Genotyping of gastroenteric viruses in hospitalised children: First report of norovirus GII.21 in Brazil

Memorias do Instituto Oswaldo Cruz

Volumn 107, Issue 8, 2012, Pages 1064-1067

  Ferreira, Mônica Simões Rocha ^a   Garcia, Rita de Casia Cubel ^b   Xavier, Maria da Penha Trindade Pinheiro ^a   Ribeiro, Rubia Lane ^b   Assis, Rosane Maria ^a   Mota, Maria do Céu MS ^c   Leite, José Paulo Gagliardi ^a   Miagostovich, Marize Pereira ^a   de Oliveira, Solange Artimos ^d  

^a INSTITUTO OSWALDO CRUZ   (Brazil)

^b Instituto Biomédico   (Brazil)

^c Getulio Vargas Filho Hospital   (Brazil)

^d FLUMINENSE FEDERAL UNIVERSITY   (Brazil)

Author keywords

Gastroenteric viruses; Genotyping; Nosocomial infections

Indexed keywords

ACUTE DISEASE; ARTICLE; ASTROVIRUS; BRAZIL; FECES; FEMALE; GASTROENTERITIS; GENETICS; GENOTYPE; HOSPITALIZATION; HUMAN; INFANT; ISOLATION AND PURIFICATION; MALE; NEWBORN; NOROVIRUS; RETROSPECTIVE STUDY; ROTAVIRUS; SEASON; VIROLOGY;

ACUTE DISEASE; BRAZIL; FECES; FEMALE; GASTROENTERITIS; GENOTYPE; HOSPITALIZATION; HUMANS; INFANT; INFANT, NEWBORN; MALE; MAMASTROVIRUS; NOROVIRUS; RETROSPECTIVE STUDIES; ROTAVIRUS; SEASONS;

NOROVIRUS; ROTAVIRUS A;

EID: 84871756546     PISSN: 00740276     EISSN: 16788060     Source Type: Journal    
DOI: 10.1590/S0074-02762012000800017     Document Type: Article

References (26)

1. Araújo IT, Fialho AM, Assis RM, Rocha M, Galvão M, Cruz MC, Ferreira, MSR, Leite JPG. 2002. Rotavirus strain diversity in Rio de Janeiro, Brazil: characterization of VP4 and VP7 genotypes in hospitalized children. J Trop Pediatr 48: 214-218.
2. Barnes GL, Uren E, Bishop RF 1998. Etiology of acute gastroenteritis in hospitalized children in Australia, from April 1980 to March 1993. J Clin Microbiol 36: 133-138.
3. Beuret C, Kohler D, Baumgartner A, Lüthi T 2002. Norwalk-like virus sequences in mineral waters: one-year monitoring of three brands. Appl Environ Microbiol 68: 1925-1931.
4. Bittencourt JAF, Arbo E, Malysz AS 2000. Seasonal and age distribution of rotavirus infection in Porto Alegre, Brazil. Braz J Infect Dis 4: 279-283.
5. Bruijning-Verhagen P, Quach C, Bonten M 2012. Nosocomial rotavirus infections: a meta-analysis. Pediatrics 129: e1011.
6. Carvalho-Costa FA, Assis RM, Fialho AM, Bóia MN, Alves DPD, Martins CMMA, Leite JPG 2006. Detection and molecular characterization of group A rotavirus from hospitalized children in Rio de Janeiro, Brazil, 2004. Mem Inst Oswaldo Cruz 101: 291-294.
7. Carvalho-Costa FA, Volotão EM, Assis RM, Fialho AM, Andrade JS, Rocha LN, Tort LF, da Silva MF, Gómez MM, de Souza PM, Leite JP 2011. Laboratory-based rotavirus surveillance during the introduction of a vaccination program, Brazil, 2005-2009. Pediatr Infect Dis J 30: 35-41.
8. Chhabra P, Walimbe AM, Chitambar SD 2010. Molecular characterization on three novel intergenotype norovirus GII recombinant strains from western India. Virus Res 147: 242-246.
9. Das BK, Gentsch JR, Cicirello HG, Woods PA, Gupta A, Ramachandran M, Kumar R, Bhan MK, Glass RI 1994. Characterization of rotavirus strains from newborns in New Delhi, India. J Clin Microbiol 32: 1820-1822.
10. Ferreira MSR, Victoria M, Carvalho-Costa FA, Vieira CB, Xavier MPTP, Fioretti JM, Andrade J, Volotão EM, Rocha M, Leite JPG, Miagostovich MP 2010. Surveillance of norovirus infections in the state of Rio de Janeiro, Brazil 2005-2008. J Med Virol 82: 1442-1448.
11. Gabbay YB, da Luz CRNE, Costa IV, Cavalcante-Pepino EL, Sousa MS, Oliveira KK, Wanzeller ALM, Mascarenhas JDP, Leite JPG, Linhares AC 2005. Prevalence and genetic diversity of astroviruses in children with and without diarrhea in São Luís, Maranhão, Brazil. Mem Inst Oswaldo Cruz 100: 709-714.
12. Gentsch JR, Glass RI, Woods P, Gouvea V, Gorziglia M, Flores J, Das BK, Bhan MK 1992. Identification of group A rotavirus gene 4 types by polymerase chain reaction assay. J Clin Microbiol 30: 1365-1373.
13. Leite JPG, Alfieri AA, Woods PA, Glass RI, Gentsch JR 1996. Rotavirus G and P types circulating in Brazil: Characterization by RT-PCR, probe hybridization and sequence analysis. Arch Virol 912: 2365-2374.
14. Leite JPG, Carvalho-Costa FA, Linhares AC 2008. Group A rotavirus genotypes and the ongoing Brazilian experience: A Review. Mem Inst Oswaldo Cruz 103: 745-753.
15. Moreno-Espinosa S, Farkas T, Jiang X 2004. Human caliciviruses and pediatric gastroenteritis. Semin Pediatr Infect Dis 15: 237-245.
16. Nguyen TV, Le Van P, Le Huy C, Weintraub A 2004. Diarrhea caused by rotavirus in children less than 5 years of age in Hanoi, Vietnam. J Clin Microbiol 42: 5745-5750.
17. Noel JS, Lee TW, Kurtz JB, Glass RI, Monroe SS 1995. Typing of human astroviruses from clinical isolates by enzyme immunoassay and nucleotide sequencing. J Clin Microbiol 33: 797-801.
18. Patel MM, Widdowson MA, Glass RI, Akazawa K, Vinjé J, Parashar UD 2008. Systematic literature review of role of noroviruses in sporadic gastroenteritis. Emerg Infect Dis 14: 1224-1231.
19. Pereira HG, Azeredo RS, Leite JPG, Barth OM, Sutmoller F, de Farias V, Vidal MNP 1983. Comparison of polyacrylamide gel eletrophoresis (PAGE), immuno-electron microscopy (IEM) and enzyme immunoassay (EIA) for the rapid diagnosis of rotavirus infection in children. Mem Inst Oswaldo Cruz 78: 483-490.
20. Siebenga JJ, Vennema H, Zheng DP, Vinjé J, Lee BE, Pang XL, Ho EC, Lim W, Choudekar A, Broor S, Halperin T, Rasool NB, Hewitt J, Greening GE, Jin M, Duan ZJ, Lucero Y, O'Ryan M, Hoehne M, Schreier E, Ratcliff RM, White PA, Iritani N, Reuter G, Koopmans M 2009. Norovirus illness is a global problem: emergence and spread of norovirus GII.4 variants, 20012007. J Infect Dis 200: 802-812.
21. Tran A, Talmud D, Lejeune B, Jovenin N, Renois F, Payan C, Leveque N, Andreoletti L 2010. Prevalence of rotavirus, adenovirus, norovirus, and astrovirus infections and coinfections among hospitalized children in northern France. J Clin Microbiol 48: 1943-1946.
22. Vaz MGS, Domingues ALS, Moreno M, Câmara FP 1999. Molecular epidemiology of group A rotavirus causing acute diarrhea in infants and young children in Rio de Janeiro, Brazil, 1997-1998. Braz J Infect Dis 3: 156-162.
23. Victoria M, Carvalho-Costa FA, Heinemann MB, Leite JP, Miagostovich MP 2007. Genotypes and molecular epidemiology of human astroviruses in hospitalized children with acute gastroenteritis in Rio de Janeiro, Brazil. J Med Virol 79: 939-944.
24. Vinjé J, Hamidjaja RA, Sobsey MD 2004. Development and application of a capsid VP1 (region D) based reverse transcription PCR assay for genotyping of genogroup I and II noroviruses. J Virol Methods 116: 109-117.
25. Wilhelmi I, Roman E, Sanchez-Fauquier A 2003. Viruses causing gastroenteritis. Clin Microbiol Infect 9: 247-252.
26. Zheng DP, Widdowson MA, Glass RI, Vinjé J 2010. Molecular epidemiology of genogroup II-genotype 4 noroviruses in the United States between 1994 and 2006. J Clin Microbiol 48: 168-177.