-
1
-
-
0036375743
-
Discovering local structure in gene expression data: The order-preserving submatrix problem
-
Amir Ben-Dor, Benny Chor, Richard Karp, and Zohar Yakhini, 'Discovering local structure in gene expression data: the order-preserving submatrix problem', in Proc. of RECOMB '02, pp. 49-57, (2002).
-
(2002)
Proc. of RECOMB '02
, pp. 49-57
-
-
Ben-Dor, A.1
Chor, B.2
Karp, R.3
Yakhini, Z.4
-
2
-
-
0001089823
-
Support vector clustering
-
Asa Ben-Hur, David Horn, Hava T. Siegelmann, and Vladimir Vapnik, 'Support Vector Clustering', Journal of Machine Learning Research, 2, 125-137, (2001).
-
(2001)
Journal of Machine Learning Research
, vol.2
, pp. 125-137
-
-
Ben-Hur, A.1
Horn, D.2
Siegelmann, H.T.3
Vapnik, V.4
-
4
-
-
0034566393
-
Biclustering of expression data
-
Yizong Cheng and George M. Church, 'Biclustering of Expression Data', in Proc. of ISMB'00, pp. 93-103, (2000).
-
(2000)
Proc. of isMB'00
, pp. 93-103
-
-
Cheng, Y.1
Church, G.M.2
-
6
-
-
33846045953
-
Principles of microRNA regulation of a human cellular signaling network
-
Q Cui, Z Yu, E.O. Purisima, and E Wang, 'Principles of microRNA regulation of a human cellular signaling network', Mol Syst Biol, 2, 46, (2006).
-
(2006)
Mol Syst Biol
, vol.2
, pp. 46
-
-
Cui, Q.1
Yu, Z.2
Purisima, E.O.3
Wang, E.4
-
7
-
-
84869072363
-
A scalable framework for discovering coherent co-clusters in noisy data
-
Meghana Deodhar, Gunjan Gupta, Joydeep Ghosh, Hyuk Cho, and Inderjit S. Dhillon, 'A scalable framework for discovering coherent co-clusters in noisy data', in Proc. of ICML'09, p. 31, (2009).
-
(2009)
Proc. of ICML'09
, pp. 31
-
-
Deodhar, M.1
Gupta, G.2
Ghosh, J.3
Cho, H.4
Dhillon, I.S.5
-
8
-
-
0035789644
-
Co-clustering documents and words using bipartite spectral graph partitioning
-
I. S. Dhillon, 'Co-clustering documents and words using bipartite spectral graph partitioning', in Proc. of SIGKDD'01, pp. 269-274, (2001).
-
(2001)
Proc. of SIGKDD'01
, pp. 269-274
-
-
Dhillon, I.S.1
-
9
-
-
84945286873
-
RIONA: A classifier combining rule induction and k-NN method with automated selection of optimal neighbourhood
-
LNCS
-
Grzegorz Góra and Arkadiusz Wojna, 'RIONA: A Classifier Combining Rule Induction and k-NN Method with Automated Selection of Optimal Neighbourhood', in ECML'02, LNCS, pp. 111-123, (2002).
-
(2002)
ECML'02
, pp. 111-123
-
-
Góra, G.1
Wojna, A.2
-
10
-
-
0033581285
-
National institutes of health moves ahead with "PubMed central"
-
DS. Greenberg, 'National Institutes of Health moves ahead with "PubMed Central".', Lancet, 9183(354), 1009, (1999).
-
(1999)
Lancet
, vol.9183
, Issue.354
, pp. 1009
-
-
Greenberg, D.S.1
-
11
-
-
0037252684
-
Rfam: An RNA family database
-
S. Griffiths-Jones, A. Bateman, M. Marshall, A. Khanna, and SR. Eddy, 'Rfam: an RNA family database.', Nucleic Acids Res., 1, 439-441, (2003).
-
(2003)
Nucleic Acids Res.
, vol.1
, pp. 439-441
-
-
Griffiths-Jones, S.1
Bateman, A.2
Marshall, M.3
Khanna, A.4
Eddy, S.R.5
-
12
-
-
38549120729
-
MiR-NAMap 2.0: Genomic maps of microRNAs in metazoan genomes
-
S. D. Hsu, C. H. Chu, A. P. Tsou, S. J. Chen, H. C. Chen, P. W. Hsu, Y. H. Wong, Y. H. Chen, G. H. Chen, and H. D. Huang, 'miR-NAMap 2.0: genomic maps of microRNAs in metazoan genomes', Nucleic Acids Res, 36, D165-D169, (2008).
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Hsu, S.D.1
Chu, C.H.2
Tsou, A.P.3
Chen, S.J.4
Chen, H.C.5
Hsu, P.W.6
Wong, Y.H.7
Chen, Y.H.8
Chen, G.H.9
Huang, H.D.10
-
13
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
DW Huang, BT Sherman, and RA Lempicki, 'Systematic and integrative analysis of large gene lists using DAVID Bioinformatics Resources.', Nature Protoc., 1(4), 44-57, (2009).
-
(2009)
Nature Protoc.
, vol.1
, Issue.4
, pp. 44-57
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
14
-
-
0242456822
-
Optimizing search engines using clickthrough data
-
Thorsten Joachims, 'Optimizing search engines using clickthrough data', in Proc. of SIGKDD '02, pp. 133-142, (2002).
-
(2002)
Proc. of SIGKDD '02
, pp. 133-142
-
-
Joachims, T.1
-
15
-
-
0033982936
-
KEGG: Kyoto encyclopedia of genes and genomes
-
M Kanehisa and S. Goto, 'KEGG: Kyoto Encyclopedia of Genes and Genomes.', Nucleic Acids Res., 1(28), 27-30, (2000).
-
(2000)
Nucleic Acids Res.
, vol.1
, Issue.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
16
-
-
0032131147
-
A fast and high quality multilevel scheme for partitioning irregular graphs
-
George Karypis and Vipin Kumar, 'A Fast and High Quality Multilevel Scheme for Partitioning Irregular Graphs', SIAM J. Sci. Comput., 20, 359-392, (1998).
-
(1998)
SIAM J. Sci. Comput.
, vol.20
, pp. 359-392
-
-
Karypis, G.1
Kumar, V.2
-
17
-
-
78651293534
-
MiRBase: Integrating microRNA annotation and deep-sequencing data
-
A. Kozomara and S. Griffiths-Jones, 'miRBase: integrating microRNA annotation and deep-sequencing data', Nucl. Acids Res., 39, D152-D157, (2011).
-
(2011)
Nucl. Acids Res.
, vol.39
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
18
-
-
0037197803
-
Identification of tissue-specific MicroRNAs from mouse
-
M. Lagos-Quintana, R. Rauhut, A. Yalcin, J. Meyer, W. Lendeckel, and T. Tuschl, 'Identification of Tissue-Specific MicroRNAs from Mouse', Current Biology, 12(9), 735-739, (2002).
-
(2002)
Current Biology
, vol.12
, Issue.9
, pp. 735-739
-
-
Lagos-Quintana, M.1
Rauhut, R.2
Yalcin, A.3
Meyer, J.4
Lendeckel, W.5
Tuschl, T.6
-
19
-
-
40349094597
-
MicroRNA-373 induces expression of genes with complementary promoter sequences
-
R.F. Place, L.C. Li, D. Pookot, E.J. Noonan, and R. Dahiya, 'MicroRNA-373 induces expression of genes with complementary promoter sequences', Proc Natl Acad Sci U S A, 105(5), 1608-13, (2008).
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, Issue.5
, pp. 1608-1613
-
-
Place, R.F.1
Li, L.C.2
Pookot, D.3
Noonan, E.J.4
Dahiya, R.5
-
20
-
-
0003120218
-
-
MIT Press, Cambridge, USA
-
John C. Platt, Fast training of support vector machines using sequential minimal optimization, 185-208, MIT Press, Cambridge, USA, 1999.
-
(1999)
Fast Training of Support Vector Machines Using Sequential Minimal Optimization
, pp. 185-208
-
-
Platt, J.C.1
-
21
-
-
33646137384
-
A systematic comparison and evaluation of biclustering methods for gene expression data
-
A. Prelic, S. Bleuler, P. Zimmermann, A. Wille, P. Bühlmann, W. Gruissem, L. Hennig, L. Thiele, and E. Zitzler, 'A systematic comparison and evaluation of biclustering methods for gene expression data', Bioinformatics, 22(9), 1122-1129, (2006).
-
(2006)
Bioinformatics
, vol.22
, Issue.9
, pp. 1122-1129
-
-
Prelic, A.1
Bleuler, S.2
Zimmermann, P.3
Wille, A.4
Bühlmann, P.5
Gruissem, W.6
Hennig, L.7
Thiele, L.8
Zitzler, E.9
-
22
-
-
65349090170
-
MicroRNA and gene expression patterns in the differentiation of human embryonic stem cells
-
J Ren, P. Jin, E. Wang, FM. Marincola, and DF. Stroncek, 'MicroRNA and gene expression patterns in the differentiation of human embryonic stem cells.', J Transl Med., 7(20), (2009).
-
(2009)
J Transl Med.
, vol.7
, Issue.20
-
-
Ren, J.1
Jin, P.2
Wang, E.3
Marincola, F.M.4
Stroncek, D.F.5
-
23
-
-
79955780736
-
Multiple targets of miR-302 and miR-372 promote reprogramming of human fibroblasts to induced pluripotent stem cells
-
D. Subramanyam, S. Lamouille, RL. Judson, JY. Liu, N. Bucay, R. Derynck, and R. Blelloch, 'Multiple targets of miR-302 and miR-372 promote reprogramming of human fibroblasts to induced pluripotent stem cells.', Nat Biotechnol., 29(5), 443-448, (2011).
-
(2011)
Nat Biotechnol.
, vol.29
, Issue.5
, pp. 443-448
-
-
Subramanyam, D.1
Lamouille, S.2
Judson, R.L.3
Liu, J.Y.4
Bucay, N.5
Derynck, R.6
Blelloch, R.7
-
24
-
-
2942534403
-
Human embryonic stem cells express a unique set of microRNAs
-
MR Suh, Y Lee, JY Kim, SK Kim, SH Moon, JY Lee, KY Cha, HM Chung, HS Yoon, SY Moon, VN Kim, and KS Kim, 'Human embryonic stem cells express a unique set of microRNAs.', Dev Biol., 2(270), 488-498, (2004).
-
(2004)
Dev Biol.
, vol.2
, Issue.270
, pp. 488-498
-
-
Suh, M.R.1
Lee, Y.2
Kim, J.Y.3
Kim, S.K.4
Moon, S.H.5
Lee, J.Y.6
Cha, K.Y.7
Chung, H.M.8
Yoon, H.S.9
Moon, S.Y.10
Kim, V.N.11
Kim, K.S.12
-
25
-
-
44149083586
-
MiRDB: A microRNA target prediction and functional annotation database with a wiki interface
-
Xiaowei Wang., 'miRDB: A microRNA target prediction and functional annotation database with a wiki interface.', RNA., 14(6), 1012-1017, (2008).
-
(2008)
RNA
, vol.14
, Issue.6
, pp. 1012-1017
-
-
Wang, X.1
-
26
-
-
34249294856
-
Energizing miRNA research: A review of the role of miRNAs in lipid metabolism, with a prediction that miR-103/107 regulates human metabolic pathways
-
R. Wilfred Bernard, Wang Wang-Xia, and Peter T. Nelson, 'Energizing miRNA research: A review of the role of miRNAs in lipid metabolism, with a prediction that miR-103/107 regulates human metabolic pathways.', Mol Genet Metab, (2007).
-
(2007)
Mol Genet Metab
-
-
Wilfred Bernard, R.1
Wang, W.-X.2
Nelson, P.T.3
-
27
-
-
77955430417
-
Orthogonal nonnegative matrix trifactorization for co-clustering: Multiplicative updates on stiefel manifolds
-
Jiho Yoo and Seungjin Choi, 'Orthogonal nonnegative matrix trifactorization for co-clustering: Multiplicative updates on Stiefel manifolds', Inf. Process. Manage., 46, 559-570, (2010).
-
(2010)
Inf. Process. Manage.
, vol.46
, pp. 559-570
-
-
Yoo, J.1
Choi, S.2
-
28
-
-
34547105794
-
Co-clustering: A versatile tool for data analysis in biomedical informatics
-
Sungroh Yoon, Luca Benini, and Giovanni De Micheli, 'Co-clustering: a versatile tool for data analysis in biomedical informatics.', IEEE Trans. on inf. technology in biomedicine, 11(4), 493-494, (2007).
-
(2007)
IEEE Trans. on Inf. Technology in Biomedicine
, vol.11
, Issue.4
, pp. 493-494
-
-
Yoon, S.1
Benini, L.2
De Micheli, G.3
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