메뉴 건너뛰기




Volumn 4, Issue , 2013, Pages

Stimuli-responsive selection of target DNA sequences by synthetic bZIP peptides

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVATING TRANSCRIPTION FACTOR; BASIC LEUCINE ZIPPER TRANSCRIPTION FACTOR; CYCLIC AMP RESPONSIVE ELEMENT BINDING PROTEIN; DIMER; DISULFIDE; MONOMER;

EID: 84878677820     PISSN: None     EISSN: 20411723     Source Type: Journal    
DOI: 10.1038/ncomms2825     Document Type: Article
Times cited : (33)

References (44)
  • 2
    • 0035252680 scopus 로고    scopus 로고
    • Transcription factors: Global and detailed views
    • DOI 10.1016/S0959-440X(00)00163-9
    • Muller, C. W. Transcription factors: global and detailed views. Curr. Opin. Struct. Biol. 11, 26-32 (2001) (Pubitemid 32155548)
    • (2001) Current Opinion in Structural Biology , vol.11 , Issue.1 , pp. 26-32
    • Muller, C.W.1
  • 3
    • 33746288394 scopus 로고    scopus 로고
    • Small molecule modulators of transcription
    • DOI 10.1002/anie.200600285
    • Arndt, H. -D. Small molecule modulators of transcription. Angew. Chem. Int. Ed. 45, 4552-4560 (2006) (Pubitemid 44106070)
    • (2006) Angewandte Chemie - International Edition , vol.45 , Issue.28 , pp. 4552-4560
    • Arndt, H.-D.1
  • 4
    • 0037472782 scopus 로고    scopus 로고
    • Modulation of DNA-binding domains for sequence-specific DNA recognition
    • DOI 10.1016/S0378-1119(02)01207-6
    • Marmorstein, R. & Fitzgerald, M. X. Modulation of DNA-binding domains for sequence-specific DNA recognition. Gene 304, 1-12 (2003) (Pubitemid 36140127)
    • (2003) Gene , vol.304 , Issue.1-2 , pp. 1-12
    • Marmorstein, R.1    Fitzgerald, M.X.2
  • 6
    • 0032848185 scopus 로고    scopus 로고
    • Combinatorial gene regulation by eukaryotic transcription factors
    • DOI 10.1016/S0959-440X(99)80007-4
    • Chen, L. Combinatorial gene regulation by eukaryotic transcription factors. Curr. Opin. Struct. Biol. 9, 48-55 (1999) (Pubitemid 29471975)
    • (1999) Current Opinion in Structural Biology , vol.9 , Issue.1 , pp. 48-55
    • Chen, L.1
  • 9
    • 0035930331 scopus 로고    scopus 로고
    • Recognition of specific DNA sequences
    • DOI 10.1016/S1097-2765(01)00392-6
    • Garvie, C. W. & Wolberger, C. Recognition of specific DNA sequences. Mol. Cell. 8, 937-946 (2001) (Pubitemid 34031797)
    • (2001) Molecular Cell , vol.8 , Issue.5 , pp. 937-946
    • Garvie, C.W.1    Wolberger, C.2
  • 10
    • 0033785699 scopus 로고    scopus 로고
    • Structural basis for the diversity of DNA recognition by bZIP transcription factors
    • Fujii, Y., Shimizu, T., Toda, T., Yanagida, M. & Hakoshima, T. Structural basis for the diversity of DNA recognition by bZIP transcription factors. Nat. Struct. Biol. 7, 889-893 (2000)
    • (2000) Nat. Struct. Biol , vol.7 , pp. 889-893
    • Fujii, Y.1    Shimizu, T.2    Toda, T.3    Yanagida, M.4    Hakoshima, T.5
  • 11
    • 0041305991 scopus 로고    scopus 로고
    • Regulating transcription: A chemical perspective
    • Mapp, A. K. Regulating transcription: a chemical perspective. Org. Biomol. Chem. 1, 2217-2220 (2003)
    • (2003) Org. Biomol. Chem , vol.1 , pp. 2217-2220
    • Mapp, A.K.1
  • 13
    • 1542580471 scopus 로고    scopus 로고
    • From transcription factors to designed sequence-specific DNA-binding peptides
    • Va'zquez Senti's, M. E., Caamano, A. M. & Mascarenas, J. L. From transcription factors to designed sequence-specific DNA-binding peptides. Chem. Soc. Rev. 32, 338-349 (2003) (Pubitemid 38353225)
    • (2003) Chemical Society Reviews , vol.32 , Issue.6 , pp. 338-349
    • Eugenio Vazquez, M.1    Caamano, A.M.2    Mascarenas, J.L.3
  • 14
    • 0024988083 scopus 로고
    • Sequence-specific DNA binding by a short peptide dimer
    • Talanian, R. V., McKnight, C. J. & Kim, P. S. Sequence-specific DNA binding by a short peptide dimer. Science 249, 769-771 (1990)
    • (1990) Science , vol.249 , pp. 769-771
    • Talanian, R.V.1    McKnight, C.J.2    Kim, P.S.3
  • 15
    • 0026687589 scopus 로고
    • Minimum length of a sequence-specific DNA binding peptide
    • Talanian, R. V., McKnight, C. J., Rutkowski, R. & Kim, P. S. Minimum length of a sequence-specific DNA binding peptide. Biochemistry 31, 6871-6875 (1992)
    • (1992) Biochemistry , vol.31 , pp. 6871-6875
    • Talanian, R.V.1    McKnight, C.J.2    Rutkowski, R.3    Kim, P.S.4
  • 16
    • 0027818119 scopus 로고
    • Arranging quaternary structure of peptides by cyclodextrin-guest inclusion complex: Sequence-specific DNA binding by a peptide dimer with artificial dimerization module
    • Ueno, M., Murakami, A., Makino, K. & Morii, T. Arranging quaternary structure of peptides by cyclodextrin-guest inclusion complex: sequencespecific DNA binding by a peptide dimer with artificial dimerization module. J. Am. Chem. Soc. 115, 12575-12576 (1993) (Pubitemid 24078359)
    • (1993) Journal of the American Chemical Society , vol.115 , Issue.26 , pp. 12575-12576
    • Ueno, M.1    Murakami, A.2    Makino, K.3    Morii, T.4
  • 17
    • 0027339727 scopus 로고
    • Altered specificty of DNA-binding proteins with transition metal dimerization domains
    • Cuenoud, B. & Schepartz, A. Altered specificity of DNA-binding proteins with transition metal dimerization domains. Science 259, 510-513 (1993) (Pubitemid 23058707)
    • (1993) Science , vol.259 , Issue.5094 , pp. 510-513
    • Cuenoud, B.1    Schepartz, A.2
  • 20
    • 69549122587 scopus 로고    scopus 로고
    • Cobalt(II responsive DNA binding of a GCN4-bZIP protein containing cysteine residues functionalized with iminodiacetic acid
    • Azuma, Y., Imanishi, M., Yoshimura, T., Kawabata, T. & Futaki, S. Cobalt(II)- responsive DNA binding of a GCN4-bZIP protein containing cysteine residues functionalized with iminodiacetic acid. Angew. Chem. Int. Ed. 48, 6853-6856 (2009)
    • (2009) Angew. Chem. Int. Ed , vol.48 , pp. 6853-6856
    • Azuma, Y.1    Imanishi, M.2    Yoshimura, T.3    Kawabata, T.4    Futaki, S.5
  • 23
    • 84864141034 scopus 로고    scopus 로고
    • In vivo light-driven DNA binding and cellular uptake of nucleic acid stains
    • Sa'nchez, M. I. et al. In vivo light-driven DNA binding and cellular uptake of nucleic acid stains. ACS Chem. Biol. 7, 1276-1280 (2012)
    • (2012) ACS Chem. Biol , vol.7 , pp. 1276-1280
    • Sa'Nchez, M.I.1
  • 25
    • 0027049805 scopus 로고
    • The GCN4 basic region leucine zipper binds DNA as a dimer of uninterrupted α helices: Crystal structure of the protein-DNA complex
    • DOI 10.1016/S0092-8674(05)80070-4
    • Ellenberger, T. E., Brandl, C. J., Struhl, K. & Harrison, S. C. The GCN4 basic region leucine zipper binds DNA as a dimer of uninterrupted alpha helices: crystal structure of the protein-DNA complex. Cell 71, 1223-1237 (1992) (Pubitemid 23016556)
    • (1992) Cell , vol.71 , Issue.7 , pp. 1223-1237
    • Ellenberger, T.E.1    Brandl, C.J.2    Struhl, K.3    Harrison, S.C.4
  • 26
    • 0027377202 scopus 로고
    • The X-ray structure of the GCN4-bZIP bound to ATF-CREB site DNA shows the complex depends on DNA flexibility
    • DOI 10.1006/jmbi.1993.1490
    • Konig, P. & Richmond, T. J. The X-ray structure of the GCN4-bZIP bound to ATF/CREB site DNA shows the complex depends on DNA flexibility. J. Mol. Biol. 233, 139-154 (1993) (Pubitemid 23288917)
    • (1993) Journal of Molecular Biology , vol.233 , Issue.1 , pp. 139-154
    • Konig, P.1    Richmond, T.J.2
  • 27
    • 0029563634 scopus 로고
    • Crystal structure of a bZIP/DNA complex at 2.2 A: Determinants of DNA specific recognition
    • DOI 10.1006/jmbi.1995.0645
    • Keller, W., Konig, P. & Richmond, T. J. Crystal structure of a bZIP/DNA complex at 2.2A: determinants of DNA specific recognition. J. Mol. Biol. 254, 657-667 (1995) (Pubitemid 26001798)
    • (1995) Journal of Molecular Biology , vol.254 , Issue.4 , pp. 657-667
    • Keller, W.1    Konig, P.2    Richmond, T.J.3
  • 28
    • 0041412710 scopus 로고    scopus 로고
    • A synthetic miniprotein that binds specific DNA sequences by contacting both the major and the minor groove
    • DOI 10.1016/S1074-5521(03)00172-8
    • Blanco, J. B., Va'zquez, M. E., Marti'nez-Costas, J. M., Castedo, L. & Mascarenas, J. L. A synthetic miniprotein that binds specific DNA sequences by contacting both the major and the minor groove. Chem. Biol. 10, 713-722 (2003) (Pubitemid 37089846)
    • (2003) Chemistry and Biology , vol.10 , Issue.8 , pp. 713-722
    • Blanco, J.B.1    Vazquez, M.E.2    Martinez-Costas, J.3    Castedo, L.4    Mascarenas, J.L.5
  • 29
    • 0035905505 scopus 로고    scopus 로고
    • Design and synthesis of a peptide that binds specific DNA sequences through simultaneous interaction in the major and in the minor groove
    • DOI 10.1002/1521-3773(20011217)40:24 <4723::AID-ANIE4723>3.0.CO;2-L
    • Vazquez, M. E., Caamano, A. M., Martinez-Costas, J., Castedo, L. & Mascarenas, J. L. Design and synthesis of a peptide that binds specific DNA sequences through simultaneous interaction in the major and in the minor groove. Angew. Chem. Int. Ed. 40, 4723-4725 (2001) (Pubitemid 34032218)
    • (2001) Angewandte Chemie - International Edition , vol.40 , Issue.24 , pp. 4723-4725
    • Vazquez, M.E.1    Caamano, A.M.2    Martinez-Costas, J.3    Castedo, L.4    Mascarenas, J.L.5
  • 30
    • 0033612729 scopus 로고    scopus 로고
    • Highly specific DNA recognition by a designed miniature protein [2]
    • DOI 10.1021/ja990968z
    • Zondlo, N. J. & Schepartz, A. Highly specific DNA recognition by a designed miniature protein. J. Am. Chem. Soc. 121, 6938-6939 (1999) (Pubitemid 29374495)
    • (1999) Journal of the American Chemical Society , vol.121 , Issue.29 , pp. 6938-6939
    • Zondlo, N.J.1    Schepartz, A.2
  • 31
    • 0037026871 scopus 로고    scopus 로고
    • Sequence-specific recognition of DNA by hydrophobic, alanine-rich mutants of the basic region/leucine zipper motif investigated by fluorescence anisotropy
    • DOI 10.1002/bip.10205
    • Bird, G. H., Lajmi, A. R. & Shin, J. A. Sequence-specific recognition of DNA by hydrophobic, alanine-rich mutants of the basic region/leucine zipper motif investigated by fluorescence anisotropy. Biopolymers 65, 10-20 (2002) (Pubitemid 35000889)
    • (2002) Biopolymers , vol.65 , Issue.1 , pp. 10-20
    • Bird, G.H.1    Lajmi, A.R.2    Shin, J.A.3
  • 32
    • 0030018752 scopus 로고    scopus 로고
    • Artificial sequence-specific DNA binding peptides: Branched-chain basic regions
    • DOI 10.1021/ja9528083
    • Pellegrini, M. & Ebright, R. Artificial sequence-specific DNA binding peptides: branched-chain basic regions. J. Am. Chem. Soc. 118, 5831-5835 (1996) (Pubitemid 26236801)
    • (1996) Journal of the American Chemical Society , vol.118 , Issue.25 , pp. 5831-5835
    • Pellegrini, M.1    Ebright, R.H.2
  • 35
    • 0035923407 scopus 로고    scopus 로고
    • A GCN4 variant with a C-terminal basic region binds to DNA with wild-type affinity
    • DOI 10.1021/bi011088b
    • Hollenbeck, J. J., Gurnon, D. G., Fazio, G. C., Carlson, J. J. & Oakley, M. G. A GCN4 variant with a c-terminal basic region binds to DNA with wild-type affinity. Biochemistry 40, 13833-13839 (2001) (Pubitemid 33078851)
    • (2001) Biochemistry , vol.40 , Issue.46 , pp. 13833-13839
    • Hollenbeck, J.J.1    Gurnon, D.G.2    Fazio, G.C.3    Carlson, J.J.4    Oakley, M.G.5
  • 36
    • 0030910835 scopus 로고    scopus 로고
    • Factors governing the sequence-selective DNA binding of geometrically constrained peptide dimers
    • DOI 10.1021/ja963280k, PII S0002786396032805
    • Morii, T., Saimei, Y., Okagami, M., Makino, K. & Sugiura, Y. Factors governing the sequence-selective DNA binding of geometrically constrained peptide dimers. J. Am. Chem. Soc. 119, 3649-3655 (1997) (Pubitemid 27234366)
    • (1997) Journal of the American Chemical Society , vol.119 , Issue.16 , pp. 3649-3655
    • Morii, T.1    Saimei, Y.2    Okagami, M.3    Makino, K.4    Sugiura, Y.5
  • 37
    • 0028533280 scopus 로고
    • Distribution of labor among bZIP segments in the control of DNA affinity and specificity
    • Metallo, S. J. & Schepartz, A. Distribution of labor among bZIP segments in the control of DNA affinity and specificity. Chem. Biol. 1, 143-151 (1994)
    • (1994) Chem. Biol , vol.1 , pp. 143-151
    • Metallo, S.J.1    Schepartz, A.2
  • 38
    • 0034732899 scopus 로고    scopus 로고
    • GCN4 binds with high affinity to DNA sequences containing a single consensus half-site
    • DOI 10.1021/bi992705n
    • Hollenbeck, J. J. & Oakley, M. G. GCN4 binds with high affinity to DNA sequences containing a single consensus half-site. Biochemistry 39, 6380-6389 (2000) (Pubitemid 30347143)
    • (2000) Biochemistry , vol.39 , Issue.21 , pp. 6380-6389
    • Hollenbeck, J.J.1    Oakley, M.G.2
  • 39
    • 0028957767 scopus 로고
    • Preparation of the very acid-sensitive Fmoc-Lys(Mtt)-OH. Application in the synthesis of sidechain to side-chain cyclic peptides and oligolysine cores suitable for the solidphase assembly of MAPs and TASPs. Int
    • Aletras, A., Barlos, K., Gatos, D., Koutsogianni, S. & Mamos, P. Preparation of the very acid-sensitive Fmoc-Lys(Mtt)-OH. Application in the synthesis of sidechain to side-chain cyclic peptides and oligolysine cores suitable for the solidphase assembly of MAPs and TASPs. Int. J. Pept. Protein Res. 45, 488-496 (1995)
    • (1995) J. Pept. Protein Res , vol.45 , pp. 488-496
    • Aletras, A.1    Barlos, K.2    Gatos, D.3    Koutsogianni, S.4    Mamos, P.5
  • 40
    • 0030657857 scopus 로고    scopus 로고
    • Use of Alloc-amino acids in solid-phase peptide synthesis. Tandem deprotection-coupling reactions using neutral conditions
    • DOI 10.1016/S0040-4039(97)01690-0, PII S0040403997016900
    • Thieriet, N., Alsina, J., Giralt, E., Guibe, F. & Albericio, F. Use of alloc-amino acids in solid-phase peptide synthesis. Tandem deprotection-coupling reactions using neutral conditions. Tetrahedron Lett. 38, 7275-7278 (1997) (Pubitemid 27454234)
    • (1997) Tetrahedron Letters , vol.38 , Issue.41 , pp. 7275-7278
    • Thieriet, N.1    Alsina, J.2    Giralt, E.3    Guibe, F.4    Albericio, F.5
  • 41
    • 0014592230 scopus 로고
    • Computed circular dichroism spectra for the evaluation of protein conformation
    • Greenfield, N. J. & Fasman, G. D. Computed circular dichroism spectra for the evaluation of protein conformation. Biochemistry 8, 4108-4116 (1969)
    • (1969) Biochemistry , vol.8 , pp. 4108-4116
    • Greenfield, N.J.1    Fasman, G.D.2
  • 42
    • 0029987812 scopus 로고    scopus 로고
    • A comparison of measured and calculated single- and double-stranded oligodeoxynucleotide extinction coefficients
    • DOI 10.1006/abio.1996.0141
    • Kallansrud, G. B. & Ward, B. A comparison of measured and calculated singleand double-stranded oligodeoxynucleotide extinction coefficients. Anal. Biochem. 236, 134-138 (1996) (Pubitemid 26100735)
    • (1996) Analytical Biochemistry , vol.236 , Issue.1 , pp. 134-138
    • Kallansrud, G.1    Ward, B.2
  • 43
    • 0017157455 scopus 로고
    • A new micro-test for the detection of incomplete coupling reactions in solid-phase peptide synthesis using 2 ,4,6-trinitrobenzenesulphonic acid
    • Hancock, W. & Battersby, J. A new micro-test for the detection of incomplete coupling reactions in solid-phase peptide synthesis using 2,4,6-trinitrobenzenesulphonic acid. Anal. Biochem. 71, 260-264 (1976)
    • (1976) Anal. Biochem , vol.71 , pp. 260-264
    • Hancock, W.1    Battersby, J.2
  • 44
    • 0031148911 scopus 로고    scopus 로고
    • New coupling reagents for the preparation of disulfide cross-linked conjugates with increased stability
    • DOI 10.1021/bc970025w
    • Arpicco, S., Dosio, F., Brusa, P., Crosasso, P. & Cattel, L. New coupling reagents for the preparation of disulfide cross-linked conjugates with increased stability. Bioconjugate Chem. 8, 327-337 (1997). (Pubitemid 27236497)
    • (1997) Bioconjugate Chemistry , vol.8 , Issue.3 , pp. 327-337
    • Arpicco, S.1    Dosio, F.2    Brusa, P.3    Crosasso, P.4    Cattel, L.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.