Tetrahymena functional genomics database (TetraFGD): An integrated resource for Tetrahymena functional genomics

Database

Volumn 2013, Issue , 2013, Pages

  Xiong, Jie ^a   Lu, Yuming ^a   Feng, Jinmei ^a,b   Yuan, Dongxia ^a   Tian, Miao ^a,c   Chang, Yue ^a,c   Fu, Chengjie ^a   Wang, Guangying ^a,c   Zeng, Honghui ^a   Miao, Wei ^a  

^a INSTITUTE OF HYDROBIOLOGY   (China)

^b KUNMING INSTITUTE OF ZOOLOGY   (China)

^c UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; ARTICLE; DNA MICROARRAY; DNA SEQUENCE; GENE REGULATORY NETWORK; GENETIC DATABASE; GENETICS; GENOMICS; INTERNET; TETRAHYMENA;

ANIMALS; DATABASES, GENETIC; GENE REGULATORY NETWORKS; GENOMICS; INTERNET; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; SEQUENCE ANALYSIS, DNA; TETRAHYMENA;

MLCS; MLOWN;

EID: 84879324446     PISSN: 17580463     EISSN: None     Source Type: Journal    
DOI: 10.1093/database/bat008     Document Type: Article

References (17)

1. Asai,D.J. and Forney,J.D. (eds). (2000) Tetrahymena thermophila. Methods in Cell Biology. Academic press, Orlando, FL.
2. Gibbons,I.R. and Rowe,A.J. (1965) Dynein - a protein with adenosine triphosphatase activity from cilia. Science, 149, 424-426.
3. Kruger,K., Grabowski,P.J., Zaug,A.J. et al. (1982) Self-splicing RNA: autoexcision and autocyclization of the ribosomal RNA intervening sequence of Tetrahymena. Cell, 31, 147-157.
4. Blackburn,E.H. and Gall,J.G. (1978) A tandemly repeated sequence at the termini of the extrachromosomal ribosomal RNA genes in Tetrahymena. J. Mol. Biol., 120, 33-53.
5. Greider,C.W. and Blackburn,E.H. (1985) Identification of a specific telomere terminal transferase activity in Tetrahymena extracts. Cell, 43, 405-413.
6. Yao,M.C. and Chao,J.L. (2005) RNA-guided DNA deletion in Tetrahymena: an RNAi-based mechanism for programmed genome rearrangements. Annu. Rev. Genet., 39, 537-559.
7. Eisen,J.A., Coyne,R.S., Wu,M. et al. (2006) Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote. PLoS Biol., 4, e286.
8. Stover,N.A., Krieger,C.J., Binkley,G. et al. (2006) Tetrahymena genome database (TGD): a new genomic resource for Tetrahymena thermophila research. Nucleic Acids Res., 34, D500-D5003.
9. Stover,N.A., Punia,R.S., Bowen,M.S. et al. (2012) Tetrahymena Genome Database Wiki: a community-maintained model organism database. Database (Oxford), 2012, bas007.
10. Miao,W., Xiong,J., Bowen,J. et al. (2009) Microarray analyses of gene expression during the Tetrahymena thermophila life cycle. PLoS One, 4, e4429.
11. Xiong,J., Lu,X., Lu,Y. et al. (2011) Tetrahymena Gene Expression Database (TGED): a resource of microarray data and co-expression analyses for Tetrahymena. Sci. China Life Sci., 54, 65-67.
12. Xiong,J., Yuan,D.X., Fillingham,J.S. et al. (2011) Gene network landscape of the ciliate Tetrahymena thermophila. PLoS One, 6, e20124.
13. Xiong,J., Lu,X.Y., Zhou,Z.M. et al. (2012) Transcriptome analysis of the model protozoan, Tetrahymena thermophila, using deep RNA sequencing. PLoS One, 7, e30630.
14. Faith,J.J., Hayete,B., Thaden,J.T. et al. (2007) Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles. PLoS Biol., 5, 54-66.
15. Nina,P.B., Dudkina,N.V., Kane,L.A. et al. (2010) Highly divergent mitochondrial ATP synthase complexes in Tetrahymena thermophila. PLoS Biol., 8, e1000418.
16. Smoot,M.E., Ono,K., Ruscheinski,J. et al. (2011) Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics, 27, 431-432.
17. Altschul,S.F., Madden,T.L., Schaffer,A.A. et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.