-
1
-
-
63849289224
-
Drawbacks of complex models in frequentist and Bayesian approaches to natural-resource management
-
Adkison, M.D. (2009) Drawbacks of complex models in frequentist and Bayesian approaches to natural-resource management. Ecological Applications, 19, 198-205.
-
(2009)
Ecological Applications
, vol.19
, pp. 198-205
-
-
Adkison, M.D.1
-
3
-
-
65349182397
-
Learning hierarchical models: advice for the rest of us
-
Bolker, B. (2009) Learning hierarchical models: advice for the rest of us. Ecological Applications, 19, 588-592.
-
(2009)
Ecological Applications
, vol.19
, pp. 588-592
-
-
Bolker, B.1
-
4
-
-
0000245743
-
Statistical modeling: The two cultures
-
Breiman, L. (2001) Statistical modeling: The two cultures. Statistical Science, 16, 199-215.
-
(2001)
Statistical Science
, vol.16
, pp. 199-215
-
-
Breiman, L.1
-
6
-
-
77957687857
-
Determining the parametric structure of non-linear models
-
Cole, D.J., Morgan, B.J.T. & Titterington, D.M. (2010) Determining the parametric structure of non-linear models. Mathematical Biosciences, 228, 16-30.
-
(2010)
Mathematical Biosciences
, vol.228
, pp. 16-30
-
-
Cole, D.J.1
Morgan, B.J.T.2
Titterington, D.M.3
-
9
-
-
84889398472
-
-
1st edn. Wiley, Chichester.
-
Crawley, M.J. (2007) The R Book, 1st edn. Wiley, Chichester.
-
(2007)
The R Book
-
-
Crawley, M.J.1
-
10
-
-
34548724596
-
-
Springer, New York, NY, USA.
-
Diggle, P.J. & Ribeiro Jr, P.J. (2007) Model-Based Geostatistics. Springer, New York, NY, USA.
-
(2007)
Model-Based Geostatistics
-
-
Diggle, P.J.1
Ribeiro Jr., P.J.2
-
11
-
-
84857641727
-
Approximate Bayesian inference for large spatial datasets using predictive process models
-
Eidsvik, J., Finley, A.O., Banerjee, S. & Rue, H. (2012) Approximate Bayesian inference for large spatial datasets using predictive process models. Computational Statistics and Data Analysis, 56, 1362-1380.
-
(2012)
Computational Statistics and Data Analysis
, vol.56
, pp. 1362-1380
-
-
Eidsvik, J.1
Finley, A.O.2
Banerjee, S.3
Rue, H.4
-
12
-
-
84859172281
-
AD Model Builder: using automatic differentiation for statistical inference of highly parameterized complex nonlinear models
-
Fournier, D.A., Skaug, H.J., Ancheta, J., Ianelli, J., Magnusson, A., Maunder, M.N., Nielsen, A. & Sibert, J. (2012) AD Model Builder: using automatic differentiation for statistical inference of highly parameterized complex nonlinear models. Optimization Methods and Software, 27, 233-249.
-
(2012)
Optimization Methods and Software
, vol.27
, pp. 233-249
-
-
Fournier, D.A.1
Skaug, H.J.2
Ancheta, J.3
Ianelli, J.4
Magnusson, A.5
Maunder, M.N.6
Nielsen, A.7
Sibert, J.8
-
14
-
-
41949124947
-
Using redundant parameterizations to fit hierarchical models
-
Gelman, A., van Dyk, D.A., Huang, Z. & Boscardin, J.W. (2008) Using redundant parameterizations to fit hierarchical models. Journal of Computational and Graphical Statistics, 17, 95-122.
-
(2008)
Journal of Computational and Graphical Statistics
, vol.17
, pp. 95-122
-
-
Gelman, A.1
van Dyk, D.A.2
Huang, Z.3
Boscardin, J.W.4
-
16
-
-
0003688299
-
-
SIAM, Philadelphia, PA, USA.
-
Griewank, A. & Corliss, G.F. (1992) Automatic Differentiation of Algorithms: Theory, Implementation, and Application. SIAM, Philadelphia, PA, USA.
-
(1992)
Automatic Differentiation of Algorithms: Theory, Implementation, and Application
-
-
Griewank, A.1
Corliss, G.F.2
-
18
-
-
0003405417
-
-
Princeton University Press, Princeton, NJ, USA.
-
Hilborn, R. & Mangel, M. (1997) The Ecological Detective: Confronting Models with Data. Princeton University Press, Princeton, NJ, USA.
-
(1997)
The Ecological Detective: Confronting Models with Data
-
-
Hilborn, R.1
Mangel, M.2
-
19
-
-
33645105391
-
Alternatives to statistical hypothesis testing in ecology: A guide to self teaching
-
Hobbs, N.T. & Hilborn, R. (2006) Alternatives to statistical hypothesis testing in ecology: A guide to self teaching. Ecological Applications, 16, 5-19.
-
(2006)
Ecological Applications
, vol.16
, pp. 5-19
-
-
Hobbs, N.T.1
Hilborn, R.2
-
20
-
-
0038239678
-
Model selection using AIC in the presence of one-sided information
-
Hughes, A.W. (2003) Model selection using AIC in the presence of one-sided information. Journal of Statistical Planning and Inference, 115, 397-411.
-
(2003)
Journal of Statistical Planning and Inference
, vol.115
, pp. 397-411
-
-
Hughes, A.W.1
-
21
-
-
33845508786
-
Inference for nonlinear dynamical systems
-
Ionides, E.L., Bretó, C. & King, A.A. (2006) Inference for nonlinear dynamical systems. Proceedings of the National Academy of Sciences, 103, 18438-18443.
-
(2006)
Proceedings of the National Academy of Sciences
, vol.103
, pp. 18438-18443
-
-
Ionides, E.L.1
Bretó, C.2
King, A.A.3
-
22
-
-
85141178598
-
-
1st edn. Chapman & Hall/CRC, Boca Raton, FL, USA.
-
Jones, O., Maillardet, R. & Robinson, A. (2009) Introduction to Scientific Programming and Simulation Using R, 1st edn. Chapman & Hall/CRC, Boca Raton, FL, USA.
-
(2009)
Introduction to Scientific Programming and Simulation Using R
-
-
Jones, O.1
Maillardet, R.2
Robinson, A.3
-
23
-
-
85013939029
-
-
Academic Press, Waltham, MA, USA.
-
Kéry, M. & Schaub, M. (2012) Bayesian Population Analysis Using WinBUGS: A Hierarchical Perspective. Academic Press, Waltham, MA, USA.
-
(2012)
Bayesian Population Analysis Using WinBUGS: A Hierarchical Perspective
-
-
Kéry, M.1
Schaub, M.2
-
24
-
-
85056343555
-
-
Chapman & Hall/CRC, Boca Raton, FL, USA.
-
King, R., Morgan, B.M., Gimenez, O. & Brooks, S. (2009) Bayesian Analysis of Population Ecology. Chapman & Hall/CRC, Boca Raton, FL, USA.
-
(2009)
Bayesian Analysis of Population Ecology
-
-
King, R.1
Morgan, B.M.2
Gimenez, O.3
Brooks, S.4
-
25
-
-
0346724496
-
Parameter estimation in stochastic grey-box models
-
Kristensen, N.R., Madsen, H. & Jørgensen, S.B. (2004) Parameter estimation in stochastic grey-box models. Automatica, 40, 225-237.
-
(2004)
Automatica
, vol.40
, pp. 225-237
-
-
Kristensen, N.R.1
Madsen, H.2
Jørgensen, S.B.3
-
26
-
-
34249822549
-
Data cloning: easy maximum likelihood estimation for complex ecological models using Bayesian Markov chain Monte Carlo methods
-
Lele, S.R. (2007) Data cloning: easy maximum likelihood estimation for complex ecological models using Bayesian Markov chain Monte Carlo methods. Ecology Letters, 10, 551-563.
-
(2007)
Ecology Letters
, vol.10
, pp. 551-563
-
-
Lele, S.R.1
-
27
-
-
78650349184
-
Estimability and likelihood inference for generalized linear mixed models using data cloning
-
Lele, S., Nadeem, K. & Schmuland, B. (2010) Estimability and likelihood inference for generalized linear mixed models using data cloning. Journal of the American Statistical Association, 105, 1617-1625.
-
(2010)
Journal of the American Statistical Association
, vol.105
, pp. 1617-1625
-
-
Lele, S.1
Nadeem, K.2
Schmuland, B.3
-
30
-
-
70449411807
-
The BUGS project: Evolution, critique and future directions
-
Lunn, D. (2009) The BUGS project: Evolution, critique and future directions. Statistics in Medicine, 28, 3049-3067.
-
(2009)
Statistics in Medicine
, vol.28
, pp. 3049-3067
-
-
Lunn, D.1
-
31
-
-
85055397600
-
-
1st edn. Chapman & Hall/CRC, Boca Raton, FL, USA.
-
Lunn, D., Jackson, C., Best, N., Thomas, A. & Spiegelhalter, D. (2012) The BUGS Book: A Practical Introduction to Bayesian Analysis, 1st edn. Chapman & Hall/CRC, Boca Raton, FL, USA.
-
(2012)
The BUGS Book: A Practical Introduction to Bayesian Analysis
-
-
Lunn, D.1
Jackson, C.2
Best, N.3
Thomas, A.4
Spiegelhalter, D.5
-
32
-
-
65349185056
-
Parameter identifiability, constraint, and equifinality in data assimilation with ecosystem models
-
Luo, Y., Weng, E., Wu, X., Gao, C., Zhou, X. & Zhang, L. (2009) Parameter identifiability, constraint, and equifinality in data assimilation with ecosystem models. Ecological Applications, 19, 571-574.
-
(2009)
Ecological Applications
, vol.19
, pp. 571-574
-
-
Luo, Y.1
Weng, E.2
Wu, X.3
Gao, C.4
Zhou, X.5
Zhang, L.6
-
33
-
-
84859194988
-
ADMB-IDE: Easy and efficient user interface
-
Magnusson, A. (2009) ADMB-IDE: Easy and efficient user interface. ADMB Foundation Newsletter, 1, 1-2.
-
(2009)
ADMB Foundation Newsletter
, vol.1
, pp. 1-2
-
-
Magnusson, A.1
-
34
-
-
79960788042
-
Computers in fisheries population dynamics
-
eds B.A. Megrey & E. Moksness) Springer Netherlands, Dordrecht, Netherlands.
-
Maunder, M.N., Schnute, J.T. & Ianelli, J.N. (2009) Computers in fisheries population dynamics. Computers in Fisheries Research (eds B.A. Megrey & E. Moksness ), pp. 337-372. Springer Netherlands, Dordrecht, Netherlands.
-
(2009)
Computers in Fisheries Research
, pp. 337-372
-
-
Maunder, M.N.1
Schnute, J.T.2
Ianelli, J.N.3
-
37
-
-
19044397634
-
Some details of nonlinear estimation
-
chapter 8 (eds M. Altman, J. Gill & M.P. McDonald) Wiley, Chichester.
-
McCullough, B.D. (2004) Some details of nonlinear estimation. Numerical Issues in Statistical Computing for the Social Scientist, chapter 8 (eds M. Altman, J. Gill & M.P. McDonald ), pp. 199-218. Wiley, Chichester.
-
(2004)
Numerical Issues in Statistical Computing for the Social Scientist
, pp. 199-218
-
-
McCullough, B.D.1
-
38
-
-
84947556576
-
-
John Wiley & Sons, Hoboken, NJ, USA.
-
Millar, R.B. (2011) Maximum Likelihood Estimation and Inference: With Examples in R, SAS and ADMB. John Wiley & Sons, Hoboken, NJ, USA.
-
(2011)
Maximum Likelihood Estimation and Inference: With Examples in R, SAS and ADMB
-
-
Millar, R.B.1
-
39
-
-
34247122622
-
Simplicity and complexity in ecological data analysis
-
Murtaugh, P.A. (2007) Simplicity and complexity in ecological data analysis. Ecology, 88, 56-62.
-
(2007)
Ecology
, vol.88
, pp. 56-62
-
-
Murtaugh, P.A.1
-
40
-
-
80053005302
-
Unifying optimization algorithms to aid software system users: optimx for R
-
Nash, J.C. & Varadhan, R. (2011) Unifying optimization algorithms to aid software system users: optimx for R. Journal of Statistical Software, 43, 1-14.
-
(2011)
Journal of Statistical Software
, vol.43
, pp. 1-14
-
-
Nash, J.C.1
Varadhan, R.2
-
41
-
-
0003783333
-
-
Marcel Dekker Inc., New York, NY, USA. Republished combined with the previous item in electronic form by Nash Information Services Inc., Ottawa, Canada, 1996.
-
Nash, J.C. & Walker-Smith, M. (1987) Nonlinear Parameter Estimation: An Integrated System in BASIC. Marcel Dekker Inc., New York, NY, USA. Republished combined with the previous item in electronic form by Nash Information Services Inc., Ottawa, Canada, 1996.
-
(1987)
Nonlinear Parameter Estimation: An Integrated System in BASIC
-
-
Nash, J.C.1
Walker-Smith, M.2
-
43
-
-
79953029713
-
Estimation methods for nonlinear state-space models in ecology
-
Pedersen, M., Berg, C., Thygesen, U., Nielsen, A. & Madsen, H. (2011) Estimation methods for nonlinear state-space models in ecology. Ecological Modelling, 222, 1394-1400.
-
(2011)
Ecological Modelling
, vol.222
, pp. 1394-1400
-
-
Pedersen, M.1
Berg, C.2
Thygesen, U.3
Nielsen, A.4
Madsen, H.5
-
44
-
-
70149102312
-
Reproducible research and biostatistics
-
Peng, R.D. (2009) Reproducible research and biostatistics. Biostatistics, 10, 405-408.
-
(2009)
Biostatistics
, vol.10
, pp. 405-408
-
-
Peng, R.D.1
-
45
-
-
0032421406
-
Ontogenetic scaling of foraging rates and the dynamics of a size-structured consumer-resource model
-
Persson, L., Leonardsson, K., de Roos, A.M., Gyllenberg, M. & Christensen, B. (1998) Ontogenetic scaling of foraging rates and the dynamics of a size-structured consumer-resource model. Theoretical Population Biology, 54, 270-293.
-
(1998)
Theoretical Population Biology
, vol.54
, pp. 270-293
-
-
Persson, L.1
Leonardsson, K.2
de Roos, A.M.3
Gyllenberg, M.4
Christensen, B.5
-
46
-
-
0004095784
-
-
Springer, New York, NY, USA.
-
Pinheiro, J.C. & Bates, D.M. (2000) Mixed-Effects Models in S and S-PLUS. Springer, New York, NY, USA.
-
(2000)
Mixed-Effects Models in S and S-PLUS
-
-
Pinheiro, J.C.1
Bates, D.M.2
-
47
-
-
63849160818
-
Hierarchical models in ecology: confidence intervals, hypothesis testing, and model selection using data cloning
-
Ponciano, J.M., Taper, M.L., Dennis, B. & Lele, S.R. (2009) Hierarchical models in ecology: confidence intervals, hypothesis testing, and model selection using data cloning. Ecology, 90, 356-362.
-
(2009)
Ecology
, vol.90
, pp. 356-362
-
-
Ponciano, J.M.1
Taper, M.L.2
Dennis, B.3
Lele, S.R.4
-
48
-
-
0003474751
-
-
3rd edn. Cambridge University Press, Cambridge.
-
Press, W.H., Teukolsky, S.A., Vetterling, W.T. & Flannery, B.P. (2007) Numerical Recipes 3rd Edition: The Art of Scientific Computing, 3rd edn. Cambridge University Press, Cambridge.
-
(2007)
Numerical Recipes 3rd Edition: The Art of Scientific Computing
-
-
Press, W.H.1
Teukolsky, S.A.2
Vetterling, W.T.3
Flannery, B.P.4
-
50
-
-
84889454429
-
-
Wiley, Chichester, UK.
-
Reimann, C., Filzmoser, P., Garrett, R. & Dutter, R. (2008) Statistical Data Analysis Explained: Applied Environmental Statistics with R. Wiley, Chichester, UK.
-
(2008)
Statistical Data Analysis Explained: Applied Environmental Statistics with R
-
-
Reimann, C.1
Filzmoser, P.2
Garrett, R.3
Dutter, R.4
-
51
-
-
85147634788
-
-
Academic Press, New York, NY, USA.
-
Royle, J. & Dorazio, R. (2008) Hierarchical Modeling and Inference in Ecology: The Analysis of Data from Populations, Metapopulations and Communities. Academic Press, New York, NY, USA.
-
(2008)
Hierarchical Modeling and Inference in Ecology: The Analysis of Data from Populations, Metapopulations and Communities
-
-
Royle, J.1
Dorazio, R.2
-
52
-
-
84857640888
-
Direct fitting of dynamic models using integrated nested Laplace approximations: INLA
-
Ruiz-Cárdenas, R., Krainski, E.T. & Rue, H. (2012) Direct fitting of dynamic models using integrated nested Laplace approximations: INLA. Computational Statistics and Data Analysis, 56, 1808-1828.
-
(2012)
Computational Statistics and Data Analysis
, vol.56
, pp. 1808-1828
-
-
Ruiz-Cárdenas, R.1
Krainski, E.T.2
Rue, H.3
-
53
-
-
77956069051
-
Simple means to improve the interpretability of regression coefficients
-
Schielzeth, H. (2010) Simple means to improve the interpretability of regression coefficients. Methods in Ecology and Evolution, 1, 103-113.
-
(2010)
Methods in Ecology and Evolution
, vol.1
, pp. 103-113
-
-
Schielzeth, H.1
-
54
-
-
33747839964
-
Automatic approximation of the marginal likelihood in non-Gaussian hierarchical models
-
Skaug, H. & Fournier, D. (2006) Automatic approximation of the marginal likelihood in non-Gaussian hierarchical models. Computational Statistics and Data Analysis, 51, 699-709.
-
(2006)
Computational Statistics and Data Analysis
, vol.51
, pp. 699-709
-
-
Skaug, H.1
Fournier, D.2
-
55
-
-
84900137873
-
-
1st edn. Springer, New York, NY, USA.
-
Soetaert, K. & Herman, P.M.J. (2008) A Practical Guide to Ecological Modelling: Using R as a Simulation Platform, 1st edn. Springer, New York, NY, USA.
-
(2008)
A Practical Guide to Ecological Modelling: Using R as a Simulation Platform
-
-
Soetaert, K.1
Herman, P.M.J.2
-
56
-
-
84855560675
-
dclone: Data cloning in R
-
Sólymos, P. (2010) dclone: Data cloning in R. The R Journal, 2, 29-37.
-
(2010)
The R Journal
, vol.2
, pp. 29-37
-
-
Sólymos, P.1
-
57
-
-
0036435040
-
Bayesian measures of model complexity and fit
-
Spiegelhalter, D.J., Best, N., Carlin, B.P. & Van der Linde, A. (2002) Bayesian measures of model complexity and fit. Journal of the Royal Statistical Society B, 64, 583-640.
-
(2002)
Journal of the Royal Statistical Society B
, vol.64
, pp. 583-640
-
-
Spiegelhalter, D.J.1
Best, N.2
Carlin, B.P.3
Van der Linde, A.4
-
58
-
-
54749117949
-
-
3rd edn. URL, Retrieved 17 Nov 2011.
-
Spiegelhalter, D., Thomas, A., Best, N. & Lunn, D. (2011) OpenBUGS User Manual, 3rd edn. URL http://www.openbugs.info/Manuals/Manual.html. Retrieved 17 Nov 2011.
-
(2011)
OpenBUGS User Manual
-
-
Spiegelhalter, D.1
Thomas, A.2
Best, N.3
Lunn, D.4
-
62
-
-
1342287624
-
Better inferences from population-dynamics experiments using Monte Carlo state-space likelihood methods
-
de Valpine, P. (2003) Better inferences from population-dynamics experiments using Monte Carlo state-space likelihood methods. Ecology, 84, 3064-3077.
-
(2003)
Ecology
, vol.84
, pp. 3064-3077
-
-
de Valpine, P.1
-
63
-
-
17044393291
-
Compensatory larval responses shift tradeoffs associated with predator-induced hatching plasticity
-
Vonesh, J.R. & Bolker, B.M. (2005) Compensatory larval responses shift tradeoffs associated with predator-induced hatching plasticity. Ecology, 86, 1580-1591.
-
(2005)
Ecology
, vol.86
, pp. 1580-1591
-
-
Vonesh, J.R.1
Bolker, B.M.2
-
64
-
-
79955546353
-
The arcsine is asinine: the analysis of proportions in ecology
-
Warton, D.I. & Hui, F.K.C. (2011) The arcsine is asinine: the analysis of proportions in ecology. Ecology, 92, 3-10.
-
(2011)
Ecology
, vol.92
, pp. 3-10
-
-
Warton, D.I.1
Hui, F.K.C.2
-
66
-
-
59349116454
-
-
Zuur, A.F., Ieno, E.N., Walker, N.J., Saveliev, A.A. & Smith, G.M. (2009) Mixed Effects Models and Extensions in Ecology with R, 1st edn. Springer, New York, NY, USA.
-
(2009)
Mixed Effects Models and Extensions in Ecology with R
-
-
Zuur, A.F.1
Ieno, E.N.2
Walker, N.J.3
Saveliev, A.A.4
Smith, G.M.5
|