Assessing the genetic consequences of flower-harvesting in Rhododendron decorum Franchet (Ericaceae) using microsatellite markers

Biochemical Systematics and Ecology

Volumn 50, Issue , 2013, Pages 296-303

  Wang, Xue qin ^a,b   Huang, Yuan ^a   Long, Chun lin ^a,c  

^a KUNMING INSTITUTE OF BOTANY   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

^c MINZU UNIVERSITY OF CHINA   (China)

Author keywords

Flower harvesting; Genetic variation; Microsatellites; Rhododendron decorum

Indexed keywords

ALLELE; CLUSTER ANALYSIS; EFFECTIVE POPULATION SIZE; FLOWER; GENETIC MARKER; GENETIC VARIATION; GENOTYPE; HARVESTING; SHRUB;

CHINA;

ERICACEAE; RHODODENDRON; RHODODENDRON DECORUM;

EID: 84879202614     PISSN: 03051978     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bse.2013.04.009     Document Type: Article

References (42)

1. Aguilar R., Quesada M., Ashworth L., Herrerias-Diego Y., Lobo J. Genetic consequences of habitat fragmentation in plant populations: susceptible signals in plant traits and methodological approaches. Mol. Ecol. 2008, 17:5177-5188.
2. Bacles C.F.E., Lowe A.J., Ennos R.A. Effective seed dispersal across a fragmented landscape. Science 2006, 311:628.
3. Bawa K.S., Kress W.J., Nadkarni N.M., Lele S. Beyond paradise-Meeting the challenges in tropical biology in the 21st century. Biotropica 2004, 36:437-446.
4. Biedenkopf S., Ammer C., Muller-Starck G. Genetic aspects of seed harvests for the artificial regeneration of wild service tree (Sorbus torminalis [L.] crantz). New Forests 2007, 33:1-12.
5. Bruni I., De Mattia F., Labra M., Grassi F., Fluch S., Berenyi M., Ferrari C. Genetic variability of relict Rhododendron ferrugineum L. populations in the Northern Apennines with some inferences for a conservation strategy. Plant Biosyst. 2012, 146:24-32.
6. Dieringer D., Schlotterer C. MICROSATELLITE ANALYSER (MSA): a platform independent analysis tool for large microsatellite data sets. Mol. Ecol. Notes 2003, 3:167-169.
7. Du X.B., Zhang C.L., Yan S.M., Wang X.Z. Toxic chemical constituents of Rhododendron decorum. Chin. Tradit. Herbal. Drugs 1992, 23:456-458.
8. Earl D.A., Vonholdt B.M. STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method. Conserv. Genet. Resour. 2012, 4:359-361.
9. Evanno G., Regnaut S., Goudet J. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 2005, 14:2611-2620.
10. Excoffier L., Laval G., Schneider S. Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evol. Bioinform. 2005, 1:47-50.
11. Excoffier L., Smouse P.E., Quattro J.M. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application of human mitochondrial DNA restriction data. Genetics 1992, 131:479-491.
12. Fang M.Y., Fang R.Z., He M.Y., Hu L.Z., Yang H.B., Qin H.N., Min T.L., Chamberlain D.F., Stevens P., Wallace G.D., Anderberg A. Rhododendron (Ericaceae). Flora of China 2005, vol. 14:332. Science Press and Missouri Botanical Garden Press, Beijing and St. Louis.
13. Felsenstein J. PHYLIP: Phylogeny inference package. Cladistics 1989, 5:164-166.
14. Gaoue O.G., Ticktin T. Patterns of harvesting foliage and bark from the multipurpose tree Khaya senegalensis in Benin: Variation across ecological regions and its impacts on population structure. Biol. Conserv. 2007, 137:424-436.
15. Goudet J. FSTAT, a Program to Estimate and Test Gene Diversities and Fixation Indices (Version 2.9.3) 2001, http://www.unil.ch/izea/softwares/FSTat.html.
16. Hamrick J.L., Godt M.J.W., Sherman-Broyles S.L. Factors influencing levels of genetic diversity in woody plant species. New Forests 1992, 6:95-124.
17. Hamrick J.L., Nason J.D. Gene flow in forest trees. Forest Conservation Genetics 2000, 81-90. CSIRO Publishing, Collingwood, Australia. A. Young, D. Boshier, T. Boyle (Eds.).
18. Jakobsson M., Rosenberg N.A. CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 2007, 23:1801-1806.
19. Kalinowski S.T. HP-RARE 1.0: a computer program for performing rarefaction on measures of allelic richness. Mol. Ecol. Notes 2005, 5:187-189.
20. Liu Y.F., Xing M., Zhao W., Fan R.J., Luo S., Chen X. Genetic diversity analysis of Rhododendron aureum Georgi (Ericaceae) located on Changbai Mountain using ISSR and RAPD markers. Plant Syst. Evol. 2012, 298:921-930.
21. Liu Y.T. Flower eating culture of Yunnan minorities. Zhi wu za zhi 1997, 5:14-15.
22. Mantel N. The detection of disease clustering and a generalized regression approach. Cancer. Res. 1967, 27:209-220.
23. Milligan B. Plant DNA isolation. A practical approach. Molecular Genetic Analysis of Populations 1992, IRL Press, Oxford, UK. A.R. Hoelzel (Ed.).
24. Morgante M., Hanafey M., Powell W. Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes. Nature Genet. 2002, 30:194-200.
25. Naito K., Isagi Y., Kameyama Y., Nakagoshi N. Population structures in Rhododendron metternichii var. hondoense assessed with microsatellites and their implication for conservation. J. Plant. Res. 1999, 112:405-412.
26. Nei M. Molecular Evolutionary Genetics 1987, Columbia University Press, New York, USA.
27. Peakall R., Smouse P.E. GENALEX 6: genetic analysis in excel. Population genetic software for teaching and research. Mol. Ecol. Notes 2006, 6:288-295.
28. Peel D., Ovenden J.R., Peel S.L. NeEstimator: Software for Estimating Effective Population Size (Version 1.3) 2004, Queensland Government, Department of Primary Industries and Fisheries. http://www.daff.qld.gov.au/28_6908.htm.
29. Petit R.J., El Mousadik A., Pons O. Identifying populations for conservation on the basis of genetic markers. Conserv. Biol. 1998, 12:844-855.
30. Powell W., Machray G.C., Provan J. Polymorphism revealed by simple sequence repeats. Trends. Plant. Sci. 1996, 1:215-222.
31. Pritchard J.K., Stephens M., Donnelly P. Inference of population structure using multilocus genotype data. Genetics 2000, 155:945-959.
32. Pritchard J.K., Wen X., Falush D. STRUCTURE Ver. 2.3 2009, University of Chicago, Chicago, USA. http://pritch.bsd.uchicago.edu/.
33. Rajora O.P., Rahman M.H., Buchert G.P., Dancik B.P. Microsatellite DNA analysis of genetic effects of harvesting in old-growth eastern white pine (Pinus strobus) in Ontario, Canada. Mol. Ecol. 2000, 9:339-348.
34. Rosenberg N.A. DISTRUCT: a program for the graphical display of population structure. Mol. Ecol. Notes 2004, 4:137-138.
35. Rousset F. Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics 1997, 145:1219-1228.
36. Schumann K., Wittig R., Thiombiano A., Becker U., Hahn K. Impact of land-use type and bark- and leaf-harvesting on population structure and fruit production of the baobab tree (Adansonia digitata L.) in a semi-arid savanna, West Africa. For. Ecol. Manage. 2010, 260:2035-2044.
37. Ticktin T. The ecological implications of harvesting non-timber forest products. J. Appl. Ecol. 2004, 41:11-21.
38. Van Oosterhout C., Hutchinson W.F., Wills D.P.M., Shipley P. MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol. Ecol. Notes 2004, 4:535-538.
39. Wang X.Q., Huang Y., Long C.L. Isolation and characterization of twenty-four microsatellite loci for Rhododendron decorum Franch. (Ericaceae). Hortscience 2009, 44:2028-2030.
40. Waples R.S., Do C. LDNE: a program for estimating effective population size from data on linkage disequilibrium. Mol. Ecol. Resour. 2008, 8:753-756.
41. Yong J., Chong L.S. Rhododendrons of China 1980, Binford & Mort, Oregon, Portland.
42. Zhang J.L., Zhang C.Q., Wu Z.K., Qiao Q. The potential roles of interspecific pollination in natural hybridization of Rhododendron species in Yunnan, China. Sheng Wu Duo Yang Xing 2007, 15:658-665.