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Volumn 29, Issue 12, 2013, Pages 1565-1567

Exome-based analysis for RNA epigenome sequencing data

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TRANSCRIPTOME;

EID: 84878874512     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt171     Document Type: Article
Times cited : (131)

References (20)
  • 1
    • 33847032960 scopus 로고    scopus 로고
    • The mammalian epigenome
    • Bernstein, B.E. et al. (2007) The mammalian epigenome. Cell, 128, 669-681.
    • (2007) Cell , vol.128 , pp. 669-681
    • Bernstein, B.E.1
  • 2
    • 78651335915 scopus 로고    scopus 로고
    • The RNA modification database, RNAMDB: 2011 update
    • Cantara, W.A. et al. (2011) The RNA modification database, RNAMDB: 2011 update. Nucleic Acids Res., 39, D195-D201.
    • (2011) Nucleic Acids Res , vol.39
    • Cantara, W.A.1
  • 3
    • 84865757142 scopus 로고    scopus 로고
    • Landscape of transcription in human cells
    • Djebali, S. et al. (2012) Landscape of transcription in human cells. Nature, 489, 101-108.
    • (2012) Nature , vol.489 , pp. 101-108
    • Djebali, S.1
  • 4
    • 84860779086 scopus 로고    scopus 로고
    • Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
    • Dominissini, D. et al. (2012) Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq. Nature, 485, 201-206.
    • (2012) Nature , vol.485 , pp. 201-206
    • Dominissini, D.1
  • 5
    • 79957842166 scopus 로고    scopus 로고
    • Computational methods for transcriptome annotation and quantification using RNA-seq
    • Garber, M. et al. (2011) Computational methods for transcriptome annotation and quantification using RNA-seq. Nat. Methods, 8, 469-477.
    • (2011) Nat. Methods , vol.8 , pp. 469-477
    • Garber, M.1
  • 6
    • 78649267733 scopus 로고    scopus 로고
    • Grand challenge commentary: RNA epigenetics
    • He, C. (2010) Grand challenge commentary: RNA epigenetics . Nat. Chem. Biol., 6, 863-865.
    • (2010) Nat. Chem. Biol , vol.6 , pp. 863-865
    • He, C.1
  • 7
    • 57449100870 scopus 로고    scopus 로고
    • Design and analysis of ChIP-seq experiments for DNA-binding proteins
    • Kharchenko, P.V. et al. (2008) Design and analysis of ChIP-seq experiments for DNA-binding proteins. Nat. Biotechnol., 26, 1351-1359.
    • (2008) Nat. Biotechnol , vol.26 , pp. 1351-1359
    • Kharchenko, P.V.1
  • 8
    • 80052976954 scopus 로고    scopus 로고
    • ChIP-Seq: Technical considerations for obtaining highquality data
    • Kidder, B.L. et al. (2011) ChIP-Seq: technical considerations for obtaining highquality data. Nat. Immunol., 12, 918-922.
    • (2011) Nat. Immunol , vol.12 , pp. 918-922
    • Kidder, B.L.1
  • 9
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/map format and SAMtools
    • Li, H. et al. (2009) The sequence alignment/map format and SAMtools. Bioinformatics, 25, 2078-2079.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 10
    • 84862649489 scopus 로고    scopus 로고
    • Comprehensive analysis of mRNA methylation reveals enrichment in 30 UTRs and near stop codons
    • Meyer, K.D. et al. (2012) Comprehensive analysis of mRNA methylation reveals enrichment in 30 UTRs and near stop codons. Cell, 149, 1635-1646.
    • (2012) Cell , vol.149 , pp. 1635-1646
    • Meyer, K.D.1
  • 11
    • 84861397707 scopus 로고    scopus 로고
    • Picking ChIP-seq peak detectors for analyzing chromatin modification experiments
    • Micsinai, M. et al. (2012) Picking ChIP-seq peak detectors for analyzing chromatin modification experiments. Nucleic Acids Res., 40, e70.
    • (2012) Nucleic Acids Res , vol.40
    • Micsinai, M.1
  • 13
    • 0008662524 scopus 로고
    • Homogeneity of results in testing samples from Poisson series: With an application to testing clover seed for dodder
    • Przyborowski, J. and Wilenski, H. (1940) Homogeneity of results in testing samples from Poisson series: with an application to testing clover seed for dodder. Biometrika, 31, 313-323.
    • (1940) Biometrika , vol.31 , pp. 313-323
    • Przyborowski, J.1    Wilenski, H.2
  • 14
    • 78651271733 scopus 로고    scopus 로고
    • Integrative genomics viewer
    • Robinson, J.T. et al. (2011) Integrative genomics viewer. Nat. Biotechnol., 29, 24-26.
    • (2011) Nat. Biotechnol , vol.29 , pp. 24-26
    • Robinson, J.T.1
  • 15
    • 84865755978 scopus 로고    scopus 로고
    • The accessible chromatin landscape of the human genome
    • Thurman, R.E. et al. (2012) The accessible chromatin landscape of the human genome. Nature, 489, 75-82.
    • (2012) Nature , vol.489 , pp. 75-82
    • Thurman, R.E.1
  • 16
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-Seq
    • Trapnell, C. et al. (2009) TopHat: discovering splice junctions with RNA-Seq. Bioinformatics, 25, 1105-1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1
  • 17
    • 83855165105 scopus 로고    scopus 로고
    • Repetitive DNA and next-generation sequencing: Computational challenges and solutions
    • Treangen, T.J. and Salzberg, S.L. (2012) Repetitive DNA and next-generation sequencing: computational challenges and solutions. Nat. Rev. Genet., 13, 36-46.
    • (2012) Nat. Rev. Genet , vol.13 , pp. 36-46
    • Treangen, T.J.1    Salzberg, S.L.2
  • 18
    • 77955368935 scopus 로고    scopus 로고
    • Evaluation of algorithm performance in ChIP-seq peak detection
    • Wilbanks, E.G. and Facciotti, M.T. (2010) Evaluation of algorithm performance in ChIP-seq peak detection. PLoS One, 5, e11471.
    • (2010) PLoS One , vol.5
    • Wilbanks, E.G.1    Facciotti, M.T.2
  • 19
    • 53849146020 scopus 로고    scopus 로고
    • Model-based analysis of ChIP-Seq MACS
    • Zhang, Y. et al. (2008)Model-based analysis of ChIP-Seq (MACS). Genome Biol., 9, R137.
    • (2008) Genome Biol , vol.9
    • Zhang, Y.1
  • 20
    • 78650253763 scopus 로고    scopus 로고
    • Genome-wide identification of polycomb-associated RNAs by RIP-seq
    • Zhao, J. et al. (2010) Genome-wide identification of polycomb-associated RNAs by RIP-seq. Mol. Cell, 40, 939-953.
    • (2010) Mol. Cell , vol.40 , pp. 939-953
    • Zhao, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.