Ogataea kanchanaburiensis sp. nov. and Ogataea wangdongensis sp. nov., two novel methylotrophic yeast species from phylloplane in Thailand

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 103, Issue 3, 2013, Pages 551-558

  Limtong, Savitree ^a   Kaewwichian, Rungluk ^a   Groenewald, Marizeth ^b  

^a KASETSART UNIVERSITY   (Thailand)

^b CBS KNAW FUNGAL BIODIVERSITY CENTRE   (Netherlands)

Author keywords

Methylotrophic yeast; Ogataea kanchanaburiensis sp. nov.; Ogataea wangdongensis sp. nov.; Phylloplane; Thailand

Indexed keywords

INTERNAL TRANSCRIBED SPACER; RIBOSOME RNA;

ARTICLE; FUNGAL STRAIN; FUNGUS IDENTIFICATION; FUNGUS ISOLATION; METHYLOTROPHIC YEAST; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; OGATAEA KANCHANABURIENSIS; OGATAEA WANGDONGENSIS; OPERON; PRIORITY JOURNAL; RNA GENE; RNA SEQUENCE; SEQUENCE HOMOLOGY; THAILAND;

CLUSTER ANALYSIS; DNA, FUNGAL; DNA, RIBOSOMAL; DNA, RIBOSOMAL SPACER; GENES, RRNA; MANGIFERA; MICROSCOPY; MOLECULAR SEQUENCE DATA; MYCOLOGICAL TYPING TECHNIQUES; PHYLOGENY; PLANT LEAVES; RNA, FUNGAL; RNA, RIBOSOMAL; SACCHAROMYCETALES; SEQUENCE ANALYSIS, DNA; THAILAND; VITIS;

CANDIDA NITRATOPHILA; CANDIDA SUZUKII; MANGIFERA INDICA; PICHIA; VITIS VINIFERA;

EID: 84878833690     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-012-9837-5     Document Type: Article

References (41)

1. Altschul SF, Madden TL, Schaffer JZ, Zhang J, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389-3402
2. Dlauchy D, Tornai-Lehoczki J, Fulop L, Péter G (2003) Pichia (Komatagaella) pseudopastoris sp. nov., a new yeast species from Hungary. Antonie Van Leeuwenhoek 83:327-332
3. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
4. Fonseca A, Inacio J (2006) Phylloplane yeasts. In: Rosa C, Péter G (eds) Biodiversity and ecophysiology of yeasts. Springer, Germany, pp 263-301
5. Glushakova AM, Yurkov AM, Chernov IY (2007) Massive isolation of anamorphous ascomycete yeasts Candida oleophila from plant phyllosphere. Mikrobiologiia 76:799-803
6. Glushakova AM, Maximova IA, Kachalkin AV, Yurkov AM (2010) Ogataea cecidiorum sp. nov., a methanaol-assimilating yeast isolated from galls on willow leaves. Antonie Van Leeuwenhoek 98:93-101
7. Koowadjanakul N, Jindamorakot S, Yongmanitchai W, Limtong S (2011) Ogataea phyllophila sp. nov., Candida chumphonensis sp. nov. and Candida mattranensis sp. nov., three methylotrophic yeast species from phylloplane in Thailand. Antonie Van Leeuwenhoek 100:207-217
8. Kuraishi H, Katayama-Fujimura Y, Sugiyama J, Yokoyama T (1985) Ubiquinone systems in fungi. I. Distribution of ubiquinones in the major families of ascomycetes, basidiomycetes, and deuteromycetes, and their taxonomic implications. Trans Mycol Soc Jpn 26:383-395
9. Kurtzman CP (2005) Description of Komagataella phaffii sp. nov. and the transfer of Pichia pseudopastoris to the methylotrophic yeast genus Komagataella. Int J Syst Evol Microbiol 55:973-976
10. Kurtzman CP (2011a) A new methanol assimilating yeast, Ogataea parapolymorpha, the ascosporic state of Candida parapolymorpha. Antonie Van Leeuwenhoek 100:455-462
11. Kurtzman CP (2011b) Ogataea Y. Yamada, K. Maeda & Mikata. In: Kurtzman CP, Fell JW, Boekhout T (eds) The yeasts, a taxonomic study, 5th edn. Elsevier, Amsterdam, pp 645-671
12. Kurtzman CP, Robnett CJ (2010) Systematics of methanol assimilating yeasts and neighboring taxa from multigene sequence analysis and the proposal of Peterozyma gen. nov., a new member of the Saccharomycetales. FEMS Yeast Res 10:353-361
13. Lachance M-A, Boekhout T, Scorzetti G, Fell JW, Kurtzman CP (2011) Candida Berkhout. In: Kurtzman CP, Fell JW, Boekhout T (eds) The yeasts, a taxonomic study, 5th edn. Elsevier, Amsterdam, pp 987-1279
14. Landell MF, Billodre R, Ramos JP, Leoncini O, Vainstein MH, Valente P (2010) Candida aechmeae sp. nov. and Candida vrieseae sp. nov., novel yeast species isolated from the phylloplane of bromeliads in Southern Brazil. Int J Syst Evol Microbiol 60:244-248
15. Limtong S, Srisuk N, Yongmanitchai W, Kawasaki H, Yurimoto H, Nakase T, Kato N (2004) Three new thermotolerant methylotrophic yeasts, Candida krabiensis sp. nov., Candida sithepensis sp. nov., and Pichia siamensis sp. nov., isolate in Thailand. J Gen Appl Microbiol 50:119-127
16. Limtong S, Yongmanitchai W, Tun MM, Kawasaki H, Seki T (2007) Kazachstania siamensis sp. nov., an ascomycetous yeast species from forest soil in Thailand. Int J Syst Evol Microbiol 57:419-422
17. Limtong S, Srisuk N, Yongmanitchai W, Yurimoto H, Nakase T (2008) Ogataea chonburiensis sp. nov. and Ogataea nakhonphanomensis sp. nov., thermotolerant, methylotrophic yeast species isolated in Thailand, and transfer of Pichia siamensis and Pichia thermomethanolica to the genus Ogataea. Int J Syst Evol Microbiol 58:302-307
18. Mikata K, Yamada Y (1995) Ogataea kodamae, a new combination for a methanol-assimilating yeast species, Pichia kodamae van der Walt et Yarrow. Res Commun Inst Ferment 17:99-101
19. Miller JS, Funk VA, Wagner WL, Barrie F, Hoch PC, Herendeen P (2011) Outcomes of the 2011 botanical nomenclature section at the XVIII International Botanical Congress. PhytoKeys 5:1-3
20. Morais PB, Teixeira LCRS, Bowles JM, Lachance M-A, Rosa CA (2004) Ogataea falcaomoraisii sp. nov., a sporogenous methylotrophic yeast from tree exudates. FEMS Yeast Res 5:81-85
21. Nagatsuka Y, Saito S, Sugiyama J (2008) Ogataea neopini sp. nov. and O. corticis sp. nov., with the emendation of the ascomycete yeast genus Ogataea, and transfer of Pichia zsoltii, P. dorogensis, and P. trehaloabstinens to it. J Gen Appl Microbiol 54:353-365
22. Nakase T, Suzuki M (1986) Bullera megalospora, a new species of yeast forming large ballistospores isolated from dead leaves of Oryza sativa, Miscanthus sinensis and Sasa sp. in Japan. J Gen Appl Microbiol 32:225-240
23. Nakase T, Takashima M, Itoh M, Fungsin B, Potacharoen W, Atthasampunna P, Komagata K (2001) Ballistoconidium-froming yeasts found in the phyllosphere of Thailand. Microbiol Cult Coll 17:23-33
24. Nakase T, Imanishi Y, Ninomiya S, Takashima M (2010) Candida rishirensis sp. nov., a novel methylotrophic anamorphic yeast species isolated from soil on Rishiri island in Japan. J Gen Appl Microbiol 56:169-173
25. Nemecek-Marshall M, MacDonald RC, Franzen JJ, Wojciechowski C, Fall R (1995) Methanol emission from leaves. Plant Physiol 108:1359-1368
26. Péter G, Dlauchy D, Tornai-Lehoczki J, Kurtzman CP (2005) Kuraishia molischiana sp. nov., the teleomorph of Candida molischiana. Antonie Van Leeuwenhoek 88:241-247
27. Péter G, Tornai-Lehoczki J, Dlauchy D (2007) Ogataea allantospora sp. nov., an ascomycetous yeast species from phylloplane. Antonie Van Leeuwenhoek 92:443-448
28. Péter G, Tornai-Lehoczki J, Dlauchy D (2008) Ogataea nitratroaversa sp. nov., a methylotrophic yeast species from temperate forest habitats. Antonie Van Leeuwenhoek 94:217-222
29. Péter G, Tornai-Lehoczki J, Dlauchy D (2009) Ogataea populialbae sp. nov., a yeast species from white poplar. FEMS Yeast Res 9:936-941
30. Péter G, Dlauchy D, Tornai-Lehoczki J, Gouliamova D, Kurtzman CP (2011) Ogataea saltuana sp. nov., a novel methanol-assimilating yeast species. Antonie Van Leeuwenhoek 100:375-383
31. Phaff HJ, Starmer WT (1987) Yeasts associated with plants, insects and soil. In: Rose AH, Harrison JS (eds) The Yeasts, 2nd edn. Academic, London, pp 123-180
32. Slavikova E, Vadkertiova R, Vranova D (2009) Yeasts colonizing the leaves of fruit trees. Ann Microbiol 59:419-424
33. Suh S-O, Zhou JJ (2010) Methylotrophic yeasts near Ogataea (Hansenula) polymorpha: a proposal of Ogataea angusta comb. nov. and Candida parapolymorpha sp. nov. FEMS Yeast Res 10:631-638
34. Suh SO, Blackwell M, Kurtzman CP, Lachance M-A (2006) Phylogenetics of Saccharomycetales, the ascomycete yeasts. Mycologia 98:1006-1017
35. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731-2739
36. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) CLUSTAL-X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24:4876-4882
37. White TJ, Bruns T, Lee S, Taylor JW (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols: a guide to methods and applications. Academic, New York, pp 315-322
38. Yamada Y, Kondo K (1973) Coenzyme Q system in the classification of the yeast genera Rhodotorula and Cryptococcus, and the yeast-like genera Sporobolomyces and Rhodosporidium. J Gen Appl Microbiol 19:59-77
39. Yamada Y, Maeda K, Mikata K (1994) The phylogenetic relationships of the hat-shaped ascospore-forming, nitrate-assimilating Pichia species, formerly classified in the genus Hansenula Sydow et Sydow, based on the partial sequences of 18S and 26S ribosomal RNAs (Saccharomycetaceae): the proposal of three new genera, Ogataea, Kuraishia, and Nakazawaea. Biosci Biotechnol Biochem 58:1245-1257
40. Yamada Y, Matsuda M, Maeda K, Mikata K (1995) The phylogenetic relationships of methanol-assimilating yeasts based on the partial sequences of 18S and 26S ribosomal RNAs: the proposal of Komagataella gen. nov. (Saccharomycetaceae). Biosci Biotechnol Biochem 59:439-444
41. Yarrow D (1998) Methods for the isolation, maintenance and identification of yeasts. In: Kurtzman CP, Fell JW (eds) The yeasts, a taxonomic study, 4th edn. Elsevier, Amsterdam, pp 77-100