GammaProteobacteria as a potential bioindicator of a multiple contamination by polycyclic aromatic hydrocarbons (PAHs) in agricultural soils

Environmental Pollution

Volumn 180, Issue , 2013, Pages 199-205

  Niepceron, Maïté ^a,b   Martin Laurent, Fabrice ^c,d   Crampon, Marc ^a,b   Portet Koltalo, Florence ^b   Akpa Vinceslas, Marthe ^e   Legras, Marc ^f   Bru, David ^d   Bureau, Fabrice ^e   Bodilis, Josselin ^a  

^a UNIVERSITÉ DE ROUEN   (France)

^b UNIVERSITÉ DE ROUEN   (France)

^c UNIV BOURGOGNE FRANCHE COMTÉ   (France)

^d CEMAGREF   (France)

^e UNIVERSITÉ DE ROUEN   (France)

^f ESITPA   (France)

Author keywords

Agricultural soil; Bioindicator; Polycyclic aromatic hydrocarbon; Pseudomonas; qPCR

Indexed keywords

AGRICULTURAL SOILS; BACTERIAL COMMUNITY; BIOINDICATOR; GAMMAPROTEOBACTERIA; PERMANENT GRASSLAND; POLYCYCLIC AROMATIC HYDROCARBONS (PAHS); PSEUDOMONAS; QPCR;

AGRICULTURE; BACTERIA; CONTAMINATION; MIXTURES; POLYCYCLIC AROMATIC HYDROCARBONS; POLYMERASE CHAIN REACTION;

SOILS;

PHENANTHRENE; POLYCYCLIC AROMATIC HYDROCARBON; RNA 16S;

AGRICULTURAL SOIL; BIOINDICATOR; GRASSLAND SOIL; MICROCOSM; PAH; POLYMERASE CHAIN REACTION; SOIL POLLUTION;

ARTICLE; BACTERIUM IDENTIFICATION; CARBON MINERALIZATION; CHEMICAL ANALYSIS; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; ENVIRONMENTAL MONITORING; GRASSLAND; MASS FRAGMENTOGRAPHY; MICROBIAL COMMUNITY; MICROCOSM; MICROWAVE RADIATION; NONHUMAN; POLYMERASE CHAIN REACTION; POPULATION ABUNDANCE; PSEUDOMONAS; SEPARATION TECHNIQUE; SOIL ANALYSIS; SOIL MICROFLORA; SOIL POLLUTION; SOIL PROPERTY; TAXONOMIC IDENTIFICATION;

AGRICULTURAL SOIL; BIOINDICATOR; POLYCYCLIC AROMATIC HYDROCARBON; PSEUDOMONAS; QPCR;

AGRICULTURE; ENVIRONMENTAL MONITORING; GAMMAPROTEOBACTERIA; POLYCYCLIC HYDROCARBONS, AROMATIC; SOIL; SOIL MICROBIOLOGY; SOIL POLLUTANTS;

BACTERIA (MICROORGANISMS); GAMMAPROTEOBACTERIA; PSEUDOMONAS;

EID: 84879222316     PISSN: 02697491     EISSN: 18736424     Source Type: Journal    
DOI: 10.1016/j.envpol.2013.05.040     Document Type: Article

References (35)

1. S. Amellal, A. Boivin, C.P. Ganier, and M. Schiavon High sorption of phenanthrene in agricultural soils Journal Agronomy for Sustainable Development 26 2006 99 106 (Pubitemid 44033103)
2. M. Blanchard, M.J. Teil, E. Guigon, K. Larcher-Tiphagne, D. Ollivon, B. Garban, and M. Chevreuil Persistent toxic substance inputs to the river Seine basin (France) via atmospheric deposition and urban sludge application Science of the Total Environment 375 2007 232 243 (Pubitemid 46431199)
3. M. Bouchez, D. Blanchet, V. Bardin, F. Haeseler, and J.P. Vandecasteele Efficiency of defined strains and of soil consortia in the biodegradation of polycyclic aromatic hydrocarbon (PAH) mixtures Biodegradation 10 1999 429 435
4. J. Cachot, O. Geffard, S. Augagneur, S. Lacroix, K. Le Menach, L. Peluhet, J. Couteau, X. Denier, M.H. Devier, D. Pottier, and H. Budzinski Evidence of genotoxicity related to high PAH content of sediments in the upper part of the Seine estuary (Normandy, France) Aquatic Toxicology 79 2006 257 267 (Pubitemid 44279083)
5. A. Cebron, M.P. Norini, T. Beguiristain, and C. Leyval Real-Time PCR quantification of PAH-ring hydroxylating dioxygenase (PAH-RHDalpha) genes from Gram positive and Gram negative bacteria in soil and sediment samples Journal of Microbiological Methods 73 2008 148 159
6. C.E. Cerniglia Biodegradation of polycyclic aromatic hydrocarbons Biodegradation vol. 3 1992 Springer Netherlands 351 368
7. N.R. Couling, M.G. Towell, and K.T. Semple Biodegradation of PAHs in soil: influence of chemical structure, concentration and multiple amendment Environmental Pollution 158 2010 3411 3420
8. A. De Menezes, N. Clipson, and E. Doyle Comparative metatranscriptomics reveals widespread community responses during phenanthrene degradation in soil Environmental Microbiology 14 2012 2577 2588
9. J. Fismes, C. Perrin-Ganier, P. Empereur-Bissonnet, and J.L. Morel Soil-to-root transfer and translocation of polycyclic aromatic hydrocarbons by vegetables grown on industrial contaminated soils Journal of Environmental Quality 31 2002 1649 1656
10. R.J. Grosser, D. Warshawsky, and J.R. Vestal Indigenous and enhanced mineralization of pyrene, benzo[a]pyrene, and carbazole in soils Applied and Environmental Microbiology 57 1991 3462 3469 (Pubitemid 23396039)
11. N. Grova, C. Feidt, C. Crepineau, C. Laurent, P.E. Lafargue, A. Hachimi, and G. Rychen Detection of polycyclic aromatic hydrocarbon levels in milk collected near potential contamination sources Journal of Agricultural and Food Chemistry 50 2002 4640 4642 (Pubitemid 34823994)
12. H. Hamdi, S. Benzarti, L. Manusadzianas, I. Aoyama, and N. Jedidi Solid-phase bioassays and soil microbial activities to evaluate PAH-spiked soil ecotoxicity after a long-term bioremediation process simulating landfarming Chemosphere 70 2007 135 143 (Pubitemid 350016234)
13. D.A. Heemsbergen, M.P. Berg, M. Loreau, J.R. van Hal, J.H. Faber, and H.A. Verhoef Biodiversity effects on soil processes explained by interspecific functional dissimilarity Science 306 2004 1019 1020 (Pubitemid 39482902)
14. C.O. Jeon, W. Park, P. Padmanabhan, C. DeRito, J.R. Snape, and E.L. Madsen Discovery of a bacterium, with distinctive dioxygenase, that is responsible for in situ biodegradation in contaminated sediment Proceedings of the National Academy of Sciences of the United States of America 100 2003 13591 13596 (Pubitemid 37444785)
15. A.R. Johnsen, L.Y. Wick, and H. Harms Principles of microbial PAH-degradation in soil Environmental Pollution 133 2005 71 84 (Pubitemid 41569171)
16. A.R. Johnsen, A. Winding, U. Karlson, and P. Roslev Linking of microorganisms to phenanthrene metabolism in soil by analysis of (13)C-labeled cell lipids Applied and Environmental Microbiology 68 2002 6106 6113 (Pubitemid 36342446)
17. A.L. Juhasz, and R. Naidu Bioremediation of high molecular weight polycyclic aromatic hydrocarbons: a review of the microbial degradation of benzo a pyrene International Biodeterioration and Biodegradation 45 2000 57 88 (Pubitemid 30629048)
18. B.D. Kottler, and M. Alexander Relationship of properties of polycyclic aromatic hydrocarbons to sequestration in soil Environmental Pollution 113 2001 293 298
19. C. Lors, D. Damidot, J. Ponge, and F. Périé Comparison of a bioremediation process of PAHs in a PAH-contaminated soil at field and laboratory scales Environmental Pollution 165 2012 11 17
20. C. Lors, A. Ryngaery, F. Périé, L. Diels, and D. Damidot Evolution of bacterial community during bioremediation of PAHs in a coal tar contaminated soil Chemosphere 81 2010 1263 1271
21. F. Martin, S. Torelli, D. Le Paslier, A. Barbance, F. Martin-Laurent, D. Bru, R. Geremia, G. Blake, and Y. Jouanneau Betaproteobacteria dominance and diversity shifts in the bacterial community of a PAH-contaminated soil exposed to phenanthrene Environmental Pollution 162 2012 345 353
22. I. Martorell, G. Perello, R. Marti-Cid, V. Castell, J.M. Llobet, and J.L. Domingo Polycyclic aromatic hydrocarbons (PAH) in foods and estimated PAH intake by the population of Catalonia, Spain: temporal trend Environment International 36 2010 424 432
23. A. Motelay-Massei, D. Ollivon, B. Garban, M.J. Teil, M. Blanchard, and M. Chevreuil Distribution and spatial trends of PAHs and PCBs in soils in the Seine River basin, France Chemosphere 55 2004 555 565 (Pubitemid 38314932)
24. A. Motelay-Massei, D. Ollivon, B. Garban, K. Tiphagne-Larcher, I. Zimmerlin, and M. Chevreuil PAHs in the bulk atmospheric deposition of the Seine river basin: source identification and apportionment by ratios, multivariate statistical techniques and scanning electron microscopy Chemosphere 67 2007 312 321 (Pubitemid 46107569)
25. M. Niepceron, F. Portet-Koltalo, C. Merlin, A. Motelay-Massei, S. Barray, and J. Bodilis Both Cycloclasticus spp. and Pseudomonas spp. as PAH-degrading bacteria in the Seine estuary (France) FEMS Microbiology Ecology 71 2010 137 147
26. R. Olsen, and L. Bakken Viability of soil bacteria: optimization of plate-counting technique and comparison between total counts and plate counts within different size groups Microbial Ecology 13 1987 59 74
27. J.J. Peng, C. Cai, M. Qiao, H. Li, and Y.-G. Zhu Dynamic changes in functional gene copy numbers and microbial communities during degradation of pyrene in soils Environmental Pollution 158 2010 2872 2879
28. L. Philippot, S.G. Andersson, T.J. Battin, J.I. Prosser, J.P. Schimel, W.B. Whitman, and S. Hallin The ecological coherence of high bacterial taxonomic ranks Nature Reviews Microbiology 8 2010 523 529
29. D.H. Phillips, and P.L. Grover Polycyclic hydrocarbon activation: bay regions and beyond Drug Metabolism Reviews 26 1994 443 467 (Pubitemid 24171643)
30. D.R. Singleton, S.N. Powell, R. Sangaiah, A. Gold, L.M. Ball, and M.D. Aitken Stable-isotope probing of bacteria capable of degrading salicylate, naphthalene, or phenanthrene in a bioreactor treating contaminated soil Applied and Environmental Microbiology 71 2005 1202 1209 (Pubitemid 40396656)
31. D.R. Singleton, R. Sangaiah, A. Gold, L.M. Ball, and M.D. Aitken Identification and quantification of uncultivated Proteobacteria associated with pyrene degradation in a bioreactor treating PAH-contaminated soil Environmental Microbiology 8 2006 1736 1745 (Pubitemid 44326465)
32. G. Soulas Evidence for the existence of different physiological groups in the microbial community responsible for 2,4-D mineralization in soil Soil Biology & Biochemistry 25 1993 443 449 (Pubitemid 24409554)
33. K.Y. Wang, Y.T. Shen, S.C. Zhang, Y.B. Ye, Q. Shen, J.D. Hu, and X.J. Wang Application of spatial analysis and multivariate analysis techniques in distribution and source study of polycyclic aromatic hydrocarbons in the topsoil of Beijing, China Environmental Geology 56 2009 1041 1050
34. S.R. Wild, and K.C. Jones Organic chemicals entering agricultural soils in sewage sludges: screening for their potential to transfer to crop plants and livestock Science of the Total Environment 119 1992 85 119
35. S.C. Wilson, and K.C. Jones Bioremediation of soil contaminated with polynuclear aromatic hydrocarbons (PAHs): a review Environmental Pollution 81 1993 229 249