Prevalence of NDM-1 carbapenemase in patients with diarrhoea in Pakistan and evaluation of two chromogenic culture media

Journal of Applied Microbiology

Volumn 114, Issue 6, 2013, Pages 1810-1816

  Day, K M ^a   Salman, M ^b   Kazi, B ^b   Sidjabat, H E ^c   Silvey, A ^c   Lanyon, C V ^d   Cummings, S P ^d   Ali, M N ^b   Raza, M W ^a   Paterson, D L ^c   Perry, J D ^a  

^a FREEMAN HOSPITAL   (United Kingdom)

^b NATIONAL INSTITUTE OF HEALTH   (Pakistan)

^c UNIVERSITY OF QUEENSLAND   (Australia)

^d NORTHUMBRIA UNIVERSITY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

CULTURE MEDIUM; ENTEROBACTERIACEAE; ISLAMABAD; NATIONAL INSTITUTE OF HEALTHS; PAKISTAN; POSITIVE PREDICTIVE VALUES;

CHROMOGENICS;

AMIKACIN; AZTREONAM; CARBAPENEMASE; CEFEPIME; CEFOTAXIME; CHROMOGENIC SUBSTRATE; CIPROFLOXACIN; COTRIMOXAZOLE; FOSFOMYCIN; GENTAMICIN; MECILLINAM; NDM 1 CARBAPENEMASE; NITROFURANTOIN; PIPERACILLIN PLUS TAZOBACTAM; TEMOCILLIN; TIGECYCLINE; UNCLASSIFIED DRUG; BACTERIAL PROTEIN; BETA LACTAMASE; BETA-LACTAMASE NDM-1; CULTURE MEDIUM;

BACTERIUM; DIARRHEAL DISEASE; ENZYME ACTIVITY; FECES; GENE EXPRESSION; MICROBIOLOGY;

ADOLESCENT; ADULT; AGED; ARTICLE; BACTERIAL COLONIZATION; BACTERIUM ISOLATE; CHILD; CITROBACTER FREUNDII; CLINICAL ARTICLE; CONTROLLED STUDY; ENTEROBACTER CLOACAE; ENTEROBACTERIACEAE; ENTEROBACTERIACEAE INFECTION; ESCHERICHIA COLI; FECES ANALYSIS; HUMAN; INFANT; KLEBSIELLA PNEUMONIAE; KLUYVERA GEORGIANA; PAKISTAN; PRESCHOOL CHILD; SCHOOL CHILD; CULTURE MEDIUM; DIARRHEA; ENZYMOLOGY; FEMALE; ISOLATION AND PURIFICATION; MALE; METABOLISM; MICROBIOLOGY; MIDDLE AGED; VERY ELDERLY; YOUNG ADULT;

PAKISTAN;

ENTEROBACTERIACEAE;

ADOLESCENT; ADULT; AGED; AGED, 80 AND OVER; BACTERIAL PROTEINS; BETA-LACTAMASES; CHILD; CHILD, PRESCHOOL; CHROMOGENIC COMPOUNDS; CULTURE MEDIA; DIARRHEA; ENTEROBACTERIACEAE; ENTEROBACTERIACEAE INFECTIONS; FEMALE; HUMANS; INFANT; MALE; MIDDLE AGED; PAKISTAN; YOUNG ADULT;

EID: 84878270198     PISSN: 13645072     EISSN: 13652672     Source Type: Journal    
DOI: 10.1111/jam.12171     Document Type: Article

References (25)

1. Anderson, K.F., Lonsway, D.R., Rasheed, J.K., Biddle, J., Jensen, B., McDougal, L.K., Carey, R.B., Thompson, A. et al. (2007) Evaluation of methods to identify the Klebsiella pneumoniae carbapenemase in Enterobacteriaceae. J Clin Microbiol 45, 2723-2725.
2. Carattoli, A., Bertini, A., Villa, L., Falbo, V., Hopkins, K.L. and Threlfall, E.J. (2005) Identification of plasmids by PCR-based replicon typing. J Microbiol Methods 63, 219-228.
3. Cohen Stuart, J.W.T., Voets, G., Rottier, W., Voskuil, S., Scharringa, J., Fluit, A. and Leverstein-Van Hall, M. (2012). Evaluation of the Oxoid Brilliance™ CRE agar for detection of carbapenemase-producing Enterobacteriaceae. Abstract P1716 presented at: 22nd European Congress of Clinical Microbiology and Infectious Diseases (ECCMID), March 31-3 2012, London, UK.
4. Day, K.M., Ali, S., Mirza, I.A., Sidjabat, H.E., Silvey, A., Lanyon, C., Cummings, S.P., Abbasi, S.A. et al. (2013) Prevalence and molecular characterization of Enterobacteriaceae producing NDM-1 carbapenemase at a Military Hospital in Pakistan and evaluation of two chromogenic media. Diagn Microbiol Infect Dis 75, 187-191.
5. Doi, Y. and Arakawa, Y. (2007) 16S ribosomal RNA methylation: emerging resistance mechanism against aminoglycosides. Clin Infect Dis 45, 88-94.
6. EUCAST. (2012). Antimicrobial Susceptibility Testing. http://www.eucast.org/antimicrobial_susceptibility_testing/ (28 November 2012, date last accessed).
7. Glupczynski, Y., Huang, T.D., Bouchahrouf, W., Rezende de Castro, R., Bauraing, C., Gérard, M., Verbruggen, A.M., Deplano, A. et al. (2012) Rapid emergence and spread of OXA-48-producing carbapenem-resistant Enterobacteriaceae isolates in Belgian hospitals. Int J Antimicrob Agents 39, 168-172.
8. Harbarth, S., Hawkey, P.M., Tenover, F., Stefani, S., Pantosti, A. and Struelens, M.J. (2011) Update on screening and clinical diagnosis of meticillin-resistant Staphylococcus aureus (MRSA). Int J Antimicrob Agents 37, 110-117.
9. Kumarasamy, K.K., Toleman, M.A., Walsh, T.R., Bagaria, J., Butt, F., Balakrishnan, R., Chaudhary, U., Doumith, M. et al. (2010) Emergence of a new antibiotic resistance mechanism in India, Pakistan, and the UK: a molecular, biological, and epidemiological study. Lancet Infect Dis 10, 597-602.
10. Monteiro, J., Widen, R.H., Pignatari, A.C.C., Kubasek, C. and Silbert, S. (2012) Rapid detection of carbapenemase genes by multiplex real-time PCR. J Antimicrob Chemother 67, 906-909.
11. Naas, T., Ergani, A., Carrër, A. and Nordmann, P. (2011) Real-time PCR for detection of NDM-1 carbapenemase genes from spiked stool samples. Antimicrob Agents Chemother 55, 4038-4043.
12. Nordmann, P., Poirel, L., Carrër, A., Toleman, M.A. and Walsh, T.R. (2011) How to detect NDM-1 producers. J Clin Microbiol 49, 718-721.
13. Paniagua, R., Valverde, A., Coque, T.M., Baquero, F. and Cantón, R. (2010) Assessment of prevalence and changing epidemiology of extended-spectrum ß-lactamase-producing Enterobacteriaceae fecal carriers using a chromogenic medium. Diagn Microbiol Infect Dis 67, 376-379.
14. Perry, J.D., Naqvi, S.H., Mirza, I.A., Alizai, S.A., Hussain, A., Ghirardi, S., Orenga, S., Wilkinson, K. et al. (2011) Prevalence of faecal carriage of Enterobacteriaceae with NDM-1 carbapenemase at military hospitals in Pakistan, and evaluation of two chromogenic media. J Antimicrob Chemother 66, 2288-2294.
15. Samra, Z., Bahar, J., Madar-Shapiro, L., Aziz, N., Israel, S. and Bishara, J. (2008) Evaluation of CHROMagar KPC for rapid detection of carbapenem-resistant Enterobacteriaceae. J Clin Microbiol 46, 3110-3111.
16. Schechner, V., Straus-Robinson, K., Schwartz, D., Pfeffer, I., Tarabeia, J., Moskovich, R., Chmelnitsky, I., Schwaber, M.J. et al. (2009) Evaluation of PCR-based testing for surveillance of KPC-producing carbapenem-resistant members of the Enterobacteriaceae family. J Clin Microbiol 47, 3261-3265.
17. Sidjabat, H.E., Derrington, P., Nimmo, G.R. and Paterson, D.L. (2010) Escherichia coli ST131 producing CTX-M-15 in Australia. J Antimicrob Chemother 65, 1301-1303.
18. Sidjabat, H., Nimmo, G.R., Walsh, T.R., Binotto, E., Htin, A., Hayashi, Y., Li, J., Nation, R.L. et al. (2011) Carbapenem resistance in Klebsiella pneumoniae due to New Delhi metallo-beta-lactamase. Clin Infect Dis 52, 481-484.
19. Stamper, P.D., Shulder, S., Bekalo, P., Manandhar, D., Ross, T.L., Speser, S., Kingery, J. and Carroll, K.C. (2010) Evaluation of BBL CHROMagar VanRE for detection of vancomycin-resistant enterococci in rectal swab specimens. J Clin Microbiol 48, 4294-4297.
20. Voulgari, E., Poulou, A., Koumaki, V. and Tsakris, A. (2013) Carbapenemase-producing Enterobacteriaceae: now that the storm is finally here, how will timely detection help us fight back? Future Microbiol 8, 27-39.
21. Vrioni, G., Daniil, I., Voulgari, E., Ranellou, K., Koumaki, V., Ghirardi, S., Kimouli, M., Zambardi, G. et al. (2012) Comparative evaluation of a prototype chromogenic medium (chromID CARBA) for detecting carbapenemase-producing Enterobacteriaceae in surveillance rectal swabs. J Clin Microbiol 50, 1841-1846.
22. Walsh, T.R. (2010). Emerging carbapenemases: a global perspective. Int J Antimicrob Agents 36S3, S8-S14.
23. Walsh, T.R. and Toleman, M.A. (2012) The emergence of pan-resistant Gram-negative pathogens merits a rapid global political response. J Antimicrob Chemother 67, 1-3.
24. Walsh, T.R., Weeks, J., Livermore, D.M. and Toleman, M.A. (2011) Dissemination of NDM-1 positive bacteria in the New Delhi environment and its implications for human health: an environmental point prevalence study. Lancet Infect Dis 11, 355-362.
25. Wilkinson, K.M., Winstanley, T.G., Lanyon, C., Cummings, S.P., Raza, M.W. and Perry, J.D. (2012) A comparison of four chromogenic culture media for carbapenemase-producing Enterobacteriaceae. J Clin Microbiol 50, 3102-3104.