The annotation-enriched non-redundant patent sequence databases

Database

Volumn 2013, Issue , 2013, Pages

  Li, Weizhong ^a   Kondratowicz, Bartosz ^b   McWilliam, Hamish ^a   Nauche, Stephane ^b   Lopez, Rodrigo ^a  

^a WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^b EUROPEAN PATENT OFFICE   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

ACCESS TO INFORMATION; AMINO ACID SEQUENCE; ARTICLE; INFORMATION PROCESSING; MOLECULAR GENETICS; NUCLEIC ACID DATABASE; NUCLEOTIDE SEQUENCE; PATENT;

ACCESS TO INFORMATION; AMINO ACID SEQUENCE; BASE SEQUENCE; DATA COLLECTION; DATABASES, NUCLEIC ACID; MOLECULAR SEQUENCE ANNOTATION; PATENTS AS TOPIC;

MLCS; MLOWN;

EID: 84879333261     PISSN: 17580463     EISSN: None     Source Type: Journal    
DOI: 10.1093/database/bat005     Document Type: Article

References (18)

1. Seeber,F. (2007) Patent searches as a complement to literature searches in the life sciences - a 'how-to' tutorial. Nat. Protoc., 2, 2418-2428.
2. Thangaraj,H. (2007) Information from patent office could aid replication. Nature, 447, 638.
3. Dufresne,G. and Duval,M. (2004) Genetic sequences: how are they patented? Nat. Biotechnol., 22, 231-232.
4. Dufresne,G., Takács,L., Heus,H.C. et al. (2002) Patent searches for genetic sequences: how to retrieve relevant records from patented sequence databases. Nat. Biotechnol., 20, 1269-1271.
5. McDowall,J. (2011) Prioritizing patent sequence search results using annotation-rich data. World Pat. Inform., 33, 235-239.
6. Li,W., McWilliam,H., Richart de la Torre,A. et al. (2010) Non-redundant patent sequence databases with value-added annotations at two levels. Nucleic Acids Res., 38, D52-D56.
7. Leinonen,R., Akhtar,R., Birney,E. et al. (2011) The European nucleotide archive. Nucleic Acids Res., 39, D28-D31.
8. Benson,D.A., Karsch-Mizrachi,I., Clark,K. et al. (2012) GenBank. Nucleic Acids Res., 40, D48-D53.
9. Kaminuma,E., Kosuge,T., Kodama,Y. et al. (2011) DDBJ progress report. Nucleic Acids Res., 39, D22-D27.
10. Kallas,P. (2006) Open patent services. World Pat. Inform., 28, 296-304.
11. Pearson,W.R. and Lipman,D.J. (1988) Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA, 85, 2444-2448.
12. Altschul,S.F., Madden,T.L., Schäffer,A.A. et al. (1997) Gapped BLAST and PSIBLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
13. Lopez,R., Silventoinen,V., Robinson,S. et al. (2003) WU-Blast2 server at the European Bioinformatics Institute. Nucleic Acids Res., 31, 3795-3798.
14. Li,W., McWilliam,H., Goujon,M. et al. (2012) PSI-Search: iterative HOE-reduced profile SSEARCH searching. Bioinformatics, 28, 1650-1651.
15. McWilliam,H., Valentin,F., Goujon,M. et al. (2009) Web services at the European Bioinformatics Institute-2009. Nucleic Acids Res., 37, W6-W10.
16. Valentin,F., Squizzato,S., Goujon,M. et al. (2010) Fast and efficient searching of biological data resources - using EB-eye. Brief. Bioinform., 1, 375-384.
17. Rouse,R.J., Castagnetto,J. and Niedner,R.H. (2005) PatGen - a consolidated resource for searching genetic patent sequences. Bioinformatics, 21, 1707-1708.
18. Lee,B., Kim,T., Kim,S.K. et al. (2007) Patome: a database server for biological sequence annotation and analysis in issued patents and published patent applications. Nucleic Acids Res., 35, D47-D50.