DNA interactions in crowded nanopores

Nano Letters

Volumn 13, Issue 6, 2013, Pages 2798-2802

  Laohakunakorn, Nadanai ^a   Ghosal, Sandip ^b   Otto, Oliver ^c   Misiunas, Karolis ^a   Keyser, Ulrich F ^a  

^a UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^b NORTHWESTERN UNIVERSITY   (United States)

^c DRESDEN UNIVERSITY OF TECHNOLOGY   (Germany)

Author keywords

crowding; DNA; hydrodynamic interactions; Nanopore; optical tweezers

Indexed keywords

CROWDING; DNA INTERACTION; ELECTROOSMOTIC FLOW; GEL ELECTROPHORESIS; HIGH SALT CONCENTRATION; HYDRODYNAMIC INTERACTION; SELF-INTERACTIONS; TUG OF WAR (TOW);

ELECTROPHORESIS; HYDRODYNAMICS; MEAN FIELD THEORY; MOLECULES; NANOPORES; OPTICAL TWEEZERS;

DNA;

DNA;

ARTICLE; CHEMISTRY; NANOPORE; OPTICAL TWEEZERS;

DNA; NANOPORES; OPTICAL TWEEZERS;

EID: 84879083626     PISSN: 15306984     EISSN: 15306992     Source Type: Journal    
DOI: 10.1021/nl401050m     Document Type: Article

References (22)

1. Li, J.; Stein, D.; McMullan, C.; Branton, D.; Aziz, M. J.; Golovchenko, J. A. Ion-beam sculpting at nanometre length scales Nature 2001, 412, 166-169
2. Dekker, C. Solid-state nanopores Nat. Nanotechnol. 2007, 2, 209-215
3. Keyser, U. F.; Koeleman, B. N.; Van Dorp, S.; Krapf, D.; Smeets, R. M. M.; Lemay, S. G.; Dekker, N. H.; Dekker, C. Direct force measurements on DNA in a solid-state nanopore Nat. Phys. 2006, 2, 473-477
4. Trepagnier, E. H.; Radenovic, A.; Sivak, D.; Geissler, P.; Liphardt, J. Controlling DNA capture and propagation through artificial nanopores Nano Lett. 2007, 7, 2824-2830
5. Spiering, A.; Getfert, G.; Sischka, A.; Reimann, P.; Anselmetti, D. Nanopore translocation dynamics of a single DNA-bound protein Nano Lett. 2011, 11, 2978-2982
6. Keyser, U. F. Controlling molecular transport through nanopores J. R. Soc. Interface 2011, 8, 1369-1378
7. Otto, O.; Steinbock, L.; Wong, D.; Gornall, J.; Keyser, U. Note: Direct force and ionic-current measurements on DNA in a nanocapillary Rev. Sci. Instrum. 2011, 82, 086102
8. Ghosal, S. Electrophoresis of a polyelectrolyte through a nanopore Phys. Rev. E 2006, 74, 041901
9. Ghosal, S. Electrokinetic-flow-induced viscous drag on a tethered DNA inside a nanopore Phys. Rev. E 2007, 76, 061916
10. Ghosal, S. Effect of salt concentration on the electrophoretic speed of a polyelectrolyte through a nanopore Phys. Rev. Lett. 2007, 98, 238104
11. Luan, B.; Aksimentiev, A. Electro-osmotic screening of the DNA charge in a nanopore Phys. Rev. E 2010, 78, 021912
12. Van Dorp, S.; Keyser, U.; Dekker, N.; Dekker, C.; Lemay, S. Origin of the electrophoretic force on DNA in solid-state nanopores Nat. Phys. 2009, 5, 347-351
13. Keyser, U.; Van Dorp, S.; Lemay, S. Tether forces in DNA electrophoresis Chem. Soc. Rev. 2010, 39, 939-947
14. Schoch, R. B.; Han, J.; Renaud, P. Transport phenomena in nanofluidics Rev. Mod. Phys. 2008, 80, 839-883
15. Dorfman, K. D. DNA electrophoresis in microfabricated devices Rev. Mod. Phys. 2010, 82, 2903-2947
16. Long, D.; Vivoy, J.; Ajdari, A. Simultaneous action of electric fields and nonelectric forces on a polyelectrolyte: motion and deformation Phys. Rev. Lett. 1996, 76, 3858-3861
17. Long, D.; Ajdari, A. A note on the screening of hydrodynamic interactions, in electrophoresis, and in porous media Eur. Phys. J. E 2001, 4, 29-32
18. Shendruk, T.; Hickey, O.; Slater, G.; Harden, J. Electrophoresis: When hydrodynamics matter Curr. Opin. Colloid Interface Sci. 2012, 17, 74-82
19. Steinbock, L.; Otto, O.; Chimerel, C.; Gornall, J.; Keyser, U. Detection DNA folding with nanocapillaries Nano Lett. 2010, 10, 2493-2497
20. Li, J.; Gershow, M.; Stein, D.; Brandin, E.; Golovchenko, J. A. DNA molecules and configurations in a solid-state nanopore microscope Nat. Mater. 2003, 2, 611-615
21. Storm, A. J.; Storm, C.; Chen, J.; Zandbergen, H.; Joanny, J. F.; Dekker, C. Fast DNA translocation through a solid-state nanopore Nano Lett. 2005, 5, 1193-1197
22. Fologea, D.; Uplinger, J.; Thomas, B.; McNabb, D. S.; Li, J. Slowing DNA translocation in a solid-state nanopore Nano Lett. 2005, 5, 1734-1737