Modified Primers for the Identification of Nonpathogenic Fusarium oxysporum Isolates That Have Biological Control Potential against Fusarium Wilt of Cucumber in Taiwan

PLoS ONE

Volumn 8, Issue 6, 2013, Pages

  Wang, Chaojen ^a   Lin, Yisheng ^b   Lin, Yinghong ^a   Chung, Wenhsin ^a  

^a NATIONAL CHUNG HSING UNIVERSITY   (Taiwan)

^b ASIA UNIVERSITY   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT; PRIMER DNA; RIBOSOME DNA; SPACER DNA;

ARTICLE; BIOASSAY; BIOLOGICAL CONTROL AGENT; CONTROLLED STUDY; CUCUMBER; DNA POLYMORPHISM; DNA SEQUENCE; FUNGAL VIRULENCE; FUNGUS IDENTIFICATION; FUNGUS ISOLATION; FUSARIUM OXYSPORUM; FUSARIUM WILT; GREENHOUSE; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT TISSUE; POLYMERASE CHAIN REACTION; SOIL ORGANISM; TAIWAN; UNINDEXED SEQUENCE;

BASE SEQUENCE; CUCUMIS SATIVUS; DNA PRIMERS; DNA, INTERGENIC; FUSARIUM; MOLECULAR SEQUENCE DATA; PEPTIDE ELONGATION FACTOR 1; PEST CONTROL, BIOLOGICAL; PHYLOGENY; PLANT DISEASES; POLYMERASE CHAIN REACTION; TAIWAN;

BRYOPHYTA; CUCUMIS SATIVUS; FUSARIUM; FUSARIUM OXYSPORUM; FUSARIUM SP.;

EID: 84878764446     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0065093     Document Type: Article

References (46)

1. Gordon TR, Okamoto D, (1990) Colonization of crop residue by Fusarium oxysporum f. sp. melonis and other species of Fusarium. Phytopathology 80: 381-386.
2. Gordon TR, Okamoto D, (1992) Population structure and the relationship between pathogenic and nonpathogenic strains of Fusarium oxysporum. Phytopathology 82: 73-77.
3. Gordon TR, Okamoto D, Milfroom MG, (1992) The structure and interrelationship of fungal populations in native and cultivated soils. Mol Ecol 1: 241-249.
4. Fourie G, Steenkamp E, Ploetz R, Gordon T, Viljoen A, (2011) Current status of the taxonomic position of Fusarium oxysporum formae specialis cubense within the Fusarium oxysporum complex. Infect Genet Evol 11: 533-542.
5. Vakalounkis DJ, Fragkiadakis GA, (1999) Genetic diversity of Fusarium oxysporum isolates from cucumber: Differentiation by pathogenicity, vegetative compatibility, and RAPD fingerprinting. Phytopathology 89: 161-169.
6. Erwin DC (1981) Chemical control. In: Marashall EM, Alois AB, Carl HB, editors. Fungal wilt Disease of Plants. New York: Academic Press. 563-594.
7. Lazarovits G, Tenuta M, Conn KL, (2001) Organic amendments as a disease control strategy for soilborne diseases of high-value agricultural crops. Australasian Plant Pathol 30: 111-117.
8. Fravel D, Olivain C, Alabouvette C, (2003) Research review: Fusarium oxysporum and its biocontrol. New Phytol 157: 493-502.
9. Larkin RP, Fravel DR, (1999) Mechanisms of action and dose-response relationships governing biological control of Fusarium wilt of tomato by nonpathogenic Fusarium spp. Phytopathology 89: 1152-1161.
10. Ogura K, Komada H, (1984) Biological control of Fusarium wilt of sweet potato by nonpathogenic Fusarium oxysporum. Ann Phytopathol Soc Japan 50: 1-9.
11. Lemanceau P, Bakker PA, Kogel WJD, Alabouvette C, Schippers B, (1992) Effect of pseudobactin 358 production by Pseudomonas putida WCS358 on suppression of fusarium wilt of carnations by nonpathogenic Fusarium oxysporum Fo47. Appl Environ Microbiol 58: 2978-2982.
12. Chen JF (1999) Identification of Fusarium wilt of cucumber and screening of nonpathogenic Fusarium oxysporum for the disease control. Taichung. Taiwan, ROC: National Chung Hsing University. Master's thesis.
13. Wang CJ (2006) Study of nonpathogenic Fusarium oxysporum in controlling Fusarium wilt of cucumber and asparagus bean. Taichung. Taiwan, ROC: National Chung Hsing University. Master's thesis.
14. Alabouvette C, Lemanceau P, Steinberg C (1996) Biological control of Fusarium wilts: opportunities for developing a commercial product. In: Hall R, editor. Managing Soilborne Plant Pathogens. Minnesota: APS Press. 192-212.
15. Deacon JW (2006) Fungal genetics, molecular genetics, and genomics. In: Deacon JW, editor. Fungal biology. New York: Blackwell Press. 158-183.
16. Jurado M, Vázquez C, Marín S, Sanchis V, González-Jaéna MT, (2006) PCR-based strategy to detect contamination with mycotoxigenic Fusarium species in maize. Syst Appl Microbiol 29: 681-689.
17. Schilling AG, Möller EM, Geiger HH, (1996) Polymerase chain reaction-based assays for species-specific detection of Fusarium culmorum, F. graminearum, and F. avenaceum. Phytopathology 86: 515-523.
18. Wilson A, Simpson D, Chandler E, Jennings P, Nicholson P, (2004) Development of PCR assays for the detection and differentiation of Fusarium sporotrichioides and Fusarium langsethiae. FEMS Microbiol Lett 233: 69-76.
19. Yergeau E, Filion M, Vujanovic V, St-Arnaud M, (2005) A PCR-denaturing gradient gel electrophoresis approach to assess Fusarium diversity in asparagus. J Microbiol Methods 60: 143-154.
20. Lievens B, Rep M, Thomma BPHJ, (2008) Recent developments in the molecular discrimination of formae speciales of Fusarium oxysporum. Pest Manag Sci 64: 781-788.
21. Lin YH, Chang JY, Liu ET, Chao CP, Huang JW, et al. (2009) Development of molecular marker for specific detection of Fusarium oxysporum f. sp. cubense race 4. Eur J Plant Pathol 123: 353-365.
22. Dissanayake MLMC, Kashima R, Tanaka S, Ito S, (2009) Pathogenic variation and molecular characterization of Fusarium species isolated from wilted Welsh onion in Japan. J Gen Plant Pathol 75: 37-45.
23. Edel-Hermann V, Gautheron N, Steinberg C, (2012) Genetic diversity of Fusarium oxysporum and related species pathogenic on tomato in Algeria and other Mediterranean countries. Plant Pathol 61: 787-800.
24. Kawabe M, Katsube K, Yoshida T, Arie T, Tsuchiya K, (2007) Genetic diversity of Fusarium oxysporum f. sp. spinaciae in Japan based on phylogenetic analyses of rDNA-IGS and MAT1 sequences. J Gen Plant Pathol 73: 353-359.
25. Lori G, Edel-Hermann V, Gautheron N, Alabouvette C, (2004) Genetic diversity of pathogenic and nonpathogenic populations of Fusarium oxysporum isolated from carnation fields in Argentina. Phytopathology 94: 661-668.
26. Srinivasan K, Spadaro D, Poli A, Gilardi G, Gullino ML, et al. (2012) Genetic diversity and pathogenicity of Fusarium oxysporum isolated from wilted rocket plants in Italy. Phytoparasitica 40: 157-170.
27. Appel DJ, Gordon TR, (1996) Relationships among pathogenic and nonpathogenic isolates of Fusarium oxysporum based on the partial sequence of the intergenic spacer region of the ribosomal DNA. Mol Plant-Microbe Interact 9: 125-138.
28. Nash SM, Snyder WC, (1962) Quantitative estimation by plate counts of propagules of the bean root rot Fusarium in field soils. Phytopathology 52: 567-572.
29. Saitoh K, Togashi K, Arie T, Teraoka T, (2006) A simple method for a mini-preparation of fungal DNA. J Gen Plant Pathol 72: 348-350.
30. Kawabe M, Kobayashi Y, Okada G, Yamaguchi I, Teraoka T, et al. (2005) Three evolutionary lineages of tomato wilt pathogen, Fusarium oxysporum f. sp. lycopersici, based on sequences of IGS, MAT1, and pg1, are each composed of isolates of a single mating type and a single or closely related vegetative compatibility group. J Gen Plant Pathol 71: 263-272.
31. Scher FM, Baker R, (1982) Effect of Pseudomonas putida and a synthetic iron chelator on induction of soil suppressiveness to Fusarium wilt pathogens. Phytopathology 72: 1567-1573.
32. O'Donnell K, Sutton DA, Rinaldi MG, Magnon KC, Cox PA, et al. (2004) Genetic diversity of human pathogenic members of the Fusarium oxysporum complex inferred from multilocus DNA sequence data and amplified fragment length polymorphism analyses: evidence for the recent dispersion of a geographically widespread clonal lineage and nosocomial origin. J Clin Microbiol 42: 5109-5120.
33. Ortoneda M, Guarro J, Madrid MP, Caracuel Z, Roncero MIG, et al. (2004) Fusarium oxysporum as a multihost model for the genetic dissection of fungal virulence in plants and mammals. Infect Immunity 72: 1760-1766.
34. Mbofung GY, Hing SG, Pryor BM, (2007) Phylogeny of Fusarium oxysporum f. sp. lactucae Inferred from Mitochondrial Small Subunit, Elongation Factor 1-alpha, and Nuclear Ribosomal Intergenic Spacer Sequence Data. Phytopathology 97: 87-98.
35. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG, (1997) The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
36. Rambaut A (2000) Se-Al: Sequence Alignment Editor. Oxford, UK: Department of Zoology, University of Oxford.
37. Kimura M, (1980) A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111-120.
38. Felsenstein J, (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
39. Appel DJ, Gordon TR, (1995) Intraspecific variation within populations of Fusarium oxysporum based on RFLP analysis of the intergenic spacer (IGS) region of the rDNA. Exp Mycol 19: 120-128.
40. Recorbet G, Steinberg C, Olivain C, Edel V, Trouvelot S, et al. (2003) Wanted: pathogenesis-related marker molecules for Fusarium oxysporum. New Phytol 159: 73-92.
41. Gorokhova E, Dowling TE, Weider LJ, Crease TJ, Elser JJ, (2002) Functional and ecological significance of rDNA intergenic spacer variation in a clonal organism under divergent selection for production rate. Proc Biol Sci 269: 2373-2379.
42. Zhang Z, Yuen GY, Sarath G, Penheiter AR, (2001) Chitinases from the plant disease biocontrol agent, Stenotrophomonas maltophilia C3. Phytopathology 91: 204-211.
43. Xu XM, Jeffries P, Paurasso M, Jeger MJ, (2011) Combined Use of Biocontrol Agents to Manage Plant Diseases in Theory and Practive. Phytopathology 101: 1024-1031.
44. Guetsky R, Shtienberg D. Elad Y, Fischer E, Dinoor A, (2002) Improving biological control by combining biocontrol agents each with several mechanisms of disease suppression. Phytopathology 92: 976-985.
45. Ma LJ, van der Does HC, Borkovich KA, Coleman JJ, Daboussi MJ, et al. (2010) Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium. Nature 464: 367-373.
46. O'Donnell K, Gueidan C, Sink S, Johnston PR, Crous PW, et al. (2009) A two-locus DNA sequence database for typing plant and human pathogens within the Fusarium oxysporum species complex. Fungal Genet Biol 46: 936-948.