Identification of differential expressed proteins and characterization their mRNA expression in thermally stressed Apostichopus japonicus

Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics

Volumn 8, Issue 3, 2013, Pages 194-200

  Zhang, Peng ^a   Lu, Yali ^a   Li, Chenghua ^a   Su, Xiurong ^a   Wang, Zhonghua ^a   Jin, Chunhua ^a   Li, Ye ^a   Li, Taiwu ^b  

^a NINGBO UNIVERSITY   (China)

^b Ningbo City College of Vocational Technology   (China)

Author keywords

Apostichopus japonicus; Thermal stress; Two dimensional gel electrophoresis

Indexed keywords

COLLAGEN; CYTOSKELETON PROTEIN; FERRITIN; NECTIN 1; PROTEIN DISULFIDE ISOMERASE; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATE SYNTHASE; YOLK PROTEIN;

APOSTICHOPUS JAPONICUS; ARTICLE; CALCIUM HOMEOSTASIS; COMPARATIVE STUDY; CONTROLLED STUDY; ENERGY METABOLISM; EXTRACELLULAR MATRIX; GENE EXPRESSION; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN METABOLISM; PROTEOMICS; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; TANDEM MASS SPECTROMETRY; TEMPERATURE STRESS; THERMAL EXPOSURE; TWO DIMENSIONAL ELECTROPHORESIS;

APOSTICHOPUS JAPONICUS; HOLOTHUROIDEA;

EID: 84878659672     PISSN: 1744117X     EISSN: 18780407     Source Type: Journal    
DOI: 10.1016/j.cbd.2013.05.001     Document Type: Article

References (55)

1. N. Ahsan, T. Donnart, M.Z. Nouri, and S. Komatsu Tissue-specific defense and thermo-adaptive mechanisms of soybean seedlings under heat stress revealed by proteomic approach J. Proteome Res. 9 8 2010 4189 4204
2. S.C. Andrews, P. Arosio, W. Bottke, J.F. Briat, M. Von Darl, P.M. Harrison, H.P. Laulhere, S. Levi, S. Lobreaux, and S.J. Yewdall Structure, function and evolution of ferritin J. Inorg. Biochem. 47 1992 161 174
3. P. Arosio, and S. Levi Ferritin, iron homeostasis, and oxidative damage Free Radic. Biol. Med. 33 4 2002 457 463
4. J.P. Barry, C.H. Baxter, R.D. Sagarin, and S.E. Gilman Climate-related, long-term faunal changes in a California rocky intertidal community Science 267 1995 672 675
5. T.R. Bonnett, J.A. Robert, C. Pitt, J.D. Fraser, C.I. Keeling, J. Bohlmann, and D.P. Huber Global and comparative proteomic profiling of overwintering and developing mountain pine beetle, Dendroctonus ponderosae (Coleoptera: Curculionidae), larvae Insect Biochem. Mol. Biol. 42 12 2012 890 901
6. G. Chen, T.G. Gharib, C.C. Huang, J.M. Taylor, D.E. Misek, S.L. Kardia, T.J. Giordano, M.D. Iannettoni, M.B. Orringer, S.M. Hanash, and D.G. Beer Discordant protein and mRNA expression in lung adenocarcinomas Mol. Cell Proteomics 1 4 2002 304 313
7. X. Chen, Z. Wu, S. Yu, S. Wang, and X. Peng Beta2-microglobulin is involved in the immune response of large yellow croaker to Aeromonas hydrophila: a proteomic based study Fish Shellfish Immunol. 28 2010 151 158
8. G. Chen, C. Zhang, C. Li, C. Wang, Z. Xu, and P. Yan Haemocyte protein expression profiling of scallop Chlamys farreri response to acute viral necrosis virus (AVNV) infection Dev. Comp. Immunol. 806 35 2011 1135 1145
9. D. Chin, and A.R. Means Calmodulin: a prototypical calcium sensor Trends Cell Biol. 10 2000 322 328
10. W.R. Ellington Evolution and physiological roles of phosphagen systems Annu. Rev. Physiol. 63 2001 289 325
11. P.A. Fields, M.J. Zuzow, and L. Tomanek Proteomic responses of blue mussel (Mytilus) congeners to temperature acclimation J. Exp. Biol. 215 2012 1106 1116
12. R.B. Freedman, T.R. Hirst, and M.F. Tuite Protein disulphide isomerase: building bridges in protein folding Trends Biochem. Sci. 19 1994 331 336
13. B. Futcher, G.I. Latter, P. Monardo, C.S. McLaughlin, and J.I. Garrels A sampling of the yeast proteome Mol. Cell. Biol. 19 11 1999 7357 7368
14. P. Gelebart, M. Opas, and M. Michalak Calreticulin, a Ca2 + -binding chaperone of the endoplasmic reticulum Int. J. Biochem. Cell Biol. 37 2005 260 266
15. S.F. Göthel, and M.A. Marahiel Peptidyl-prolyl cis-trans isomerases, a superfamily of ubiquitous folding catalysts Cell Mol. Life Sci. 55 1999 423 436
16. P.M. Harrison, and P. Arosio The ferritins: molecular properties, iron storage function and cellular regulation Biochim. Biophys. Acta 12 1996 161 203
17. D.A. Hickey, and G.A. Singer Genomic and proteomic adaptations to growth at high temperature Genome Biol. 5 10 2004 117
18. P.W. Hochachka, and G.N. Somero Temperature, biochemical adaptation: mechanism and process in physiological evolution 2002 Oxford University Press New York, NY, USA 290 449
19. C. Hogstrand, S. Balesaria, and C.N. Glover Application of genomics and proteomics for study of the integrated response to zinc exposure in a non-model fish species, the rainbow trout Comp. Biochem. Physiol. B 133 2002 523 535
20. P. Huan, H. Wang, B. Dong, and B. Liu Identification of differentially expressed proteins involved in the early larval development of the Pacific oyster Crassostrea gigas J. Proteomics 75 2012 3855 3865
21. B. Huang, and C. Xu Identification and characterization of proteins associated with plant tolerance to heat stress J. Integr. Plant Biol. 50 10 2008 1230 1237
22. IPCC Summary for Policymakers S. Solomon, D. Qin, M. Manning, Z. Chen, M. Marquis, K.B. Averyt, M. Tignor, H.L. Miller, Climate change 2007: The physical science basis 2007 United Kingdom and New York, NY, USA, Cambridge University Press, Cambridge Contribution of working group I to the fourth assessment report of the intergovernmental panel on climate change
23. T. Ji, Y. Dong, and S. Dong Growth and physiological responses in the sea cucumber, Apostichopus japonicus Selenka: aestivation and temperature Aquaculture 283 2008 180 187
24. Y. Liu, F. Li, B. Song, H. Sun, X. Zhang, and B. Gu Study on aestivating habit of sea cucumber Apostichopus japonicus Selenka: 1. Ecological characteristic of aestivation J. Fish Sci. 3 1996 41 48
25. H. Liu, F. Zheng, X. Sun, X. Hong, S. Dong, B. Wang, X. Tang, and Y. Wang Identification of the pathogens associated with skin ulceration and peristome tumescence in cultured sea cucumber Apostichopus japonicus (Selenka) J. Invertebr. Pathol. 105 2010 236 242
26. Y. Lu, P. Zhang, C. Li, X. Su, C. Jin, Y. Li, and T. Li Characterisation of immune-related gene expression in clam (Venerupis philippinarum) under exposure to di(2-ethylhexyl) phthalate Fish Shellfish Immunol. 34 1 2013 142 146
27. Y. Luo, S. Weng, Q. Wang, X. Shi, C. Dong, Q. Lu, X. Yu, and J. He Tiger frog virus can infect zebrafish cells for studying up- or down-regulated genes by proteomics approach Virus Res. 144 2009 171 179
28. V. Matranga, G. Toia, R. Bonaventura, and W,E. Müller Cellular and biochemical responses to environmental and experimentally induced stress in sea urchin coelomocytes Cell Stress Chaperones 5 2 2000 113 120
29. R.C. May, and L.M. Machesky Phagocytosis and the actin cytoskeleton J. Cell Sci. 114 2001 1061 1077
30. B. McDonagh, and D. Sheehan Effect of oxidative stress on protein thiols in the blue mussel Mytilus edulis: proteomic identification of target proteins Proteomics 7 2007 3395 3403
31. N. Mieszkowska, M.A. Kendall, S.J. Hawkins, R. Leaper, P. Williamson, N.J. Hardman-Mountford, and A.J. Southward Changes in the range of some common rocky shore species in Britain - a response to climate change? Hydrobiologia 555 2006 241 251
32. L. Serafini, J.B. Hann, D. Kültz, and L. Tomanek The proteomic response of sea squirts (genus Ciona) to acute heat stress: a global perspective on the thermal stability of proteins Comp. Biochem. Physiol. D 6 2011 322 334
33. J.L. Shepard, and B.P. Bradley Protein expression signatures and lysosomal stability in Mytilus edulis exposed to graded copper concentrations Mar. Environ. Res. 50 2000 457 463
34. F. Silvestre, J.F. Dierick, V. Dumont, M. Dieu, M. Raes, and P. Devos Differential protein expression profiles in anterior gills of Eriocheir sinensis during acclimation to cadmium Aquat. Toxicol. 76 2006 46 58
35. F. Silvestre, J. Linares-Casenave, S.I. Doroshov, and D. Kültz A proteomic analysis of green and white sturgeon larvae exposed to heat stress and selenium; Sci Total Environ. 408 2010 3176 3188
36. J.G. Sørensen, T.N. Kristensen, and V. Loeschcke The evolutionary and ecological role of heat shock proteins Ecol. Lett. 6 2003 1025 1037
37. F.C. Stevens Calmodulin: an introduction Can. J. Biochem. Cell Biol. 61 1983 906 910
38. X. Sui The main factors influencing the larval development and survival rate of the sea cucumber Oceanol. Limnol. Sin. 20 1989 314 321
39. E.C. Theil Ferritin: structure, gene regulation, and cellular function in animals, plants, and microorganisms Annu. Rev. Biochem. 56 1987 289 315
40. M.A.S. Thorne, M.R. Worland, R. Feret, M.J. Deery, K.S. Lilley, and M.S. Clark Proteomics of cryoprotective dehydration in Megaphorura arctica Tullberg 1876 (Onychiuridae: Collembola) Insect Mol. Biol. 20 3 2011 303 310
41. L. Tomanek Variation in the heat shock response and its implication for predicting the effect of global climate change on species bioegographic distribution ranges and metabolic costs J. Exp. Biol. 213 2010 971 979
42. L. Tomanek, and M.J. Zuzow The proteomic response of the mussel congeners Mytilus galloprovincialis and M. trossulus to acute heat stress: implications for thermal tolerance limits and metabolic costs of thermal stress J. Exp. Biol. 213 2010 3559 3574
43. B.P. Tu, and J.S. Weissman Oxidative protein folding in eukaryotes: mechanisms and consequences J. Cell Biol. 164 2004 341 346
44. S.A. Waggoner, and S.A. Liebhaber Regulation of alpha-globin mRNA stability Exp. Biol. Med. 228 4 2003 387 395
45. H. Wang, H. Wang, J.H. Leu, G. Kou, A. Wang, and C. Lo Protein expression profiling of the shrimp cellular response to white spot syndrome virus infection Dev. Comp. Immunol. 31 2007 672 686
46. J. Wang, C. Zhao, B. Meng, J. Xie, C. Zhou, X. Chen, K. Zhao, J. Shao, Y. Xue, N. Xu, Y. Ma, and S. Liu The proteomic alterations of Thermoanaerobacter tengcongensis cultured at different temperatures Proteomics 7 2007 1409 1419
47. Y. Wang, M. Leng, X. Chen, X. Rong, and M. Liao In Vitro bacteriostatic effect of Chinese herbs against causative pathogen of skin ulcer syndrome in sea cucumber Apostichopus japonicus Prog. Fish. Sci. 30 2 2009 1 7 (In Chinese)
48. Z. Wang, W. Tong, Q. Wang, X. Bai, Z. Chen, J. Zhao, N. Xu, and S. Liu The temperature dependent proteomic analysis of Thermotoga maritima PLoS One 7 10 2012 e46463 10.1371/journal.pone.0046463
49. X. Xiong, C. Dong, X. Xu, S. Weng, Z. Liu, and J. He Proteomic analysis of zebrafish (Danio rerio) infected with infectious spleen and kidney necrosis virus Dev. Comp. Immunol. 35 2011 431 440
50. C. Xu, and B. Huang Differential proteomic response to heat stress in thermal Agrostis scabra and heat-sensitive Agrostis stolonifera Physiol. Plant. 139 2010 192 204
51. M. Yamashita, N. Ojima, and T. Sakamoto Molecular cloning and cold-inducible gene expression of ferritin H subunit isoforms in rainbow trout cells J. Biol. Chem. 271 1996 26908 26913
52. H. Yang, Y. Zhou, T. Zhang, X. Yuan, X. Li, Y. Liu, and F. Zhang Metabolic characteristics of sea cucumber Apostichopus japonicus (Selenka) during aestivation J. Exp. Mar. Biol. Ecol. 330 2006 505 510
53. Y. Yang, J. Chen, Q. Liu, C. Ben, C.D. Todd, J. Shi, Y. Yang, and X. Hu Comparative proteomic analysis of the thermotolerant plant Portulaca oleracea acclimation to combined high temperature and humidity stress J. Proteome Res. 11 2012 3605 3623
54. J. Zhang, F. Li, H. Jiang, Y. Yu, C. Liu, S. Li, B. Wang, and J. Xiang Proteomic analysis of differentially expressed proteins in lymphoid organ of Fenneropenaeus chinensis response to Vibrio anguillarum stimulation Fish Shellfish Immunol. 29 2010 186 194
55. J. Zhu, H. Huang, and X. Bao Acute toxicity profile of cadmium revealed by proteomics in brain tissue of Paralichthvs olivaceus: potential role of transferritin in cadmium toxicity Aquat. Toxicol. 78 2 2006 127 135