Understanding the pH-dependent immobilization efficacy of feruloyl esterase-C on mesoporous silica and its structure-activity changes

Journal of Molecular Catalysis B: Enzymatic

Volumn 93, Issue , 2013, Pages 65-72

  Thörn, Christian ^a   Udatha, D B R K Gupta ^a   Zhou, Hao ^b   Christakopoulos, Paul ^c   Topakas, Evangelos ^d   Olsson, Lisbeth ^a  

^a CHALMERS UNIVERSITY OF TECHNOLOGY   (Sweden)

^b DALIAN UNIVERSITY OF TECHNOLOGY   (China)

^c LULEÅ UNIVERSITY OF TECHNOLOGY   (Sweden)

^d NATIONAL TECHNICAL UNIVERSITY OF ATHENS   (Greece)

Author keywords

Docking; Enzyme immobilization; Feruloyl esterases; Mesoporous silica; Molecular simulations

Indexed keywords

DOCKING; ELECTROSTATICS; ESTERS; MOLECULAR MODELING; TRANSESTERIFICATION;

ELECTROSTATIC POTENTIALS; ELECTROSTATIC SURFACES; FERULOYL ESTERASE; IMMOBILIZATION PROCESS; MESOPOROUS SILICA; MOLECULAR SIMULATIONS; TRANSESTERIFICATION ACTIVITY; TRANSESTERIFICATION REACTION;

ENZYME IMMOBILIZATION;

ESTERASE; FERULOYL ESTERASE C; FUNGAL ENZYME; SILICON DIOXIDE; UNCLASSIFIED DRUG;

ARTICLE; ENZYME ACTIVITY; ENZYME BINDING; ENZYME IMMOBILIZATION; ENZYME STRUCTURE; FUSARIUM OXYSPORUM; MOLECULAR MODEL; PH; STATIC ELECTRICITY; STRUCTURE ACTIVITY RELATION; SURFACE CHARGE; TRANSESTERIFICATION;

FUSARIUM OXYSPORUM;

EID: 84878824455     PISSN: 13811177     EISSN: 18733158     Source Type: Journal    
DOI: 10.1016/j.molcatb.2013.04.011     Document Type: Article

References (44)

1. E. Topakas, C. Vafiadi, and P. Christakopoulos Process Biochem. 42 2007 497
2. J.M. Otero, M.A. Papadakis, D.B.R.K.G. Udatha, J. Nielsen, and G. Panagiotou PLoS ONE 5 2010 e13606
3. C. Vafiadi, E. Topakas, L.J. Alderwick, G.S. Besra, and P. Christakopoulos Biotechnol. Lett. 29 2007 1771
4. S. Giuliani, C. Piana, L. Setti, A. Hochkoeppler, P.G. Pifferi, G. Williamson, and C.B. Faulds Biotechnol. Lett. 23 2001 325
5. S. Hudson, J. Cooney, and E. Magner Angew. Chem. Int. Ed. 47 2008 8582
6. A.Y. Yamaguchi, M. Namekawa, T. Kamijo, T. Itoh, and N. Teramae Anal. Chem. 83 2011 2939
7. Z. Cabrera, G. Fernandez-Lorente, R. Fernandez-Lafuente, J.M. Palomo, and J.M. Guisan J. Mol. Catal. B: Enzym. 57 2009 171
8. C.-H. Lee, T.-S. Lin, and C.-Y. Mou Nano Today 4 2009 165
9. L.-C. Sang, and M.-O. Coppens Phys. Chem. Chem. Phys. 13 2011 6689
10. C. Thörn, H. Gustafsson, and L. Olsson J. Mol. Catal. B: Enzym. 72 2011 57
11. R. Tosaka, H. Yamamoto, I. Ohdomari, and T. Watanabe Langmuir 26 2010 9950
12. A.M. Klibanov Chem. Tech. 16 1986 354
13. A. Zaks, and A.M. Klibanov J. Biol. Chem. 263 1988 3194
14. D. Goradia, J. Cooney, B.K. Hodnett, and E. Magner Biotechnol. Progr. 22 2008 1125
15. Z. Zhou, and M. Hartmann Top. Catal. 55 2012 1081
16. R.F. Sabirianov, A. Rubinstein, and F. Namavar Phys. Chem. Chem. Phys. 13 2011 6597
17. L. Giussani, G. Tabacchi, E. Gianotti, S. Coluccia, and E. Fois Philos. Trans. R. Soc. A 370 2012 1463
18. M. Moukouli, E. Topakas, and P. Christakopoulos Appl. Microbiol. Biotechnol. 79 2008 245
19. H. Zhou, Y. Qu, Y. Bu, X. Li, C. Kong, Q. Ma, Q. Zhang, X. Zhang, and J. Zhou ChemPlusChem 77 2012 293
20. J.-F. Wang, D.-Q. Wei, Y. Lin, Y.-H. Wang, H.-L. Du, Y.-X. Li, and K.-C. Chou Biochem. Biophys. Res. Commun. 359 2007 323
21. B. Tang, K. Gong, J. Wang, Y. Li, and D. Wei Chin. Sci. Bull. 55 2010 1619
22. D.B.R.K.G. Udatha, N. Sugaya, L. Olsson, and G. Panagiotou Sci. Rep. 2 2012
23. D. Zhao, Q. Huo, J. Feng, B.F. Chmelka, and G.D. Stucky J. Am. Chem. Soc. 120 1998 6024
24. D. Zhao, J. Feng, Q. Huo, N. Melosh, G.H. Fredrickson, B.F. Chmelka, and G.D. Stucky Science 279 1998 548
25. J.U. Bowie, R. Luthy, and D. Eisenberg Science 253 1991 164
26. S. Wu, and Y. Zhang Nucleic Acids Res. 35 2007 3375
27. A. Roy, A. Kucukural, and Y. Zhang Nat. Protoc. 5 2010 725
28. Y. Zhang, and J. Skolnick J. Comput. Chem. 25 2004 865
29. B. Hess, C. Kutzner, D. van der Spoel, and E. Lindahl J. Chem. Theory Comput. 4 2008 435
30. S. Hudson, J. Cooney, B.K. Hodnett, and E. Magner Chem. Mater. 19 2007 2049
31. E. Weber, D. Sirim, T. Schreiber, B. Thomas, J. Pleiss, M. Hunger, R. Gläser, and V.B. Urlacher J. Mol. Catal. B: Enzym. 64 2010 29
32. R.L. Thurlkill, G.R. Grimsley, J.M. Scholtz, and C.N. Pace Protein Sci. 15 2006 1214
33. D.J. Diller, and K.M. Merz Jr. Proteins 43 2001 113
34. D.J. Diller, and R. Li J. Med. Chem. 46 2003 4638
35. S.N. Rao, M.S. Head, A. Kulkarni, and J.M. LaLonde J. Chem. Inf. Model. 47 2007 2159
36. H. Essa, E. Magner, J. Cooney, and B.K. Hodnett J. Mol. Catal. B: Enzym. 49 2007 61
37. C. Thörn, N. Carlsson, H. Gustafsson, K. Holmberg, B. Åkerman, and L. Olsson Microporous Mesoporous Mater. 165 2013 240
38. S. Hudson, E. Magner, J. Cooney, and B.K. Hodnett J. Phys. Chem. B 109 2005 19496
39. M.J. Ondrechen, J.G. Clifton, and D. Ringe Proc. Natl. Acad. Sci. U. S. A. 98 2001 12473
40. O.D. Ekici, M. Paetzel, and R.E. Dalbey Protein Sci. 17 2008 2023
41. D.B.R.K.G. Udatha, V. Mapelli, G. Panagiotou, and L. Olsson PLoS One 7 2012 e39473
42. E. Topakas, M. Moukouli, M. Dimarogona, and P. Christakopoulos Appl. Microbiol. Biotechnol. 94 2012 399
43. D.E.B. Gomes, R.D. Lins, P.G. Pascutti, C. Lei, and T.A. Soares J. Phys. Chem. B 114 2010 531
44. P. Ugliengo, M. Sodupe, F. Musso, I.J. Bush, R. Orlando, and R. Dovesi Adv. Mater. 20 2008 4579