Caldicoprobacter guelmensis sp. nov., a thermophilic, anaerobic, xylanolytic bacterium isolated from a hot spring

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue PART6, 2013, Pages 2049-2053

  Bouanane Darenfed, Amel ^a   Hania, Wajdi Ben ^b,c   Hacene, Hocine ^a   Cayol, Jean Luc ^b   Ollivier, Bernard ^b   Fardeau, Marie Laure ^b  

^a UNIVERSITY OF SCIENCES AND TECHNOLOGY HOUARI BOUMEDIENE   (Algeria)

^b AIX MARSEILLE UNIVERSITY   (France)

^c UNIVERSITY OF CARTHAGE   (Tunisia)

Author keywords

[No Author keywords available]

Indexed keywords

ACETIC ACID; ARABINOSE; CARBON DIOXIDE; CELLOBIOSE; DEUTERIUM; FRUCTOSE; GALACTOSE; GLUCOSE; LACTIC ACID; LACTOSE; MALTOSE; MANNOSE; MELIBIOSE; NITRATE; NITRITE; PYRUVIC ACID; RAFFINOSE; RIBOSE; RNA 16S; SUCROSE; SULFATE; SULFITE; SULFUR; THIOSULFATE; XYLAN; XYLOSE;

ANAEROBIC BACTERIUM; ARTICLE; BACTERIAL GROWTH; BACTERIUM ISOLATE; CALDICOPROBACTER GUELMENSIS; CLOSTRIDIALES; FERMENTATION; GENE SEQUENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; THERMAL SPRING; THERMOPHILIC BACTERIUM;

ALGERIA; BACTERIA, ANAEROBIC; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; FATTY ACIDS; FERMENTATION; GRAM-POSITIVE BACTERIA; HOT SPRINGS; MOLECULAR SEQUENCE DATA; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; XYLANS;

ACETOMICROBIUM; BACTERIA (MICROORGANISMS); CLOSTRIDIALES;

EID: 84878877164     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.043497-0     Document Type: Article

References (18)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
2. Balch, W. E., Fox, G. E., Magrum, L. J., Woese, C. R. & Wolfe, R. S. (1979). Methanogens: reevaluation of a unique biological group. Microbiol Rev 43, 260-296.
3. Ben Dhia Thabet, O., Fardeau, M.-L., Joulian, C., Thomas, P., Hamdi, M., Garcia, J.-L. & Ollivier, B. (2004). Clostridium tunisiense sp. nov., a new proteolytic, sulfur-reducing bacterium isolated from an olive mill wastewater contaminated by phosphogypse. Anaerobe 10, 185-190.
4. Bouanane-Darenfed, A., Fardeau, M.-L., Gregoire, P., Joseph, M., Kebbouche-Gana, S., Benayad, T., Hacene, H., Cayol, J.-L. & Ollivier, B. (2011). Caldicoprobacter algeriensis sp. nov. a new thermophilic anaerobic, xylanolytic bacterium isolated from an Algerian hot spring. Curr Microbiol 62, 826-832.
5. Cashion, P., Holder-Franklin, M. A., McCully, J. & Franklin, M. (1977). A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81, 461-466.
6. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-787.
7. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
8. Hungate, R. E. (1969). A roll -tube method for cultivation of strict anaerobes. In Methods in Microbiology, vol. 3B, pp. 117-132.Edited by J. R. Norris & D. W. Ribbons. New York: Academic Press
9. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
10. Kuykendall, L. D., Roy, M. A., O'Neill, J. J. & Devine, T. E. (1988). Fatty acids, antibiotic resistance, and desoxyribonucleic acid homology groups of Bradyrhizobium japonicum. Int J Syst Bacteriol 38, 358-361.
11. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C. content of deoxyribonucleic acid by highperformance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
12. Miller, L. T. (1982). Single derivatization method for routine analysis of bacterial whole-cell fatty acid methyl esters, including hydroxy acids. J Clin Microbiol 16, 584-586.
13. Rhuland, L. E., Work, E., Denman, R. F. & Hoare, D. S. (1955). The behavior of the isomers of a,e-diaminopimelic acid on paper chromatograms. J Am Chem Soc 77, 4844-4846.
14. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
15. Schumann, P. (2011). Peptidoglycan structure. In Methods in Microbiology, vol. 38, pp. 101-129. Edited by F. Rainey & A. Oren. Chennay: Academic Press.
16. Winker, S. & Woese, C. R. (1991). A definition of the domains Archaea, Bacteria and Eucarya in terms of small subunit ribosomal RNA characteristics. Syst Appl Microbiol 14, 305-310.
17. Winter, J., Braun, E. & Zabel, H. P. (1987). Acetomicrobium faecalis spec. nov., a strictly anaerobic bacterium from sewage sludge, producing ethanol from pentoses. Syst Appl Microbiol 9, 71-76.
18. Yokoyama, H., Wagner, I. D. & Wiegel, J. (2010). Caldicoprobacter oshimai gen. nov., sp. nov., an anaerobic, xylanolytic, extremely thermophilic bacterium isolated from sheep faeces, and proposal of Caldicoprobacteraceae fam. nov. Int J Syst Evol Microbiol 60, 67-71.