Cap-independent translation initiation of Apaf-1 mRNA based on a scanning mechanism is determined by some features of the secondary structure of its 5′ untranslated region

Biochemistry (Moscow)

Volumn 78, Issue 2, 2013, Pages 157-165

  Andreev, D E ^a   Dmitriev, S E ^a   Terenin, I M ^a   Shatsky, I N ^a  

^a MOSCOW STATE UNIVERSITY   (Russian Federation)

Author keywords

Apaf 1 mRNA; cap independent translation; cellular IRES elements; protein biosynthesis; translational control

Indexed keywords

APOPTOTIC PROTEASE ACTIVATING FACTOR 1; CAPPED RNA; INITIATION FACTOR 4E; MESSENGER RNA;

5' UNTRANSLATED REGION; ARTICLE; CELL STRAIN HEK293; CHEMISTRY; GENETICS; HUMAN; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PROTEIN SECONDARY STRUCTURE; PROTEIN SYNTHESIS;

5' UNTRANSLATED REGIONS; APOPTOTIC PROTEASE-ACTIVATING FACTOR 1; BASE SEQUENCE; EUKARYOTIC INITIATION FACTOR-4E; HEK293 CELLS; HUMANS; MOLECULAR SEQUENCE DATA; PROTEIN BIOSYNTHESIS; PROTEIN STRUCTURE, SECONDARY; RNA CAPS; RNA, MESSENGER;

EID: 84878324870     PISSN: 00062979     EISSN: 16083040     Source Type: Journal    
DOI: 10.1134/S0006297913020041     Document Type: Article

References (33)

1. Cully, M., and Downward, J. (2009) Biochem. Soc. Trans., 37, 284-288.
2. Polunovsky, V. A., and Bitterman, P. B. (2006) RNA Biol., 3, 10-17.
3. Averous, J., and Proud, C. G. (2006) Oncogene, 25, 6423-6435.
4. Robert, F., and Pelletier, J. (2009) Expert Opin. Ther. Targets, 13, 1279-1293.
5. Silvera, D., Formenti, S. C., and Schneider, R. J. (2010) Nat. Rev. Cancer, 10, 254-266.
6. Proud, C. G. (2009) Biochem. Soc. Trans., 37, 227-231.
7. Lin, T. A., Kong, X., Haystead, T. A., Pause, A., Belsham, G., Sonenberg, N., and Lawrence, J. C., Jr. (1994) Science, 266, 653-656.
8. Pause, A., Belsham, G. J., Gingras, A. C., Donze, O., Lin, T. A., Lawrence, J. C., Jr., and Sonenberg, N. (1994) Nature, 371, 762-767.
9. Poulin, F., Gingras, A. C., Olsen, H., Chevalier, S., and Sonenberg, N. (1998) J. Biol. Chem., 273, 14002-14007.
10. Reiling, J. H., and Sabatini, D. M. (2006) Oncogene, 25, 6373-6383.
11. Morley, S. J., Coldwell, M. J., and Clemens, M. J. (2005) Cell. Death Differ., 12, 571-584.
12. Schafer, Z. T., and Kornbluth, S. (2006) Dev. Cell., 10, 549-561.
13. Coldwell, M. J., Mitchell, S. A., Stoneley, M., MacFarlane, M., and Willis, A. E. (2000) Oncogene, 19, 899-905.
14. Mitchell, S. A., Spriggs, K. A., Coldwell, M. J., Jackson, R. J., and Willis, A. E. (2003) Mol. Cell., 11, 757-771.
15. Ungureanu, N. H., Cloutier, M., Lewis, S. M., de Silva, N., Blais, J. D., Bell, J. C., and Holcik, M. (2006) J. Biol. Chem., 281, 15155-15163.
16. Macejak, D. G., and Sarnow, P. (1991) Nature, 353, 90-94.
17. Holcik, M., and Sonenberg, N. (2005) Nat. Rev. Mol. Cell. Biol., 6, 318-327.
18. Komar, A. A., and Hatzoglou, M. (2005) J. Biol. Chem., 280, 23425-23428.
19. Graber, T. E., and Holcik, M. (2007) Mol. Biosyst., 3, 825-834.
20. Spriggs, K. A., Stoneley, M., Bushell, M., and Willis, A. E. (2008) Biol. Cell, 100, 27-38.
21. Komar, A. A., and Hatzoglou, M. (2011) Cell. Cycle, 10, 229-240.
22. Andreev, D. E., Dmitriev, S. E., Terenin, I. M., Prassolov, V. S., Merrick, W. C., and Shatsky, I. N. (2009) Nucleic Acids Res., 37, 6135-6147.
23. Stoneley, M., Paulin, F. E., Le Quesne, J. P., Chappell, S. A., and Willis, A. E. (1998) Oncogene, 16, 423-428.
24. Dmitriev, S. E., Andreev, D. E., Ad'yanova, Z. V., Terenin, I. M., and Shatsky, I. N. (2009) Mol. Biol. (Moscow), 43, 108-113.
25. Barreau, C., Dutertre, S., Paillard, L., and Osborne, H. B. (2006) RNA, 12, 1790-1793.
26. Dmitriev, S. E., Andreev, D. E., Terenin, I. M., Olovnikov, I. A., Prassolov, V. S., Merrick, W. C., and Shatsky, I. N. (2007) Mol. Cell. Biol., 27, 4685-4697.
27. Vassilenko, K. S., Alekhina, O. M., Dmitriev, S. E., Shatsky, I. N., and Spirin, A. S. (2011) Nucleic Acids Res., 39, 5555-5567.
28. De Gregorio, E., Preiss, T., and Hentze, M. W. (1998) RNA, 4, 828-836.
29. Ali, I. K., McKendrick, L., Morley, S. J., and Jackson, R. J. (2001) EMBO J., 20, 4233-4242.
30. Gunnery, S., Maivali, U., and Mathews, M. B. (1997) J. Biol. Chem., 272, 21642-21646.
31. Shatsky, I. N., Dmitriev, S. E., Terenin, I. M., and Andreev, D. E. (2010) Mol. Cells, 30, 285-293.
32. Terenin, I. M., Andreev, D. E., Dmitriev, S. E., and Shatsky, I. N. (2012) Nucleic Acids Res., doi: 10.1093/nar/gks 1282.
33. Lerner, R. S., and Nicchitta, C. V. (2006) RNA, 12, 775-789.