메뉴 건너뛰기




Volumn 5, Issue 6, 2013, Pages

The emergence of top-down proteomics in clinical research

Author keywords

[No Author keywords available]

Indexed keywords

PEPTIDE;

EID: 84879075349     PISSN: None     EISSN: 1756994X     Source Type: Journal    
DOI: 10.1186/gm457     Document Type: Article
Times cited : (81)

References (41)
  • 1
    • 84871391969 scopus 로고    scopus 로고
    • Promise of personalized omics to precision medicine.
    • 10.1002/wsbm.1198, 23184638
    • Chen R, Snyder M. Promise of personalized omics to precision medicine. Wiley Interdiscip Rev Syst Biol Med 2013, 5:73-82. 10.1002/wsbm.1198, 23184638.
    • (2013) Wiley Interdiscip Rev Syst Biol Med , vol.5 , pp. 73-82
    • Chen, R.1    Snyder, M.2
  • 2
    • 84856524835 scopus 로고    scopus 로고
    • Proteomics for biomedicine: a half-completed journey.
    • 10.1002/emmm.201100198, 3376839, 22278912
    • Mann M. Proteomics for biomedicine: a half-completed journey. EMBO Mol Med 2012, 4:75-77. 10.1002/emmm.201100198, 3376839, 22278912.
    • (2012) EMBO Mol Med , vol.4 , pp. 75-77
    • Mann, M.1
  • 3
    • 77957741554 scopus 로고    scopus 로고
    • Plasma renin activity by LC-MS/MS: development of a prototypical clinical assay reveals a subpopulation of human plasma samples with substantial peptidase activity.
    • 10.1373/clinchem.2010.146449, 20739638
    • Bystrom CE, Salameh W, Reitz R, Clarke NJ. Plasma renin activity by LC-MS/MS: development of a prototypical clinical assay reveals a subpopulation of human plasma samples with substantial peptidase activity. Clin Chem 2010, 56:1561-1569. 10.1373/clinchem.2010.146449, 20739638.
    • (2010) Clin Chem , vol.56 , pp. 1561-1569
    • Bystrom, C.E.1    Salameh, W.2    Reitz, R.3    Clarke, N.J.4
  • 4
    • 84871860708 scopus 로고    scopus 로고
    • Quantification of the N-glycosylated secretome by super-SILAC during breast cancer progression and in human blood samples.
    • 10.1074/mcp.M112.023614, 3536897, 23090970
    • Boersema PJ, Geiger T, Wisniewski JR, Mann M. Quantification of the N-glycosylated secretome by super-SILAC during breast cancer progression and in human blood samples. Mol Cell Proteomics 2013, 12:158-171. 10.1074/mcp.M112.023614, 3536897, 23090970.
    • (2013) Mol Cell Proteomics , vol.12 , pp. 158-171
    • Boersema, P.J.1    Geiger, T.2    Wisniewski, J.R.3    Mann, M.4
  • 5
    • 84876314836 scopus 로고    scopus 로고
    • Proteomic workflow for analysis of archival formalin-fixed and paraffin-embedded clinical samples to a depth of 10 000 proteins.
    • 10.1002/prca.201200046, 23090905
    • Wisniewski JR, Dus K, Mann M. Proteomic workflow for analysis of archival formalin-fixed and paraffin-embedded clinical samples to a depth of 10 000 proteins. Proteomics Clin Appl 2013, 7:225-233. 10.1002/prca.201200046, 23090905.
    • (2013) Proteomics Clin Appl , vol.7 , pp. 225-233
    • Wisniewski, J.R.1    Dus, K.2    Mann, M.3
  • 7
    • 84873529615 scopus 로고    scopus 로고
    • Weighing in on autoimmune disease: big data tip the scale.
    • 10.1038/nm.3087, 23389608
    • Dendrou CA, Bell JI, Fugger L. Weighing in on autoimmune disease: big data tip the scale. Nat Med 2013, 19:138-139. 10.1038/nm.3087, 23389608.
    • (2013) Nat Med , vol.19 , pp. 138-139
    • Dendrou, C.A.1    Bell, J.I.2    Fugger, L.3
  • 8
    • 33645721632 scopus 로고    scopus 로고
    • Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins.
    • Anderson L, Hunter CL. Quantitative mass spectrometric multiple reaction monitoring assays for major plasma proteins. Mol Cell Proteomics 2006, 5:573-588.
    • (2006) Mol Cell Proteomics , vol.5 , pp. 573-588
    • Anderson, L.1    Hunter, C.L.2
  • 9
    • 84869030990 scopus 로고    scopus 로고
    • Spinning up mass spectrometry for whole protein complexes.
    • 10.1038/nmeth.2216, 23132117
    • Kelleher NL. Spinning up mass spectrometry for whole protein complexes. Nat Methods 2012, 9:1065-1066. 10.1038/nmeth.2216, 23132117.
    • (2012) Nat Methods , vol.9 , pp. 1065-1066
    • Kelleher, N.L.1
  • 10
    • 0001644020 scopus 로고    scopus 로고
    • The human plasma proteome: history, character, and diagnostic prospects.
    • 10.1074/mcp.R200007-MCP200, 12488461
    • Anderson NL, Anderson NG. The human plasma proteome: history, character, and diagnostic prospects. Mol Cell Proteomics 2002, 1:845-867. 10.1074/mcp.R200007-MCP200, 12488461.
    • (2002) Mol Cell Proteomics , vol.1 , pp. 845-867
    • Anderson, N.L.1    Anderson, N.G.2
  • 11
    • 33846665857 scopus 로고    scopus 로고
    • Antibody-based enrichment of peptides on magnetic beads for mass-spectrometry-based quantification of serum biomarkers.
    • 10.1016/j.ab.2006.12.023, 1852426, 17241609
    • Whiteaker JR, Zhao L, Zhang HY, Feng LC, Piening BD, Anderson L, Paulovich AG. Antibody-based enrichment of peptides on magnetic beads for mass-spectrometry-based quantification of serum biomarkers. Anal Biochem 2007, 362:44-54. 10.1016/j.ab.2006.12.023, 1852426, 17241609.
    • (2007) Anal Biochem , vol.362 , pp. 44-54
    • Whiteaker, J.R.1    Zhao, L.2    Zhang, H.Y.3    Feng, L.C.4    Piening, B.D.5    Anderson, L.6    Paulovich, A.G.7
  • 13
    • 38349068918 scopus 로고    scopus 로고
    • Quantitative, multiplexed assays for low abundance proteins in plasma by targeted mass spectrometry and stable isotope dilution.
    • 10.1074/mcp.M700354-MCP200, 2435059, 17939991
    • Keshishian H, Addona T, Burgess M, Kuhn E, Carr SA. Quantitative, multiplexed assays for low abundance proteins in plasma by targeted mass spectrometry and stable isotope dilution. Mol Cell Proteomics 2007, 6:2212-2229. 10.1074/mcp.M700354-MCP200, 2435059, 17939991.
    • (2007) Mol Cell Proteomics , vol.6 , pp. 2212-2229
    • Keshishian, H.1    Addona, T.2    Burgess, M.3    Kuhn, E.4    Carr, S.A.5
  • 14
    • 67650035169 scopus 로고    scopus 로고
    • A new season for cardiac troponin assays: it's time to keep a scorecard.
    • 10.1373/clinchem.2009.128363, 19478023
    • Apple FS. A new season for cardiac troponin assays: it's time to keep a scorecard. Clin Chem 2009, 55:1303-1306. 10.1373/clinchem.2009.128363, 19478023.
    • (2009) Clin Chem , vol.55 , pp. 1303-1306
    • Apple, F.S.1
  • 15
    • 84861580651 scopus 로고    scopus 로고
    • Clinical evaluation of a novel method for the measurement of prostate-specific antigen, AccuPSA™, as a predictor of 5-year biochemical recurrence-free survival after radical prostatectomy: results of a pilot study.
    • 10.1111/j.1464-410X.2011.10568.x, 21992499
    • Lepor H, Cheli CD, Thiel RP, Taneja SS, Laze J, Chan DW, Sokoll LJ, Mangold L, Partin AW. Clinical evaluation of a novel method for the measurement of prostate-specific antigen, AccuPSA™, as a predictor of 5-year biochemical recurrence-free survival after radical prostatectomy: results of a pilot study. BJU Int 2012, 109:1770-1775. 10.1111/j.1464-410X.2011.10568.x, 21992499.
    • (2012) BJU Int , vol.109 , pp. 1770-1775
    • Lepor, H.1    Cheli, C.D.2    Thiel, R.P.3    Taneja, S.S.4    Laze, J.5    Chan, D.W.6    Sokoll, L.J.7    Mangold, L.8    Partin, A.W.9
  • 16
    • 55349095003 scopus 로고    scopus 로고
    • Protein quantitation through targeted mass spectrometry: the way out of biomarker purgatory?
    • Carr SA, Anderson L. Protein quantitation through targeted mass spectrometry: the way out of biomarker purgatory?. Clinical Chem 2008, 54:1749-1752.
    • (2008) Clinical Chem , vol.54 , pp. 1749-1752
    • Carr, S.A.1    Anderson, L.2
  • 19
    • 84870792079 scopus 로고    scopus 로고
    • Perceiving the epigenetic landscape through histone readers.
    • 10.1038/nsmb.2436, 3645987, 23211769
    • Musselman CA, Lalonde ME, Côté J, Kutateladze TG. Perceiving the epigenetic landscape through histone readers. Nat Struct Mol Biol 2012, 19:1218-1227. 10.1038/nsmb.2436, 3645987, 23211769.
    • (2012) Nat Struct Mol Biol , vol.19 , pp. 1218-1227
    • Musselman, C.A.1    Lalonde, M.E.2    Côté, J.3    Kutateladze, T.G.4
  • 20
    • 84874625369 scopus 로고    scopus 로고
    • Proteoform: a single term describing protein complexity.
    • 10.1038/nmeth.2369, 23443629, Consortium for Top Down Proteomics
    • Smith LM, Kelleher NL, Consortium for Top Down Proteomics Proteoform: a single term describing protein complexity. Nat Methods 2013, 10:186-187. 10.1038/nmeth.2369, 23443629, Consortium for Top Down Proteomics.
    • (2013) Nat Methods , vol.10 , pp. 186-187
    • Smith, L.M.1    Kelleher, N.L.2
  • 21
    • 0016711037 scopus 로고
    • High resolution two-dimensional electrophoresis of proteins.
    • 2874754, 236308
    • O'Farrell PH. High resolution two-dimensional electrophoresis of proteins. J Biol Chem 1975, 250:4007-4021. 2874754, 236308.
    • (1975) J Biol Chem , vol.250 , pp. 4007-4021
    • O'Farrell, P.H.1
  • 22
    • 0343376097 scopus 로고    scopus 로고
    • Difference gel electrophoresis: a single gel method for detecting changes in protein extracts.
    • 10.1002/elps.1150181133, 9420172
    • Unlu M, Morgan ME, Minden JS. Difference gel electrophoresis: a single gel method for detecting changes in protein extracts. Electrophoresis 1997, 18:2071-2077. 10.1002/elps.1150181133, 9420172.
    • (1997) Electrophoresis , vol.18 , pp. 2071-2077
    • Unlu, M.1    Morgan, M.E.2    Minden, J.S.3
  • 23
    • 33846563430 scopus 로고    scopus 로고
    • Elucidation of a protein signature discriminating six common types of adenocarcinoma.
    • 10.1002/ijc.22041, 17131332
    • Bloom GC, Eschrich S, Zhou JX, Coppola D, Yeatman TJ. Elucidation of a protein signature discriminating six common types of adenocarcinoma. Int J Cancer 2007, 120:769-775. 10.1002/ijc.22041, 17131332.
    • (2007) Int J Cancer , vol.120 , pp. 769-775
    • Bloom, G.C.1    Eschrich, S.2    Zhou, J.X.3    Coppola, D.4    Yeatman, T.J.5
  • 25
    • 0034662907 scopus 로고    scopus 로고
    • Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology.
    • 10.1073/pnas.160270797, 16874, 10920198
    • Gygi SP, Corthals GL, Zhang Y, Rochon Y, Aebersold R. Evaluation of two-dimensional gel electrophoresis-based proteome analysis technology. Proc Natl Acad Sci USA 2000, 97:9390-9395. 10.1073/pnas.160270797, 16874, 10920198.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 9390-9395
    • Gygi, S.P.1    Corthals, G.L.2    Zhang, Y.3    Rochon, Y.4    Aebersold, R.5
  • 26
    • 0034786119 scopus 로고    scopus 로고
    • An evaluation of the use of two-dimensional gel electrophoresis in proteomics.
    • 10.1016/S1389-0344(01)00095-8, 11911086
    • Ong SE, Pandey A. An evaluation of the use of two-dimensional gel electrophoresis in proteomics. Biomol Eng 2001, 18:195-205. 10.1016/S1389-0344(01)00095-8, 11911086.
    • (2001) Biomol Eng , vol.18 , pp. 195-205
    • Ong, S.E.1    Pandey, A.2
  • 27
    • 84855369410 scopus 로고    scopus 로고
    • Robust analysis of the yeast proteome under 50 kDa by molecular-mass-based fractionation and top-down mass spectrometry.
    • 10.1021/ac202384v, 3262231, 22103811
    • Kellie JF, Catherman AD, Durbin KR, Tran JC, Tipton JD, Norris JL, Witkowski CE, Thomas PM, Kelleher NL. Robust analysis of the yeast proteome under 50 kDa by molecular-mass-based fractionation and top-down mass spectrometry. Anal Chem 2012, 84:209-215. 10.1021/ac202384v, 3262231, 22103811.
    • (2012) Anal Chem , vol.84 , pp. 209-215
    • Kellie, J.F.1    Catherman, A.D.2    Durbin, K.R.3    Tran, J.C.4    Tipton, J.D.5    Norris, J.L.6    Witkowski, C.E.7    Thomas, P.M.8    Kelleher, N.L.9
  • 31
    • 0042868833 scopus 로고    scopus 로고
    • The vision for a new diagnostic paradigm.
    • 10.1373/49.8.1276, 12881442
    • Petricoin E, Liotta LA. The vision for a new diagnostic paradigm. Clin Chem 2003, 49:1276-1278. 10.1373/49.8.1276, 12881442.
    • (2003) Clin Chem , vol.49 , pp. 1276-1278
    • Petricoin, E.1    Liotta, L.A.2
  • 32
    • 77952035951 scopus 로고    scopus 로고
    • Molecular analysis of tumor margins by MALDI mass spectrometry in renal carcinoma.
    • 10.1021/pr900936z, 2866033, 20141219
    • Oppenheimer SR, Mi D, Sanders ME, Caprioli RM. Molecular analysis of tumor margins by MALDI mass spectrometry in renal carcinoma. J Proteome Res 2010, 9:2182-2190. 10.1021/pr900936z, 2866033, 20141219.
    • (2010) J Proteome Res , vol.9 , pp. 2182-2190
    • Oppenheimer, S.R.1    Mi, D.2    Sanders, M.E.3    Caprioli, R.M.4
  • 34
    • 84862917688 scopus 로고    scopus 로고
    • Augmented phosphorylation of cardiac troponin I in hypertensive heart failure.
    • 10.1074/jbc.M111.293258, 3256890, 22052912
    • Dong X, Sumandea CA, Chen YC, Garcia-Cazarin ML, Zhang J, Balke CW, Sumandea MP, Ge Y. Augmented phosphorylation of cardiac troponin I in hypertensive heart failure. J Biol Chem 2012, 287:848-857. 10.1074/jbc.M111.293258, 3256890, 22052912.
    • (2012) J Biol Chem , vol.287 , pp. 848-857
    • Dong, X.1    Sumandea, C.A.2    Chen, Y.C.3    Garcia-Cazarin, M.L.4    Zhang, J.5    Balke, C.W.6    Sumandea, M.P.7    Ge, Y.8
  • 35
    • 77952366352 scopus 로고    scopus 로고
    • Quantitative analysis of intact apolipoproteins in human HDL by top-down differential mass spectrometry.
    • 10.1073/pnas.0910776107, 2867874, 20388904
    • Mazur MT, Cardasis HL, Spellman DS, Liaw A, Yates NA, Hendrickson RC. Quantitative analysis of intact apolipoproteins in human HDL by top-down differential mass spectrometry. Proc Natl Acad Sci USA 2010, 107:7728-7733. 10.1073/pnas.0910776107, 2867874, 20388904.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 7728-7733
    • Mazur, M.T.1    Cardasis, H.L.2    Spellman, D.S.3    Liaw, A.4    Yates, N.A.5    Hendrickson, R.C.6
  • 36
    • 71449104857 scopus 로고    scopus 로고
    • A common property of amyotrophic lateral sclerosis-associated variants: destabilization of the copper/zinc superoxide dismutase electrostatic loop.
    • 10.1074/jbc.M109.023945, 2781497, 19635794
    • Molnar KS, Karabacak NM, Johnson JL, Wang Q, Tiwari A, Hayward LJ, Coales SJ, Hamuro Y, Agar JN. A common property of amyotrophic lateral sclerosis-associated variants: destabilization of the copper/zinc superoxide dismutase electrostatic loop. J Biol Chem 2009, 284:30965-30973. 10.1074/jbc.M109.023945, 2781497, 19635794.
    • (2009) J Biol Chem , vol.284 , pp. 30965-30973
    • Molnar, K.S.1    Karabacak, N.M.2    Johnson, J.L.3    Wang, Q.4    Tiwari, A.5    Hayward, L.J.6    Coales, S.J.7    Hamuro, Y.8    Agar, J.N.9
  • 37
    • 84864604524 scopus 로고    scopus 로고
    • Evaluation of the compact high-field orbitrap for top-down proteomics of human cells.
    • 10.1021/pr3004216, 22746247
    • Ahlf DR, Compton PD, Tran JC, Early BP, Thomas PM, Kelleher NL. Evaluation of the compact high-field orbitrap for top-down proteomics of human cells. J Proteome Res 2012, 11:4308-4314. 10.1021/pr3004216, 22746247.
    • (2012) J Proteome Res , vol.11 , pp. 4308-4314
    • Ahlf, D.R.1    Compton, P.D.2    Tran, J.C.3    Early, B.P.4    Thomas, P.M.5    Kelleher, N.L.6
  • 39
    • 84879604437 scopus 로고    scopus 로고
    • Consortium for Top Down Proteomics.
    • Consortium for Top Down Proteomics. , http://www.topdownproteomics.org
  • 41
    • 79956082861 scopus 로고    scopus 로고
    • Building multidimensional biomarker views of type 2 diabetes on the basis of protein microheterogeneity.
    • 10.1373/clinchem.2010.156976, 21402800
    • Borges CR, Oran PE, Buddi S, Jarvis JW, Schaab MR, Rehder DS, Rogers SP, Taylor T, Nelson RW. Building multidimensional biomarker views of type 2 diabetes on the basis of protein microheterogeneity. Clin Chem 2011, 57:719-728. 10.1373/clinchem.2010.156976, 21402800.
    • (2011) Clin Chem , vol.57 , pp. 719-728
    • Borges, C.R.1    Oran, P.E.2    Buddi, S.3    Jarvis, J.W.4    Schaab, M.R.5    Rehder, D.S.6    Rogers, S.P.7    Taylor, T.8    Nelson, R.W.9


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.