메뉴 건너뛰기




Volumn 28, Issue 12, 2012, Pages 1650-1651

PSI-Search: Iterative HOE-reduced profile SSEARCH searching

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOLOGY; COMPUTER LANGUAGE; COMPUTER PROGRAM; INTERNET; METHODOLOGY; PROTEIN DATABASE; PROTEIN MOTIF; SEQUENCE ALIGNMENT;

EID: 84863531160     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts240     Document Type: Article
Times cited : (28)

References (17)
  • 1
    • 64549145787 scopus 로고    scopus 로고
    • PSIBLAST_PairwiseStatSig: reordering PSI-BLAST hits using pairwise statistical significance
    • Agrawal, A. and Huang, X. (2009) PSIBLAST_PairwiseStatSig: reordering PSI-BLAST hits using pairwise statistical significance. Bioinformatics, 25, 1082-1083.
    • (2009) Bioinformatics , vol.25 , pp. 1082-1083
    • Agrawal, A.1    Huang, X.2
  • 2
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • Altschul, S.F. et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1
  • 3
    • 27144489108 scopus 로고    scopus 로고
    • Protein database searches using compositionally adjusted substitution matrices
    • Altschul, S.F. et al. (2005) Protein database searches using compositionally adjusted substitution matrices. FEBS J., 272, 5101-5109.
    • (2005) FEBS J , vol.272 , pp. 5101-5109
    • Altschul, S.F.1
  • 4
    • 63349085642 scopus 로고    scopus 로고
    • PSI-BLAST pseudocounts and the minimum description length principle
    • Altschul, S.F. et al. (2009) PSI-BLAST pseudocounts and the minimum description length principle. Nucleic Acids Res., 37, 815-824.
    • (2009) Nucleic Acids Res , vol.37 , pp. 815-824
    • Altschul, S.F.1
  • 5
    • 33747854648 scopus 로고    scopus 로고
    • Cascade PSI-BLAST web server: a remote homology search tool for relating protein domains
    • Bhadra, R. et al. (2006) Cascade PSI-BLAST web server: a remote homology search tool for relating protein domains. Nucleic Acids Res., 34, W143-W146.
    • (2006) Nucleic Acids Res , vol.34
    • Bhadra, R.1
  • 6
    • 80055082271 scopus 로고    scopus 로고
    • Accelerated profileHMMsearches
    • Eddy, S.R. (2011) Accelerated profileHMMsearches. PLoS Comput. Biol., 7, e1002195.
    • (2011) PLoS Comput. Biol. , vol.7
    • Eddy, S.R.1
  • 7
    • 77952296596 scopus 로고    scopus 로고
    • Homologous over-extension: a challenge for iterative similarity searches
    • Gonzalez, M.W. and Pearson, W.R. (2010a) Homologous over-extension: a challenge for iterative similarity searches. Nucleic Acids Res., 38, 2177-2189.
    • (2010) Nucleic Acids Res , vol.38 , pp. 2177-2189
    • Gonzalez, M.W.1    Pearson, W.R.2
  • 8
    • 77956545743 scopus 로고    scopus 로고
    • RefProtDom: a protein database with improved domain boundaries and homology relationships
    • Gonzalez, M.W. and Pearson, W.R. (2010b) RefProtDom: a protein database with improved domain boundaries and homology relationships. Bioinformatics, 26, 2361-2362.
    • (2010) Bioinformatics , vol.26 , pp. 2361-2362
    • Gonzalez, M.W.1    Pearson, W.R.2
  • 9
    • 77955591777 scopus 로고    scopus 로고
    • Hidden Markov model speed heuristic and iterative HMM search procedure
    • Johnson, L.S. et al. (2010) Hidden Markov model speed heuristic and iterative HMM search procedure. BMC Bioinformatics, 11, 431.
    • (2010) BMC Bioinformatics , vol.11 , pp. 431
    • Johnson, L.S.1
  • 10
    • 77954209308 scopus 로고    scopus 로고
    • HangOut: generating clean PSI-BLAST profiles for domains with long insertions
    • Kim, B.H. et al. (2010) HangOut: generating clean PSI-BLAST profiles for domains with long insertions. Bioinformatics, 26, 1564-1565.
    • (2010) Bioinformatics , vol.26 , pp. 1564-1565
    • Kim, B.H.1
  • 11
    • 78650567599 scopus 로고    scopus 로고
    • A performance enhanced PSI-BLAST based on hybrid alignment
    • Li, Y. et al. (2011) A performance enhanced PSI-BLAST based on hybrid alignment. Bioinformatics, 27, 31-37.
    • (2011) Bioinformatics , vol.27 , pp. 31-37
    • Li, Y.1
  • 12
    • 0025950944 scopus 로고
    • Searching protein sequence libraries: comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms
    • Pearson, W.R. (1991) Searching protein sequence libraries: comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms. Genomics, 11, 635-650.
    • (1991) Genomics , vol.11 , pp. 635-650
    • Pearson, W.R.1
  • 13
    • 51749115758 scopus 로고    scopus 로고
    • Powerful fusion: PSI-BLAST and consensus sequences
    • Przybylski, D. and Rost, B. (2008) Powerful fusion: PSI-BLAST and consensus sequences. Bioinformatics, 24, 1987-1993.
    • (2008) Bioinformatics , vol.24 , pp. 1987-1993
    • Przybylski, D.1    Rost, B.2
  • 14
    • 0034201441 scopus 로고    scopus 로고
    • EMBOSS: the European molecular biology open software suite
    • Rice, P. et al. (2000) EMBOSS: the European molecular biology open software suite. Trends Genet., 16, 276-277.
    • (2000) Trends Genet , vol.16 , pp. 276-277
    • Rice, P.1
  • 15
    • 0019887799 scopus 로고
    • Identification of common molecular subsequences
    • Smith, T.F. and Waterman, M.S. (1981). Identification of common molecular subsequences. J. Mol. Biol. 147, 195-197.
    • (1981) J. Mol. Biol. , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 16
    • 46249130240 scopus 로고    scopus 로고
    • The effectiveness of position- and composition-specific gap costs for protein similarity searches
    • Stojmirovíc, A. et al. (2008) The effectiveness of position- and composition-specific gap costs for protein similarity searches. Bioinformatics, 24, i15-i23.
    • (2008) Bioinformatics , vol.24
    • Stojmirovíc, A.1
  • 17
    • 48449090518 scopus 로고    scopus 로고
    • SCANPS: a web server for iterative protein sequence database searching by dynamic programing, with display in a hierarchical SCOP browser
    • Walsh, T.P. et al. (2008) SCANPS: a web server for iterative protein sequence database searching by dynamic programing, with display in a hierarchical SCOP browser. Nucleic Acids Res., 36, W25-W29.
    • (2008) Nucleic Acids Res , vol.36
    • Walsh, T.P.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.