-
1
-
-
63849257530
-
Understanding the regulation of Group B Streptococcal virulence factors
-
PubMed
-
Rajagopal L. Understanding the regulation of Group B Streptococcal virulence factors. Future Microbiol 2009; 4:201-221. PubMed http://dx.doi.org/10.2217/17460913.4.2.201
-
(2009)
Future Microbiol
, vol.4
, pp. 201-221
-
-
Rajagopal, L.1
-
2
-
-
79960404094
-
Com-parative genomics and the role of lateral gene transfer in the evolution of bovine adapted
-
PubMed
-
Richards VP, Lang P, Bitar PD, Lefébure T, Schukken YH, Zadoks RN, Stanhope MJ. Com-parative genomics and the role of lateral gene transfer in the evolution of bovine adapted Strep-tococcus agalactiae. Infect Genet Evol 2011; 11:1263-1275. PubMed http://dx.doi.org/10.1016/j.meegid.2011.04.019
-
(2011)
Strep-tococcus Agalactiae. Infect Genet Evol
, vol.11
, pp. 1263-1275
-
-
Richards, V.P.1
Lang, P.2
Bitar, P.D.3
Lefébure, T.4
Schukken, Y.H.5
Zadoks, R.N.6
Stanhope, M.J.7
-
3
-
-
0036738413
-
Characterization of β-haemolytic Group B Streptococcus agalactiae in cultured seabream, Sparus auratus L., and wild mullet, Liza klunzingeri (Day), in Kuwait
-
Evans JJ, Klesius PH, Gilbert PM, Shoemaker CA, Al Sarawi MA, Landsberg J, Duremdez R, Al Marzouk A, Al Zenki S. Characterization of β-haemolytic Group B Streptococcus agalactiae in cultured seabream, Sparus auratus L., and wild mullet, Liza klunzingeri (Day), in Kuwait. J Fish Dis 2002; 25:505-513. http://dx.doi.org/10.1046/j.1365-2761.2002.00392.x
-
(2002)
J Fish Dis
, vol.25
, pp. 505-513
-
-
Evans, J.J.1
Klesius, P.H.2
Gilbert, P.M.3
Shoemaker, C.A.4
Al Sarawi, M.A.5
Landsberg, J.6
Duremdez, R.7
Al Marzouk, A.8
Al Zenki, S.9
-
4
-
-
62749107922
-
Aspects of the natural history and virulence of S. agalactiae infection in Nile tilapia
-
PubMed
-
Mian GF, Godoy DT, Leal CAG, Yuhara TY, Cos-ta GM, Figueiredo HCP. Aspects of the natural history and virulence of S. agalactiae infection in Nile tilapia. Vet Microbiol 2009; 136:180-183. PubMed http://dx.doi.org/10.1016/j.vetmic.2008.10.016
-
(2009)
Vet Microbiol
, vol.136
, pp. 180-183
-
-
Mian, G.F.1
Godoy, D.T.2
Leal, C.A.G.3
Yuhara, T.Y.4
Cos-Ta, G.M.5
Figueiredo, H.C.P.6
-
5
-
-
2442432486
-
Isolation of Streptococcus agalactiae from cultured silver pomfret, Pampus argenteus (Euphrasen), in Kuwait
-
PubMed
-
Duremdez R, Al-Marzouk A, Qasem JA, Al-Harbi A, Gharabally H. Isolation of Streptococcus agalactiae from cultured silver pomfret, Pampus argenteus (Euphrasen), in Kuwait. J Fish Dis 2004; 27:307-310. PubMed http://dx.doi.org/10.1111/j.1365-2761.2004.00538.x
-
(2004)
J Fish Dis
, vol.27
, pp. 307-310
-
-
Duremdez, R.1
Al-Marzouk, A.2
Qasem, J.A.3
Al-Harbi, A.4
Gharabally, H.5
-
6
-
-
25444524604
-
Genome analysis of multi-ple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial pan-genome
-
PubMed
-
Tettelin H, Masignani V, Cieslewicz MJ, Donati C, Medini D, Ward NL, Angiuoli SV, Crabtree J, Jones AL, Durkin AS. Genome analysis of multi-ple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial "pan-genome.". Proc Natl Acad Sci USA 2005; 102:13950-13955. PubMed http://dx.doi.org/10.1073/pnas.0506758102
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 13950-13955
-
-
Tettelin, H.1
Masignani, V.2
Cieslewicz, M.J.3
Donati, C.4
Medini, D.5
Ward, N.L.6
Angiuoli, S.V.7
Crabtree, J.8
Jones, A.L.9
Durkin, A.S.10
-
7
-
-
0031875613
-
Epidemiology of group B streptococ-cal disease in the United States: Shifting para-digms
-
PubMed
-
Schuchat A. Epidemiology of group B streptococ-cal disease in the United States: shifting para-digms. Clin Microbiol Rev 1998; 11:497-513. PubMed
-
(1998)
Clin Microbiol Rev
, vol.11
, pp. 497-513
-
-
Schuchat, A.1
-
8
-
-
85025226208
-
A serological differentiation of specifc types of bovine hemolytic streptococci (GROUP B)
-
Pub-Med
-
Lancefield RC. A serological differentiation of specifc types of bovine hemolytic streptococci (GROUP B). J Exp Med 1934; 59:441-458. Pub-Med http://dx.doi.org/10.1084/jem.59.4.441
-
(1934)
J Exp Med
, vol.59
, pp. 441-458
-
-
Lancefield, R.C.1
-
9
-
-
34548680932
-
Serotype IX, a Proposed New Strepto-coccus agalactiae Serotype
-
PubMed
-
Slotved HC, Kong F, Lambertsen L, Sauer S, Gil-bert GL. Serotype IX, a Proposed New Strepto-coccus agalactiae Serotype. J Clin Microbiol 2007; 45:2929-2936. PubMed http://dx.doi.org/10.1128/JCM.00117-07
-
(2007)
J Clin Microbiol
, vol.45
, pp. 2929-2936
-
-
Slotved, H.C.1
Kong, F.2
Lambertsen, L.3
Sauer, S.4
Gil-Bert, G.L.5
-
10
-
-
71549161461
-
Evaluation of three commercial broth media for pigment detection and identification of a group B Streptococcus (Streptococcus agalactiae)
-
PubMed
-
Carvalho MG, Facklam R, Jackson D, Beall B, McGee L. Evaluation of three commercial broth media for pigment detection and identification of a group B Streptococcus (Streptococcus agalactiae). J Clin Microbiol 2009; 47:4161-4163. PubMed http://dx.doi.org/10.1128/JCM.01374-09
-
(2009)
J Clin Microbiol
, vol.47
, pp. 4161-4163
-
-
Carvalho, M.G.1
Facklam, R.2
Jackson, D.3
Beall, B.4
McGee, L.5
-
11
-
-
33744828254
-
Genomic diversity and evolution within the species Streptococcus agalactiae
-
PubMed
-
Brochet M, Couvé E, Zouine M, Vallaeys T, Rusniok C, Lamy M, Buchrieser C, Trieu-Cout P, Kunst F, Poyart C, Glaser P. Genomic diversity and evolution within the species Streptococcus agalactiae. Microbes Infect 2006; 8:1227-1243. PubMed http://dx.doi.org/10.1016/j.micinf.2005.11.010
-
(2006)
Microbes Infect
, vol.8
, pp. 1227-1243
-
-
Brochet, M.1
Couvé, E.2
Zouine, M.3
Vallaeys, T.4
Rusniok, C.5
Lamy, M.6
Buchrieser, C.7
Trieu-Cout, P.8
Kunst, F.9
Poyart, C.10
Glaser, P.11
-
12
-
-
2442543435
-
Hyperinvasive Neonatal Group B Streptococcus Has Arisen from a Bovine Ancestor
-
PubMed
-
Bisharat N, Crook DW, Leigh J, Harding RM, Ward PN, Coffey TJ, Maiden MC, Peto T, Jones N. Hyperinvasive Neonatal Group B Streptococcus Has Arisen from a Bovine Ancestor. J Clin Microbiol 2004; 42:2161-2167. PubMed http://dx.doi.org/10.1128/JCM.42.5.2161-2167.2004
-
(2004)
J Clin Microbiol
, vol.42
, pp. 2161-2167
-
-
Bisharat, N.1
Crook, D.W.2
Leigh, J.3
Harding, R.M.4
Ward, P.N.5
Coffey, T.J.6
Maiden, M.C.7
Peto, T.8
Jones, N.9
-
13
-
-
0001167841
-
Streptococcal Fish Patho-gen
-
PubMed
-
Robinson JA, Meyer FP. Streptococcal Fish Patho-gen. J Bacteriol 1966; 92:512. PubMed
-
(1966)
J Bacteriol
, vol.92
, pp. 512
-
-
Robinson, J.A.1
Meyer, F.P.2
-
14
-
-
71549168579
-
Genotyping of Streptococcus agalactiae strains isolated from fish, human and cattle and their virulence potential in Nile tilapia
-
PubMed
-
Pereira UP, Mian GF, Oliveira ICM, Benchetrit LC, Costa GM, Figueiredo HCP. Genotyping of Streptococcus agalactiae strains isolated from fish, human and cattle and their virulence potential in Nile tilapia. Vet Microbiol 2010; 140:186-192. PubMed http://dx.doi.org/10.1016/j.vetmic.2009.07.025
-
(2010)
Vet Microbiol
, vol.140
, pp. 186-192
-
-
Pereira, U.P.1
Mian, G.F.2
Oliveira, I.C.M.3
Benchetrit, L.C.4
Costa, G.M.5
Figueiredo, H.C.P.6
-
15
-
-
43449108562
-
The minimum information about a genome sequence (MIGS) specification
-
PubMed
-
Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV. The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol 2008; 26:541-547. PubMed http://dx.doi.org/10.1038/nbt1360
-
(2008)
Nat Biotechnol
, vol.26
, pp. 541-547
-
-
Field, D.1
Garrity, G.2
Gray, T.3
Morrison, N.4
Selengut, J.5
Sterk, P.6
Tatusova, T.7
Thomson, N.8
Allen, M.J.9
Angiuoli, S.V.10
-
16
-
-
0025300402
-
Towards a natural system of organisms: Proposal for the do-mains Archaea, Bacteria, and
-
PubMed
-
Woese CR, Kandler O, Wheelis ML. Towards a natural system of organisms: proposal for the do-mains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci USA 1990; 87:4576-4579. PubMed http://dx.doi.org/10.1073/pnas.87.12.4576
-
(1990)
Eucarya. Proc Natl Acad Sci USA
, vol.87
, pp. 4576-4579
-
-
Woese, C.R.1
Kandler, O.2
Wheelis, M.L.3
-
17
-
-
0017843547
-
Proposals Concerning the Higher Taxa of Bacteria
-
Gibbons NE, Murray RGE. Proposals Concerning the Higher Taxa of Bacteria. Int J Syst Bacteriol 1978; 28:1-6. http://dx.doi.org/10.1099/00207713-28-1-1
-
(1978)
Int J Syst Bacteriol
, vol.28
, pp. 1-6
-
-
Gibbons, N.E.1
Murray, R.G.E.2
-
18
-
-
0000685441
-
The Road Map to the Man-ual
-
In: Garrity GM, Boone DR, Castenholz RW, Springer, New York
-
Garrity GM, Holt JG. The Road Map to the Man-ual. In: Garrity GM, Boone DR, Castenholz RW (eds), Bergey's Manual of Systematic Bacteriolo-gy, Second Edition, Volume 1, Springer, New York, 2001, p. 119-169.
-
(2001)
Bergey's Manual of Systematic Bacteriolo-gy, Second Edition
, vol.1
, pp. 119-169
-
-
Garrity, G.M.1
Holt, J.G.2
-
19
-
-
0344278514
-
The Higher Taxa, or, a Place for Everything...;?
-
In: Holt JG, The Williams and Wilkins Co., Baltimore
-
Murray RGE. The Higher Taxa, or, a Place for Everything...;? In: Holt JG (ed), Bergey's Manual of Systematic Bacteriology, First Edition, Volume 1, The Williams and Wilkins Co., Baltimore, 1984, p. 31-34.
-
(1984)
Bergey's Manual of Systematic Bacteriology, First Edition
, vol.1
, pp. 31-34
-
-
Murray, R.G.E.1
-
20
-
-
80053365349
-
List of new names and new combina-tions previously effectively, but not validly, pub-lished. List no. 132
-
Euzéby J. List of new names and new combina-tions previously effectively, but not validly, pub-lished. List no. 132. Int J Syst Evol Microbiol 2010; 60:469-472. http://dx.doi.org/10.1099/ijs.0.022855-0
-
(2010)
Int J Syst Evol Microbiol
, vol.60
, pp. 469-472
-
-
Euzéby, J.1
-
21
-
-
80054899466
-
Class I. Bacilli class nov
-
In: De Vos P, Garrity G, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer KH, Whitman WB, Springer-Verlag, New York
-
Ludwig W, Schleifer KH, Whitman WB. Class I. Bacilli class nov. In: De Vos P, Garrity G, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer KH, Whitman WB (eds), Bergey's Manual of Systemat-ic Bacteriology, Second Edition, Volume 3, Springer-Verlag, New York, 2009, p. 19-20.
-
(2009)
Bergey's Manual of Systemat-ic Bacteriology, Second Edition
, vol.3
, pp. 19-20
-
-
Ludwig, W.1
Schleifer, K.H.2
Whitman, W.B.3
-
22
-
-
79954752891
-
Order II. Lactobacillales ord. nov
-
In: De Vos P, Garrity G, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer KH, Whitman WB, Springer-Verlag, New York
-
Ludwig W, Schleifer KH, Whitman WB. Order II. Lactobacillales ord. nov. In: De Vos P, Garrity G, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer KH, Whitman WB (eds), Bergey's Manu-al of Systematic Bacteriology, Second Edition, Volume 3, Springer-Verlag, New York, 2009, p. 464.
-
(2009)
Bergey's Manu-al of Systematic Bacteriology, Second Edition
, vol.3
, pp. 464
-
-
Ludwig, W.1
Schleifer, K.H.2
Whitman, W.B.3
-
24
-
-
0006261159
-
Family II. Streptococcaceae
-
In: Buchanan RE, Gibbons NE, Eighth Edition, The Williams and Wilkins Co., Baltimore
-
Deibel RH, Seeley HW. Family II. Streptococcaceae. In: Buchanan RE, Gibbons NE (eds), Bergey's Manual of Determinative Bacteri-ology, Eighth Edition, The Williams and Wilkins Co., Baltimore, 1974, p. 490-515.
-
(1974)
Bergey's Manual of Determinative Bacteri-ology
, pp. 490-515
-
-
Deibel, R.H.1
Seeley, H.W.2
-
25
-
-
84879366713
-
-
Bergmann JF (ed), Microorganismen bei den Wund-Infections-Krankheiten des Menschen., Wiesbaden
-
Rosenbach FJ. In: Bergmann JF (ed), Microorganismen bei den Wund-Infections-Krankheiten des Menschen., Wiesbaden, 1884, p. 1-122.
-
(1884)
, pp. 1-122
-
-
Rosenbach, F.J.1
-
26
-
-
0006261159
-
Streptococcus Rosenbach 1884, 22
-
In: Buchanan RE, Gibbons NE, Eighth Edition, The Williams and Wil-kins Co., Baltimore
-
Deibel RH, Seeley HW., Genus I. Streptococcus Rosenbach 1884, 22. In: Buchanan RE, Gibbons NE (eds), Bergey's Manual of Determinative Bac-teriology, Eighth Edition, The Williams and Wil-kins Co., Baltimore, 1974, p. 490-509.
-
(1974)
Bergey's Manual of Determinative Bac-teriology
, pp. 490-509
-
-
Deibel, R.H.1
Seeley, H.W.2
Genus, I.3
-
27
-
-
0004145293
-
-
First Edition, J.F. Lehmann, München
-
Lehmann KB, Neumann R. Atlas und Grundriss der Bakteriologie und Lehrbuch der speziellen bakteriologischen Diagnostik, First Edition, J.F. Lehmann, München, 1896, p. 1-448.
-
(1896)
Atlas Und Grundriss Der Bakteriologie Und Lehrbuch Der Speziellen Bakteriologischen Diagnostik
, pp. 1-448
-
-
Lehmann, K.B.1
Neumann, R.2
-
28
-
-
84872015247
-
Opinions 4, 6, 7, 8, 9, 10, 11, 12, 13, 14 Opinion 8
-
Judicial Commission
-
Judicial Commission. Opinions 4, 6, 7, 8, 9, 10, 11, 12, 13, 14 Opinion 8. Int Bull Bacteriol Nomencl Taxon 1954; 4:141-158.
-
(1954)
Int Bull Bacteriol Nomencl Taxon
, vol.4
, pp. 141-158
-
-
-
29
-
-
84879389113
-
Designation of the neotype strain of Streptococcus agalactiae Lehmann and Neumann
-
Judicial Commission. Opinion 27
-
Judicial Commission. Opinion 27: Designation of the neotype strain of Streptococcus agalactiae Lehmann and Neumann. Int Bull Bacteriol Nomencl Taxon 1963; 13:37.
-
(1963)
Int Bull Bacteriol Nomencl Taxon
, vol.13
, pp. 37
-
-
-
30
-
-
79955820719
-
The Firmicutes
-
In: Garrity GM, Boone DR, Castenholz RW, Springer, New York
-
Whiley RA, Hardie JM. The Firmicutes. In: Garrity GM, Boone DR, Castenholz RW (eds), Bergey's Manual of Systematic Bacteriology, Second Edi-tion, Volume 3, Springer, New York, 2001, p. 655-735.
-
(2001)
Bergey's Manual of Systematic Bacteriology, Second Edi-tion
, vol.3
, pp. 655-735
-
-
Whiley, R.A.1
Hardie, J.M.2
-
31
-
-
18644378733
-
Genome sequence of Strepto-coccus agalactiae, a pathogen causing invasive neonatal disease
-
PubMed
-
Glaser P, Rusniok C, Buchrieser C, Chevalier F, Frangeul L, Msadek T, Zouine M, Couvé E, Lalioui L, Poyart C. Genome sequence of Strepto-coccus agalactiae, a pathogen causing invasive neonatal disease. Mol Microbiol 2002; 45:1499-1513. PubMed http://dx.doi.org/10.1046/j.1365-2958.2002.03126.x
-
(2002)
Mol Microbiol
, vol.45
, pp. 1499-1513
-
-
Glaser, P.1
Rusniok, C.2
Buchrieser, C.3
Chevalier, F.4
Frangeul, L.5
Msadek, T.6
Zouine, M.7
Couvé, E.8
Lalioui, L.9
Poyart, C.10
-
32
-
-
48449102007
-
MALDI-TOF mass spectrometry as a tool for dif-ferentiation of invasive and noninvasive Strepto-coccus pyogenes isolates
-
PubMed
-
Moura H, Woolfitt AR, Carvalho MG, Pavlopoulos A, Teixeira LM, Satten GA, Barr JR. MALDI-TOF mass spectrometry as a tool for dif-ferentiation of invasive and noninvasive Strepto-coccus pyogenes isolates. FEMS Immunol Med Microbiol 2008; 53:333-342. PubMed http://dx.doi.org/10.1111/j.1574-695X.2008.00428.x
-
(2008)
FEMS Immunol Med Microbiol
, vol.53
, pp. 333-342
-
-
Moura, H.1
Woolfitt, A.R.2
Carvalho, M.G.3
Pavlopoulos, A.4
Teixeira, L.M.5
Satten, G.A.6
Barr, J.R.7
-
33
-
-
0034069495
-
Gene ontology: Tool for the unification of biology. The Gene Ontology Con-sortium
-
PubMed
-
Ashburner M, Ball CA, Blake JA, Botstein D, But-ler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, et al. Gene ontology: tool for the unification of biology. The Gene Ontology Con-sortium. Nat Genet 2000; 25:25-29. PubMed http://dx.doi.org/10.1038/75556
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
But-Ler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
34
-
-
0034924910
-
Contribution of Mn-cofactored superoxide dismutase (SodA) to the virulence of
-
PubMed
-
Poyart C, Pellegrini E, Gaillot O, Boumaila C, Baptista M, Trieu-Cuot P. Contribution of Mn-cofactored superoxide dismutase (SodA) to the virulence of Streptococcus agalactiae. Infect Immun 2001; 69:5098-5106. PubMed http://dx.doi.org/10.1128/IAI.69.8.5098-5106.2001
-
(2001)
Streptococcus Agalactiae. Infect Immun
, vol.69
, pp. 5098-5106
-
-
Poyart, C.1
Pellegrini, E.2
Gaillot, O.3
Boumaila, C.4
Baptista, M.5
Trieu-Cuot, P.6
-
35
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
PubMed
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wal-lace IM, Wilm A, Lopez R, et al. Clustal W and Clustal X version 2.0. Bioinformatics 2007; 23:2947-2948. PubMed http://dx.doi.org/10.1093/bioinformatics/btm404
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wal-Lace, I.M.8
Wilm, A.9
Lopez, R.10
-
36
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evo-lutionary distance, and maximum parsimony methods
-
PubMed
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evo-lutionary distance, and maximum parsimony methods. Mol Biol Evol 2011; 28:2731-2739. PubMed http://dx.doi.org/10.1093/molbev/msr121
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
37
-
-
75549086416
-
The Genomes On Line Database (GOLD) in 2009: Status of genomic and metagenomic pro-jects and their associated metadata
-
PubMed
-
Liolios K, Chen IM, Mavromatis K, Tavernarakis N, Hugenholtz P, Markowitz VM, Kyrpides NC. The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic pro-jects and their associated metadata. Nucleic Acids Res 2010; 38:D346-D354. PubMed http://dx.doi.org/10.1093/nar/gkp848
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Liolios, K.1
Chen, I.M.2
Mavromatis, K.3
Tavernarakis, N.4
Hugenholtz, P.5
Markowitz, V.M.6
Kyrpides, N.C.7
-
38
-
-
0025811139
-
A simple method for the isolation of chromosomal DNA from Gram posi-tive or acid-fast bacteria
-
PubMed
-
Bollet C, Gevaudan MJ, de Lamballerie X, Zandotti C, de Micco P. A simple method for the isolation of chromosomal DNA from Gram posi-tive or acid-fast bacteria. Nucleic Acids Res 1991; 19:1955. PubMed http://dx.doi.org/10.1093/nar/19.8.1955
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 1955
-
-
Bollet, C.1
Gevaudan, M.J.2
de Lamballerie, X.3
Zandotti, C.4
de Micco, P.5
-
39
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
PubMed
-
Zerbino DR, Birney E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 2008; 18:821-829. PubMed http://dx.doi.org/10.1101/gr.074492.107
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
40
-
-
43149085041
-
De novo bacterial genome sequenc-ing: Millions of very short reads assembled on a desktop computer
-
PubMed
-
Hernandez D, François P, Farinelli L, Osterås M, Schrenzel J. De novo bacterial genome sequenc-ing: millions of very short reads assembled on a desktop computer. Genome Res 2008; 18:802-809. PubMed http://dx.doi.org/10.1101/gr.072033.107
-
(2008)
Genome Res
, vol.18
, pp. 802-809
-
-
Hernandez, D.1
François, P.2
Farinelli, L.3
Osterås, M.4
Schrenzel, J.5
-
41
-
-
77950658346
-
Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps
-
PubMed
-
Tsai IJ, Otto TD, Berriman M. Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps. Genome Biol 2010; 11:R41. PubMed http://dx.doi.org/10.1186/gb-2010-11-4-r41
-
(2010)
Genome Biol
, vol.11
-
-
Tsai, I.J.1
Otto, T.D.2
Berriman, M.3
-
42
-
-
84879371209
-
-
G4ALL
-
G4ALL. http://g4all.sourceforge.net
-
-
-
-
43
-
-
84873945621
-
Simplifier: A web tool to eliminate redundant NGS contigs
-
PubMed
-
Ramos RTJ, Carneiro AR, Azevedo V, Schneider MP, Barh D, Silva A. Simplifier: a web tool to eliminate redundant NGS contigs. Bioinformation 2012; 8:996-999. PubMed http://dx.doi.org/10.6026/97320630008996
-
(2012)
Bioinformation
, vol.8
, pp. 996-999
-
-
Ramos, R.T.J.1
Carneiro, A.R.2
Azevedo, V.3
Schneider, M.P.4
Barh, D.5
Silva, A.6
-
44
-
-
0033485517
-
Improved microbial gene identifica-tion with GLIMMER
-
PubMed
-
Delcher AL, Harmon D, Kasif S, White O, Salzberg SL. Improved microbial gene identifica-tion with GLIMMER. Nucleic Acids Res 1999; 27:4636-4641. PubMed http://dx.doi.org/10.1093/nar/27.23.4636
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 4636-4641
-
-
Delcher, A.L.1
Harmon, D.2
Kasif, S.3
White, O.4
Salzberg, S.L.5
-
45
-
-
34250665888
-
RNAmmer: Consistent and rapid annotation of ribosomal RNA genes
-
PubMed
-
Lagesen K, Hallin P, Rodland EA, Staerfeldt HH, Rognes T, Ussery DW. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucle-ic Acids Res 2007; 35:3100-3108. PubMed http://dx.doi.org/10.1093/nar/gkm160
-
(2007)
Nucle-ic Acids Res
, vol.35
, pp. 3100-3108
-
-
Lagesen, K.1
Hallin, P.2
Rodland, E.A.3
Staerfeldt, H.H.4
Rognes, T.5
Ussery, D.W.6
-
46
-
-
0030854739
-
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
-
PubMed
-
Lowe TM, Eddy SR. tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence. Nucleic Acids Res 1997; 25:955-964. PubMed
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
47
-
-
0034800374
-
InterProScan --an inte-gration platform for the signature-recognition methods in InterPro
-
PubMed
-
Zdobnov EM, Apweiler R. InterProScan --an inte-gration platform for the signature-recognition methods in InterPro. Bioinformatics 2001; 17:847-848. PubMed http://dx.doi.org/10.1093/bioinformatics/17.9.847
-
(2001)
Bioinformatics
, vol.17
, pp. 847-848
-
-
Zdobnov, E.M.1
Apweiler, R.2
-
48
-
-
0033635022
-
Artemis: Sequence visualization and annotation
-
PubMed
-
Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, Rajandream MA, Barrell B. Artemis: sequence visualization and annotation. Bioinformatics 2000; 16:944-945. PubMed http://dx.doi.org/10.1093/bioinformatics/16.10.944
-
(2000)
Bioinformatics
, vol.16
, pp. 944-945
-
-
Rutherford, K.1
Parkhill, J.2
Crook, J.3
Horsnell, T.4
Rice, P.5
Rajandream, M.A.6
Barrell, B.7
-
49
-
-
84861334159
-
Comparing thousands of circular genomes using the CGView Comparison Tool
-
PubMed
-
Grant JR, Arantes AS, Stothard P. Comparing thousands of circular genomes using the CGView Comparison Tool. BMC Genomics 2012; 13:202. PubMed http://dx.doi.org/10.1186/1471-2164-13-202
-
(2012)
BMC Genomics
, vol.13
, pp. 202
-
-
Grant, J.R.1
Arantes, A.S.2
Stothard, P.3
|