-Valera, F. (2005) The genome of Salinibacter ruber: Convergence and gene exchange among hyper-halophilic bacteria and archaea. Proc. Natl. Acad. Sci. U.S.A. 102, 18147-18152
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 18147-18152
-
-
Mongodin, E.F.1
Nelson, K.E.2
Daugherty, S.3
Deboy, R.T.4
Wister, J.5
Khouri, H.6
Weidman, J.7
Walsh, D.A.8
Papke, R.T.9
Sanchez Perez, G.10
Sharma, A.K.11
Nesb, C.L.12
Macleod, D.13
Bapteste, E.14
Doolittle, W.F.15
Charlebois, R.L.16
Legault, B.17
Rodriguez-Valera, F.18
-
11
-
-
72749109806
-
Reconstitution of Gloeobacter violaceus rhodopsin with a light-harvesting carotenoid antenna
-
Imasheva, E. S., Balashov, S. P., Choi, A. R., Jung, K.-H., and Lanyi, J. K. (2009) Reconstitution of Gloeobacter violaceus rhodopsin with a light-harvesting carotenoid antenna. Biochemistry 48,10948-10955
-
(2009)
Biochemistry
, vol.48
, pp. 10948-10955
-
-
Imasheva, E.S.1
Balashov, S.P.2
Choi, A.R.3
Jung, K.-H.4
Lanyi, J.K.5
-
12
-
-
0027043105
-
Aspartic acid 85 in bacteriorhodopsin functions both as proton acceptor and negative counterion to the Schiff base
-
Subramaniam, S., Greenhalgh, D. A., and Khorana, H. G. (1992) Aspartic acid 85 in bacteriorhodopsin functions both as proton acceptor and negative counterion to the Schiff base. J. Biol. Chem. 267, 25730 -25733
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 25730-25733
-
-
Subramaniam, S.1
Greenhalgh, D.A.2
Khorana, H.G.3
-
13
-
-
55949126022
-
Crystallographic structure of xanthorhodop-sin, the light-driven proton pump with a dual chromophore
-
Luecke, H., Schobert, B., Stagno, J., Imasheva, E. S., Wang, J. M., Balashov, S. P., and Lanyi, J. K. (2008) Crystallographic structure of xanthorhodop-sin, the light-driven proton pump with a dual chromophore. Proc. Natl. Acad. Sci. U.S.A. 105, 16561-16565
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 16561-16565
-
-
Luecke, H.1
Schobert, B.2
Stagno, J.3
Imasheva, E.S.4
Wang, J.M.5
Balashov, S.P.6
Lanyi, J.K.7
-
14
-
-
35848943488
-
Mechanism of spectral tuning in green-absorbing proteorhodopsin
-
Rangarajan, R., Galan, J.F., Whited, G., and Birge, R. R. (2007) Mechanism of spectral tuning in green-absorbing proteorhodopsin. Biochemistry 46, 12679-12686
-
(2007)
Biochemistry
, vol.46
, pp. 12679-12686
-
-
Rangarajan, R.1
Galan, J.F.2
Whited, G.3
Birge, R.R.4
-
15
-
-
59149088134
-
His-75 in proteorhodopsin, a novel component in light-driven proton translocation by primary pumps
-
Bergo, V. B., Sineshchekov, O. A., Kralj, J. M., Partha, R., Spudich, E. N., Rothschild, K. J., and Spudich, J. L. (2009) His-75 in proteorhodopsin, a novel component in light-driven proton translocation by primary pumps. J.Biol. Chem. 284, 2836 -2843
-
(2009)
J.Biol. Chem.
, vol.284
, pp. 2836-2843
-
-
Bergo, V.B.1
Sineshchekov, O.A.2
Kralj, J.M.3
Partha, R.4
Spudich, E.N.5
Rothschild, K.J.6
Spudich, J.L.7
-
16
-
-
0024289369
-
Vibrational spectroscopy of bacteriorhodopsin mutants: Light-driven proton transport involves protonation changes of as-partic acid residues 85, 96, and 212
-
Braiman, M. S., Mogi, T., Marti, T., Stern, L. J., Khorana, H. G., and Rothschild, K. J. (1988) Vibrational spectroscopy of bacteriorhodopsin mutants: Light-driven proton transport involves protonation changes of as-partic acid residues 85, 96, and 212. Biochemistry 27, 8516-8520
-
(1988)
Biochemistry
, vol.27
, pp. 8516-8520
-
-
Braiman, M.S.1
Mogi, T.2
Marti, T.3
Stern, L.J.4
Khorana, H.G.5
Rothschild, K.J.6
-
17
-
-
0024317089
-
Aspartic acid-96 is the internal proton donor in the reprotonaion ofthe Schiffbase ofbacteriorhodopsin
-
Otto, H., Marti, T., Holz, M., Mogi, T., Lindau, M., Khorana, H. G., and Heyn, M. P. (1989) Aspartic acid-96 is the internal proton donor in the reprotonaion ofthe Schiffbase ofbacteriorhodopsin. Proc. Natl. Acad. Sci. U.S.A. 86, 9228 -9232
-
(1989)
Proc. Natl. Acad. Sci. U.S.A.
, vol.86
, pp. 9228-9232
-
-
Otto, H.1
Marti, T.2
Holz, M.3
Mogi, T.4
Lindau, M.5
Khorana, H.G.6
Heyn, M.P.7
-
18
-
-
0024707259
-
Role of aspar-tate-96 in proton translocation by bacteriorhodopsin
-
Gerwert, K., Hess, B., Soppa, J., and Oesterhelt, D. (1989) Role of aspar-tate-96 in proton translocation by bacteriorhodopsin. Proc. Natl. Acad. Sci. U.S.A. 86, 4943-4947
-
(1989)
Proc. Natl. Acad. Sci. U.S.A.
, vol.86
, pp. 4943-4947
-
-
Gerwert, K.1
Hess, B.2
Soppa, J.3
Oesterhelt, D.4
-
19
-
-
0025011266
-
Kinetic optimization of bacteriorho-dopsin by aspartic acid 96 as an internal proton donor
-
Miller, A., and Oesterhelt, D. (1990) Kinetic optimization of bacteriorho-dopsin by aspartic acid 96 as an internal proton donor. Biochim. Biophys. Acta 1020, 57- 64
-
(1990)
Biochim. Biophys. Acta
, vol.1020
, pp. 57-64
-
-
Miller, A.1
Oesterhelt, D.2
-
20
-
-
0027394224
-
Two light-transducing membrane proteins: Bacte-riorhodopsin and the mammalian rhodopsin
-
Khorana, H. G. (1993) Two light-transducing membrane proteins: Bacte-riorhodopsin and the mammalian rhodopsin. Proc. Natl. Acad. Sci. U.S.A. 90, 1166 -1171
-
(1993)
Proc. Natl. Acad. Sci. U.S.A.
, vol.90
, pp. 1166-1171
-
-
Khorana, H.G.1
-
21
-
-
0037197668
-
Proton transfers in the photochemical reaction cycle of proteorhodopsin
-
Dioumaev, A. K., Brown, L. S., Shih, J., Spudich, E. N., Spudich, J. L., and Lanyi, J. K. (2002) Proton transfers in the photochemical reaction cycle of proteorhodopsin. Biochemistry 41, 5348 -5358
-
(2002)
Biochemistry
, vol.41
, pp. 5348-5358
-
-
Dioumaev, A.K.1
Brown, L.S.2
Shih, J.3
Spudich, E.N.4
Spudich, J.L.5
Lanyi, J.K.6
-
22
-
-
84856659328
-
Untangling genomes from metagenomes: Revealing an uncultured class of marine Euryarchaeota
-
Iverson, V., Morris, R. M., Frazar, C. D., Berthiaume, C. T., Morales, R. L., and Armbrust, E. V. (2012) Untangling genomes from metagenomes: Revealing an uncultured class of marine Euryarchaeota. Science 335, 587-590
-
(2012)
Science
, vol.335
, pp. 587-590
-
-
Iverson, V.1
Morris, R.M.2
Frazar, C.D.3
Berthiaume, C.T.4
Morales, R.L.5
Armbrust, E.V.6
-
23
-
-
62649112114
-
The photocycle and proton translocation pathway in a cyanobacterial ion-pumping rhodopsin
-
Miranda, M. R., Choi, A. R., Shi, L., Bezerra, A. G., Jr., Jung, K.-H., and Brown, L. S. (2009) The photocycle and proton translocation pathway in a cyanobacterial ion-pumping rhodopsin. Biophys. J. 96,1471-1481
-
(2009)
Biophys. J.
, vol.96
, pp. 1471-1481
-
-
Miranda, M.R.1
Choi, A.R.2
Shi, L.3
Bezerra Jr., A.G.4
Jung, K.-H.5
Brown, L.S.6
-
24
-
-
0039545992
-
Tunable laser resonance Raman spectroscopy of bacteri-orhodopsin
-
Lewis, A., Spoonhower, J., Bogomolni, R. A., Lozier, R. H., and Stoecken-ius, W. (1974) Tunable laser resonance Raman spectroscopy of bacteri-orhodopsin. Proc. Natl. Acad. Sci. U.S.A. 71, 4462-4466
-
(1974)
Proc. Natl. Acad. Sci. U.S.A.
, vol.71
, pp. 4462-4466
-
-
Lewis, A.1
Spoonhower, J.2
Bogomolni, R.A.3
Lozier, R.H.4
Stoecken-Ius, W.5
-
25
-
-
84989674532
-
Identification of the proton acceptor of Schiff base de-protonation in bacteriorhodopsin: A Fourier-transform-infrared study of the mutant Asp-85 3 Glu in its natural lipid environment
-
Fahmy, K., Weidlich, O., Engelhard, M., Tittor, J., Oesterhelt, D., and Siebert, F. (1992) Identification of the proton acceptor of Schiff base de-protonation in bacteriorhodopsin: a Fourier-transform-infrared study of the mutant Asp-85 3 Glu in its natural lipid environment. Photochem. Photobiol. 56,1073-1083
-
(1992)
Photochem. Photobiol.
, vol.56
, pp. 1073-1083
-
-
Fahmy, K.1
Weidlich, O.2
Engelhard, M.3
Tittor, J.4
Oesterhelt, D.5
Siebert, F.6
-
26
-
-
0017172006
-
Kinetics and stoichiometry of light-induced proton release and uptake from purple membrane fragments, Halobacterium halo-bium cell envelopes, and phospholipid vesicles containing oriented purple membrane
-
Lozier, R. H., Niederberger, W., Bogomolni, R. A., Hwang, S., and Stoeck-enius, W. (1976) Kinetics and stoichiometry of light-induced proton release and uptake from purple membrane fragments, Halobacterium halo-bium cell envelopes, and phospholipid vesicles containing oriented purple membrane. Biochim. Biophys. Acta 440, 545-556
-
(1976)
Biochim. Biophys. Acta
, vol.440
, pp. 545-556
-
-
Lozier, R.H.1
Niederberger, W.2
Bogomolni, R.A.3
Hwang, S.4
Stoeck-Enius, W.5
-
27
-
-
0025764569
-
Vibrational spectroscopy of bacteriorhodopsin mutants. Evidence that Asp-96 deprotonates during the M 3 N transition
-
Bousche, O., Braiman, M., He, Y.-W., Marti, T., Khorana, H. G., and Rothschild, K. J. (1991) Vibrational spectroscopy of bacteriorhodopsin mutants. Evidence that Asp-96 deprotonates during the M 3 N transition. J. Biol. Chem. 266,11063-11067
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 11063-11067
-
-
Bousche, O.1
Braiman, M.2
He, Y.-W.3
Marti, T.4
Khorana, H.G.5
Rothschild, K.J.6
-
28
-
-
0033545872
-
In situ determination of transient pKa changes of internal amino acids of bacteriorhodopsin by using time-resolved attenuated total reflection Fourier-transform infrared spectroscopy
-
Zscherp, C., Schlesinger, R., Tittor, J., Oesterhelt, D., and Heberle, J. (1999) In situ determination of transient pKa changes of internal amino acids of bacteriorhodopsin by using time-resolved attenuated total reflection Fourier-transform infrared spectroscopy. Proc. Natl. Acad. Sci. U.S.A. 96, 5498-5503
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 5498-5503
-
-
Zscherp, C.1
Schlesinger, R.2
Tittor, J.3
Oesterhelt, D.4
Heberle, J.5
-
29
-
-
0033573864
-
The proton release group of bacteriorhodopsin controls the rate of the final step of its photocycle at low pH
-
Balashov, S. P., Lu, M., Imasheva, E. S., Govindjee, R., Ebrey, T. G., Oth-ersen, B., 3rd, Chen, Y., Crouch, R. K., and Menick, D. R. (1999) The proton release group of bacteriorhodopsin controls the rate of the final step of its photocycle at low pH. Biochemistry 38, 2026-2039
-
(1999)
Biochemistry
, vol.38
, pp. 2026-2039
-
-
Balashov, S.P.1
Lu, M.2
Imasheva, E.S.3
Govindjee, R.4
Ebrey, T.G.5
Oth-Ersen, B.6
Chen Iii, Y.7
Crouch, R.K.8
Menick, D.R.9
-
30
-
-
0025299602
-
The role of back-reactions and proton uptake during the N →o transition in bacteriorhodopsin's photocycle: A kinetic resonance Raman study
-
Ames, J. B., and Mathies, R. A. (1990) The role of back-reactions and proton uptake during the N →O transition in bacteriorhodopsin's photocycle: A kinetic resonance Raman study. Biochemistry 29, 7181-7190
-
(1990)
Biochemistry
, vol.29
, pp. 7181-7190
-
-
Ames, J.B.1
Mathies, R.A.2
-
31
-
-
0027386107
-
Relationship of proton uptake on the cytoplasmic surface and reisomerization of the retinal in the bacteriorhodopsin photocycle: An attempt to understand the complex kinetics of the protons and the N and O intermediates
-
Cao, Y., Brown, L. S., Needleman, R., and Lanyi, J. K. (1993) Relationship of proton uptake on the cytoplasmic surface and reisomerization of the retinal in the bacteriorhodopsin photocycle: An attempt to understand the complex kinetics of the protons and the N and O intermediates. Biochem-istry32, 10239 -10248
-
(1993)
Biochem-istry
, vol.32
, pp. 10239-10248
-
-
Cao, Y.1
Brown, L.S.2
Needleman, R.3
Lanyi, J.K.4
-
32
-
-
0027457063
-
Proton transfer from Asp-96 to the bacteriorhodopsin Schiff base is caused by a decrease of the pKa of Asp-96 which follows a protein backbone conformational change
-
Cao, Y., Värö, G., Klinger, A. L., Czajkowsky, D. M., Braiman, M. S., Needleman, R., and Lanyi, J. K. (1993) Proton transfer from Asp-96 to the bacteriorhodopsin Schiff base is caused by a decrease of the pKa of Asp-96 which follows a protein backbone conformational change. Biochemistry 32, 1981-1990
-
(1993)
Biochemistry
, vol.32
, pp. 1981-1990
-
-
Cao, Y.1
Värö, G.2
Klinger, A.L.3
Czajkowsky, D.M.4
Braiman, M.S.5
Needleman, R.6
Lanyi, J.K.7
-
33
-
-
0034734260
-
Protonation reactions and their coupling in bacte-riorhodopsin
-
Balashov, S. P. (2000) Protonation reactions and their coupling in bacte-riorhodopsin. Biochim. Biophys. Acta 1460, 75-94
-
(2000)
Biochim. Biophys. Acta
, vol.1460
, pp. 75-94
-
-
Balashov, S.P.1
-
34
-
-
0024651574
-
Replacement of aspartic ac-id-96 by asparagine in bacteriorhodopsin slows both the decay of the M intermediate and the associated proton movement
-
Holz, M., Drachev, L. A., Mogi, T., Otto, H., Kaulen, A. D., Heyn, M. P., Skulachev, V. P., and Khorana, H. G. (1989) Replacement of aspartic ac-id-96 by asparagine in bacteriorhodopsin slows both the decay of the M intermediate and the associated proton movement. Proc. Natl. Acad. Sci. U.S.A. 86, 2167-2171
-
(1989)
Proc. Natl. Acad. Sci. U.S.A.
, vol.86
, pp. 2167-2171
-
-
Holz, M.1
Drachev, L.A.2
Mogi, T.3
Otto, H.4
Kaulen, A.D.5
Heyn, M.P.6
Skulachev, V.P.7
Khorana, H.G.8
-
35
-
-
0000948647
-
The photocycle of the chloride pump halorhodopsin. 1. Azide-catalyzed deprotonation of the chromophore is a side reaction of photocycle intermediates inactivating the pump
-
Hegemann, P., Oesterbelt, D., and Steiner, M. (1985) The photocycle of the chloride pump halorhodopsin. 1. Azide-catalyzed deprotonation of the chromophore is a side reaction of photocycle intermediates inactivating the pump. EMBO J. 4, 2347-2350
-
(1985)
EMBO J
, vol.4
, pp. 2347-2350
-
-
Hegemann, P.1
Oesterbelt, D.2
Steiner, M.3
-
36
-
-
0024325044
-
A defective proton pump, point-mutated bacteriorhodopsin Asp-96 → Asn is fully reactivated by azide
-
Tittor, J., Soell, C., Oesterhelt, D., Butt, H. J., and Bamberg, E. (1989) A defective proton pump, point-mutated bacteriorhodopsin Asp-96 → Asn is fully reactivated by azide. EMBO J. 8, 3477-3482
-
(1989)
EMBO J
, vol.8
, pp. 3477-3482
-
-
Tittor, J.1
Soell, C.2
Oesterhelt, D.3
Butt, H.J.4
Bamberg, E.5
-
37
-
-
0029864761
-
Determination of the transiently lowered pKa of the retinal Schiff base during the photocycle of bacteriorho-dopsin
-
Brown, L. S., and Lanyi, J. K. (1996) Determination of the transiently lowered pKa of the retinal Schiff base during the photocycle of bacteriorho-dopsin. Proc. Natl. Acad. Sci. U.S.A. 93, 1731-1734
-
(1996)
Proc. Natl. Acad. Sci. U.S.A.
, vol.93
, pp. 1731-1734
-
-
Brown, L.S.1
Lanyi, J.K.2
-
38
-
-
0030728340
-
Evaluation of intrinsic chemical kinetics and transient product spectra from time-resolved spectroscopic data
-
Dioumaev, A. K. (1997) Evaluation of intrinsic chemical kinetics and transient product spectra from time-resolved spectroscopic data. Biophys. Chem. 67,1-25
-
(1997)
Biophys. Chem.
, vol.67
, pp. 1-25
-
-
Dioumaev, A.K.1
-
39
-
-
0026725522
-
Surface-bound optical probes monitor proton translocation and surface potential changes during the bacte-riorhodopsin photocycle
-
Heberle, J., and Dencher, N. A. (1992) Surface-bound optical probes monitor proton translocation and surface potential changes during the bacte-riorhodopsin photocycle. Proc. Natl. Acad. Sci. U.S.A. 89, 5996 - 6000
-
(1992)
Proc. Natl. Acad. Sci. U.S.A.
, vol.89
, pp. 5996-6000
-
-
Heberle, J.1
Dencher, N.A.2
-
40
-
-
0028864699
-
Glutamic acid 204 is the terminal proton release group at the extracellular surface of bacteriorhodopsin
-
Brown, L. S., Sasaki, J., Kandori, H., Maeda, A., Needleman, R., and Lanyi, J. K. (1995) Glutamic acid 204 is the terminal proton release group at the extracellular surface of bacteriorhodopsin. J. Biol. Chem. 270, 27122-27126
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 27122-27126
-
-
Brown, L.S.1
Sasaki, J.2
Kandori, H.3
Maeda, A.4
Needleman, R.5
Lanyi, J.K.6
-
41
-
-
0030929840
-
Proton uptake and release are rate-limiting steps in the photocycle of the bacteriorhodopsin mutant E204Q
-
Misra, S., Govindjee, R., Ebrey, T. G., Chen, N., Ma, J.-X., and Crouch, R. K. (1997) Proton uptake and release are rate-limiting steps in the photocycle of the bacteriorhodopsin mutant E204Q. Biochemistry 36, 4875-4883
-
(1997)
Biochemistry
, vol.36
, pp. 4875-4883
-
-
Misra, S.1
Govindjee, R.2
Ebrey, T.G.3
Chen, N.4
Ma, J.-X.5
Crouch, R.K.6
-
42
-
-
0030808219
-
Glutamate-194 to cysteine mutation inhibits fast light-induced proton release in bacteriorhodopsin
-
Balashov, S. P., Imasheva, E. S., Ebrey, T. G., Chen, N., Menick, D. R., and Crouch, R. K. (1997) Glutamate-194 to cysteine mutation inhibits fast light-induced proton release in bacteriorhodopsin. Biochemistry 36, 8671-8676
-
(1997)
Biochemistry
, vol.36
, pp. 8671-8676
-
-
Balashov, S.P.1
Imasheva, E.S.2
Ebrey, T.G.3
Chen, N.4
Menick, D.R.5
Crouch, R.K.6
-
43
-
-
0032562215
-
Existence of a proton transfer chain in bacteriorhodopsin: Participation of Glu-194 in the release of protons to the extracellular surface
-
Dioumaev, A. K., Richter, H.-T., Brown, L. S., Tanio, M., Tuzi, S., Saito, H., Kimura, Y., Needleman, R., and Lanyi, J. K. (1998) Existence of a proton transfer chain in bacteriorhodopsin: Participation of Glu-194 in the release of protons to the extracellular surface. Biochemistry 37, 2496 -2506
-
(1998)
Biochemistry
, vol.37
, pp. 2496-2506
-
-
Dioumaev, A.K.1
Richter, H.-T.2
Brown, L.S.3
Tanio, M.4
Tuzi, S.5
Saito, H.6
Kimura, Y.7
Needleman, R.8
Lanyi, J.K.9
-
44
-
-
0034620606
-
Origins of deuterium isotope effects on the proton transfers of the bacteriorhodopsin photocycle
-
Brown, L. S., Needleman, R., and Lanyi, J. K. (2000) Origins of deuterium isotope effects on the proton transfers of the bacteriorhodopsin photocycle. Biochemistry 39, 938 -945
-
(2000)
Biochemistry
, vol.39
, pp. 938-945
-
-
Brown, L.S.1
Needleman, R.2
Lanyi, J.K.3
-
45
-
-
14844347271
-
Proton binding within a membrane protein by a protonated water cluster
-
Garczarek, F., Brown, L. S., Lanyi, J. K., and Gerwert, K. (2005) Proton binding within a membrane protein by a protonated water cluster. Proc. Natl. Acad. Sci. U.S.A. 102, 3633-3638
-
(2005)
Proc. Natl. Acad. Sci. U.S.A.
, vol.102
, pp. 3633-3638
-
-
Garczarek, F.1
Brown, L.S.2
Lanyi, J.K.3
Gerwert, K.4
-
46
-
-
0027261411
-
Pathway of proton uptake in the bacteriorhodopsin photocycle
-
Zimányi, L., Cao, Y., Needleman, R., Ottolenghi, M., and Lanyi, J. K. (1993) Pathway of proton uptake in the bacteriorhodopsin photocycle. Biochemistry 32, 7669 -7678
-
(1993)
Biochemistry
, vol.32
, pp. 7669-7678
-
-
Zimányi, L.1
Cao, Y.2
Needleman, R.3
Ottolenghi, M.4
Lanyi, J.K.5
-
47
-
-
0033609904
-
Structure of bacteriorhodopsin at 1.55 A resolution
-
Luecke, H., Schobert, B., Richter, H.-T., Cartailler, J.-P., and Lanyi, J. K. (1999) Structure of bacteriorhodopsin at 1.55 A resolution. J. Mol. Biol. 291, 899-911
-
(1999)
J. Mol. Biol.
, vol.291
, pp. 899-911
-
-
Luecke, H.1
Schobert, B.2
Richter, H.-T.3
Cartailler, J.-P.4
Lanyi, J.K.5
-
48
-
-
66249136708
-
The origin of the electrostatic perturbation in acetoacetate decarboxylase
-
Ho, M. C., Ménétret, J. F., Tsuruta, H., and Allen, K. N. (2009) The origin of the electrostatic perturbation in acetoacetate decarboxylase. Nature 459, 393-U107
-
(2009)
Nature
, vol.459
-
-
Ho, M.C.1
Ménétret, J.F.2
Tsuruta, H.3
Allen, K.N.4
-
49
-
-
79955092337
-
Large shifts in pKa values of lysine residues buried inside a protein
-
Isom, D. G., Castañeda, C. A., Cannon, B. R., and García-Moreno, B. (2011) Large shifts in pKa values of lysine residues buried inside a protein. Proc. Natl. Acad. Sci. U.S.A. 108, 5260-5265
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 5260-5265
-
-
Isom, D.G.1
Castañeda, C.A.2
Cannon, B.R.3
García-Moreno, B.4
-
50
-
-
43049126500
-
A buried lysine that titrates with a normal pKa: Role of conformational flexibility at the protein-water interface as a determinant of pKa values
-
Harms,M.J.,Schlessman,J.L.,Chimenti,M.S.,Sue,G.R.,DamjanoviC, A., and García-Moreno, B. (2008) A buried lysine that titrates with a normal pKa: Role of conformational flexibility at the protein-water interface as a determinant of pKa values. Protein Sci. 17, 833-845
-
(2008)
Protein Sci.
, vol.17
, pp. 833-845
-
-
Harms, M.J.1
Schlessman, J.L.2
Chimenti, M.S.3
Sue, G.R.4
Damjanovic, A.5
García-Moreno, B.6
-
51
-
-
0033536594
-
Structural changes in bacteriorhodopsin during ion transport at 2 Angstrom resolution
-
Luecke, H., Schobert, B., Richter, H.-T., Cartailler, J.-P., and Lanyi, J. K. (1999) Structural changes in bacteriorhodopsin during ion transport at 2 Angstrom resolution. Science 286, 255-261
-
(1999)
Science
, vol.286
, pp. 255-261
-
-
Luecke, H.1
Schobert, B.2
Richter, H.-T.3
Cartailler, J.-P.4
Lanyi, J.K.5
-
52
-
-
0038649076
-
Crystallographic structures of the M and N intermediates of bacteriorhodopsin: Assembly of a hydrogen-bonded chain of water molecules between Asp-96 and the retinal Schiff base
-
Schobert, B., Brown, L. S., and Lanyi, J. K. (2003) Crystallographic structures of the M and N intermediates of bacteriorhodopsin: Assembly of a hydrogen-bonded chain of water molecules between Asp-96 and the retinal Schiff base. J. Mol. Biol. 330, 553-570
-
(2003)
J. Mol. Biol.
, vol.330
, pp. 553-570
-
-
Schobert, B.1
Brown, L.S.2
Lanyi, J.K.3
-
53
-
-
0026332339
-
Water is required for proton transfer from aspartate 96 to the bacteriorhodopsin Schiff base
-
Cao, Y., Váró, G., Chang, M., Ni, B. F., Needleman, R., and Lanyi, J. K. (1991) Water is required for proton transfer from aspartate 96 to the bacteriorhodopsin Schiff base. Biochemistry 30, 10972-10979
-
(1991)
Biochemistry
, vol.30
, pp. 10972-10979
-
-
Cao, Y.1
Váró, G.2
Chang, M.3
Ni, B.F.4
Needleman, R.5
Lanyi, J.K.6
-
54
-
-
0028023207
-
PH-induced structural changes in bacteriorhodopsin studied by Fourier transform infrared spec-troscopy
-
Száraz, S., Oesterhelt, D., and Ormos, P. (1994) pH-induced structural changes in bacteriorhodopsin studied by Fourier transform infrared spec-troscopy. Biophys. J. 67, 1706-1712
-
(1994)
Biophys. J.
, vol.67
, pp. 1706-1712
-
-
Száraz, S.1
Oesterhelt, D.2
Ormos, P.3
-
55
-
-
0016723355
-
Bacteriorho-dopsin: A light-driven proton pump in Halobacterium halobium
-
Lozier, R. H., Bogomolni, R. A., and Stoeckenius, W. (1975) Bacteriorho-dopsin: A light-driven proton pump in Halobacterium halobium. Biophys. J.15, 955-962
-
(1975)
Biophys. J.
, vol.15
, pp. 955-962
-
-
Lozier, R.H.1
Bogomolni, R.A.2
Stoeckenius, W.3
-
57
-
-
33748487890
-
PH-de-pendent transitions in xanthorhodopsin
-
Imasheva, E. S., Balashov, S. P., Wang, J. M., and Lanyi, J. K. (2006) pH-de-pendent transitions in xanthorhodopsin. Photochem. Photobiol. 82, 1406-1413
-
(2006)
Photochem. Photobiol.
, vol.82
, pp. 1406-1413
-
-
Imasheva, E.S.1
Balashov, S.P.2
Wang, J.M.3
Lanyi, J.K.4
-
58
-
-
80052784376
-
Photochemical characterization of a novel fungal rhodopsin from Phaeosphaeria nodo-rum
-
Fan, Y., Solomon, P., Oliver, R. P., and Brown, L. S. (2011) Photochemical characterization of a novel fungal rhodopsin from Phaeosphaeria nodo-rum. Biochim. Biophys. Acta 1807, 1457-1466
-
(2011)
Biochim. Biophys. Acta
, vol.1807
, pp. 1457-1466
-
-
Fan, Y.1
Solomon, P.2
Oliver, R.P.3
Brown, L.S.4
-
59
-
-
84879368809
-
PhotocycleofExiguobac-terium sibiricum rhodopsin characterized by low temperature trapping in the IR and time-resolved studies in the visible
-
Dioumaev, A. K., Petrovskaya, L. E., Wang, J. M., Balashov, S. P., Dolgikh, D. A., Kirpichnikov, M. P., andLanyi, J. K. (2013) PhotocycleofExiguobac-terium sibiricum rhodopsin characterized by low temperature trapping in the IR and time-resolved studies in the visible. J. Phys. Chem. B 117, 7235-7253
-
(2013)
J. Phys. Chem. B
, vol.117
, pp. 7235-7253
-
-
Dioumaev, A.K.1
Petrovskaya, L.E.2
Wang, J.M.3
Balashov, S.P.4
Dolgikh, D.A.5
Kirpichnikov, M.P.6
Lanyi, J.K.7
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