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Volumn 5, Issue 5, 2013, Pages

Multiplex target capture with double-stranded DNA probes

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA;

EID: 84878263017     PISSN: None     EISSN: 1756994X     Source Type: Journal    
DOI: 10.1186/gm454     Document Type: Article
Times cited : (15)

References (38)
  • 6
    • 34249858340 scopus 로고    scopus 로고
    • Multiplex amplification of all coding sequences within 10 cancer genes by Gene-Collector
    • 10.1093/nar/gkm078, 1874629, 17317684
    • Fredriksson S, Baner J, Dahl F, Chu A, Ji H, Welch K, Davis RW. Multiplex amplification of all coding sequences within 10 cancer genes by Gene-Collector. Nucleic Acids Res 2007, 35:e47. 10.1093/nar/gkm078, 1874629, 17317684.
    • (2007) Nucleic Acids Res , vol.35
    • Fredriksson, S.1    Baner, J.2    Dahl, F.3    Chu, A.4    Ji, H.5    Welch, K.6    Davis, R.W.7
  • 7
    • 55549092780 scopus 로고    scopus 로고
    • Nested Patch PCR enables highly multiplexed mutation discovery in candidate genes
    • 10.1101/gr.078204.108, 2577855, 18849522
    • Varley KE, Mitra RD. Nested Patch PCR enables highly multiplexed mutation discovery in candidate genes. Genome Res 2008, 18:1844-1850. 10.1101/gr.078204.108, 2577855, 18849522.
    • (2008) Genome Res , vol.18 , pp. 1844-1850
    • Varley, K.E.1    Mitra, R.D.2
  • 11
    • 35748959649 scopus 로고    scopus 로고
    • Microarray-based genomic selection for high-throughput resequencing
    • 10.1038/nmeth1109, 17934469
    • Okou DT, Steinberg KM, Middle C, Cutler DJ, Albert TJ, Zwick ME. Microarray-based genomic selection for high-throughput resequencing. Nat Methods 2007, 4:907-909. 10.1038/nmeth1109, 17934469.
    • (2007) Nat Methods , vol.4 , pp. 907-909
    • Okou, D.T.1    Steinberg, K.M.2    Middle, C.3    Cutler, D.J.4    Albert, T.J.5    Zwick, M.E.6
  • 13
    • 67349179787 scopus 로고    scopus 로고
    • Massively parallel exon capture and library-free resequencing across 16 genomes
    • 10.1038/nmeth.f.248, 2703445, 19349981
    • Turner EH, Lee C, Ng SB, Nickerson DA, Shendure J. Massively parallel exon capture and library-free resequencing across 16 genomes. Nat Methods 2009, 6:315-316. 10.1038/nmeth.f.248, 2703445, 19349981.
    • (2009) Nat Methods , vol.6 , pp. 315-316
    • Turner, E.H.1    Lee, C.2    Ng, S.B.3    Nickerson, D.A.4    Shendure, J.5
  • 15
    • 13844283117 scopus 로고    scopus 로고
    • In situ genotyping individual DNA molecules by target-primed rolling-circle amplification of padlock probes
    • 10.1038/nmeth723, 15782198
    • Larsson C, Koch J, Nygren A, Janssen G, Raap AK, Landegren U, Nilsson M. In situ genotyping individual DNA molecules by target-primed rolling-circle amplification of padlock probes. Nat Methods 2004, 1:227-232. 10.1038/nmeth723, 15782198.
    • (2004) Nat Methods , vol.1 , pp. 227-232
    • Larsson, C.1    Koch, J.2    Nygren, A.3    Janssen, G.4    Raap, A.K.5    Landegren, U.6    Nilsson, M.7
  • 16
    • 84857784165 scopus 로고    scopus 로고
    • Library-free methylation sequencing with bisulfite padlock probes
    • 10.1038/nmeth.1871, 3461232, 22306810
    • Diep D, Plongthongkum N, Gore A, Fung HL, Shoemaker R, Zhang K. Library-free methylation sequencing with bisulfite padlock probes. Nat Methods 2012, 9:270-272. 10.1038/nmeth.1871, 3461232, 22306810.
    • (2012) Nat Methods , vol.9 , pp. 270-272
    • Diep, D.1    Plongthongkum, N.2    Gore, A.3    Fung, H.L.4    Shoemaker, R.5    Zhang, K.6
  • 17
    • 48249090463 scopus 로고    scopus 로고
    • A comprehensive assay for targeted multiplex amplification of human DNA sequences
    • 10.1073/pnas.0803240105, 2442818, 18599465
    • Krishnakumar S, Zheng J, Wilhelmy J, Faham M, Mindrinos M, Davis R. A comprehensive assay for targeted multiplex amplification of human DNA sequences. Proc Natl Acad Sci USA 2008, 105:9296-9301. 10.1073/pnas.0803240105, 2442818, 18599465.
    • (2008) Proc Natl Acad Sci USA , vol.105 , pp. 9296-9301
    • Krishnakumar, S.1    Zheng, J.2    Wilhelmy, J.3    Faham, M.4    Mindrinos, M.5    Davis, R.6
  • 19
    • 27244436950 scopus 로고    scopus 로고
    • Multiplex amplification enabled by selective circularization of large sets of genomic DNA fragments
    • 10.1093/nar/gni070, 1087789, 15860768
    • Dahl F, Gullberg M, Stenberg J, Landegren U, Nilsson M. Multiplex amplification enabled by selective circularization of large sets of genomic DNA fragments. Nucleic Acids Res 2005, 33:e71. 10.1093/nar/gni070, 1087789, 15860768.
    • (2005) Nucleic Acids Res , vol.33
    • Dahl, F.1    Gullberg, M.2    Stenberg, J.3    Landegren, U.4    Nilsson, M.5
  • 21
    • 84877108149 scopus 로고    scopus 로고
    • Single molecule molecular inversion probes for targeted, high-accuracy detection of low-frequency variation
    • 10.1101/gr.147686.112, 23382536
    • Hiatt JB, Pritchard CC, Salipante SJ, O'Roak BJ, Shendure J. Single molecule molecular inversion probes for targeted, high-accuracy detection of low-frequency variation. Genome Res 2013, 23:843-854. 10.1101/gr.147686.112, 23382536.
    • (2013) Genome Res , vol.23 , pp. 843-854
    • Hiatt, J.B.1    Pritchard, C.C.2    Salipante, S.J.3    O'Roak, B.J.4    Shendure, J.5
  • 22
    • 80755142727 scopus 로고    scopus 로고
    • Efficient targeted resequencing of human germline and cancer genomes by oligonucleotide-selective sequencing
    • 10.1038/nbt.1996, 22020387
    • Myllykangas S, Buenrostro JD, Natsoulis G, Bell JM, Ji HP. Efficient targeted resequencing of human germline and cancer genomes by oligonucleotide-selective sequencing. Nat Biotechnol 2011, 29:1024-1027. 10.1038/nbt.1996, 22020387.
    • (2011) Nat Biotechnol , vol.29 , pp. 1024-1027
    • Myllykangas, S.1    Buenrostro, J.D.2    Natsoulis, G.3    Bell, J.M.4    Ji, H.P.5
  • 25
    • 77952530236 scopus 로고    scopus 로고
    • Synthesis of high-quality libraries of long (150mer) oligonucleotides by a novel depurination controlled process
    • 10.1093/nar/gkq163, 2860131, 20308161
    • LeProust EM, Peck BJ, Spirin K, McCuen HB, Moore B, Namsaraev E, Caruthers MH. Synthesis of high-quality libraries of long (150mer) oligonucleotides by a novel depurination controlled process. Nucleic Acids Res 2010, 38:2522-2540. 10.1093/nar/gkq163, 2860131, 20308161.
    • (2010) Nucleic Acids Res , vol.38 , pp. 2522-2540
    • LeProust, E.M.1    Peck, B.J.2    Spirin, K.3    McCuen, H.B.4    Moore, B.5    Namsaraev, E.6    Caruthers, M.H.7
  • 26
    • 0028134833 scopus 로고
    • Padlock probes: circularizing oligonucleotides for localized DNA detection
    • 10.1126/science.7522346, 7522346
    • Nilsson M, Malmgren H, Samiotaki M, Kwiatkowski M, Chowdhary BP, Landegren U. Padlock probes: circularizing oligonucleotides for localized DNA detection. Science 1994, 265:2085-2088. 10.1126/science.7522346, 7522346.
    • (1994) Science , vol.265 , pp. 2085-2088
    • Nilsson, M.1    Malmgren, H.2    Samiotaki, M.3    Kwiatkowski, M.4    Chowdhary, B.P.5    Landegren, U.6
  • 28
    • 41249094334 scopus 로고    scopus 로고
    • Connector inversion probe technology: a powerful one-primer multiplex DNA amplification system for numerous scientific applications
    • 10.1371/journal.pone.0000915, 1976392, 17878950
    • Akhras MS, Unemo M, Thiyagarajan S, Nyren P, Davis RW, Fire AZ, Pourmand N. Connector inversion probe technology: a powerful one-primer multiplex DNA amplification system for numerous scientific applications. PLoS One 2007, 2:e915. 10.1371/journal.pone.0000915, 1976392, 17878950.
    • (2007) PLoS One , vol.2
    • Akhras, M.S.1    Unemo, M.2    Thiyagarajan, S.3    Nyren, P.4    Davis, R.W.5    Fire, A.Z.6    Pourmand, N.7
  • 29
    • 0019877035 scopus 로고
    • Shotgun DNA sequencing using cloned DNase I-generated fragments
    • 10.1093/nar/9.13.3015, 327328, 6269069
    • Anderson S. Shotgun DNA sequencing using cloned DNase I-generated fragments. Nucleic Acids Res 1981, 9:3015-3027. 10.1093/nar/9.13.3015, 327328, 6269069.
    • (1981) Nucleic Acids Res , vol.9 , pp. 3015-3027
    • Anderson, S.1
  • 30
    • 79251621970 scopus 로고    scopus 로고
    • Dynamic DNA nanotechnology using strand-displacement reactions
    • 10.1038/nchem.957, 21258382
    • Zhang DY, Seelig G. Dynamic DNA nanotechnology using strand-displacement reactions. Nat Chem 2011, 3:103-113. 10.1038/nchem.957, 21258382.
    • (2011) Nat Chem , vol.3 , pp. 103-113
    • Zhang, D.Y.1    Seelig, G.2
  • 32
    • 80053322191 scopus 로고    scopus 로고
    • Targeted sequencing of the human × chromosome exome
    • 10.1016/j.ygeno.2011.04.004, 3154473, 21524701
    • Mondal K, Shetty AC, Patel V, Cutler DJ, Zwick ME. Targeted sequencing of the human × chromosome exome. Genomics 2011, 98:260-265. 10.1016/j.ygeno.2011.04.004, 3154473, 21524701.
    • (2011) Genomics , vol.98 , pp. 260-265
    • Mondal, K.1    Shetty, A.C.2    Patel, V.3    Cutler, D.J.4    Zwick, M.E.5
  • 33
    • 51349100415 scopus 로고    scopus 로고
    • Estimating genome-wide copy number using allele-specific mixture models
    • 10.1089/cmb.2007.0148, 2612042,2612042, 18707534
    • Wang W, Carvalho B, Miller ND, Pevsner J, Chakravarti A, Irizarry RA. Estimating genome-wide copy number using allele-specific mixture models. J Comput Biol 2008, 15:857-866. 10.1089/cmb.2007.0148, 2612042,2612042, 18707534.
    • (2008) J Comput Biol , vol.15 , pp. 857-866
    • Wang, W.1    Carvalho, B.2    Miller, N.D.3    Pevsner, J.4    Chakravarti, A.5    Irizarry, R.A.6
  • 34
    • 79953855362 scopus 로고    scopus 로고
    • Accurate and exact CNV identification from targeted high-throughput sequence data
    • 10.1186/1471-2164-12-184, 3088570, 21486468
    • Nord AS, Lee M, King MC, Walsh T. Accurate and exact CNV identification from targeted high-throughput sequence data. BMC Genomics 2011, 12:184. 10.1186/1471-2164-12-184, 3088570, 21486468.
    • (2011) BMC Genomics , vol.12 , pp. 184
    • Nord, A.S.1    Lee, M.2    King, M.C.3    Walsh, T.4
  • 36
    • 0027533930 scopus 로고
    • Targeting in linear DNA duplexes with two complementary probe strands for hybrid stability
    • 10.1038/ng0493-365, 7981759
    • Sena EP, Zarling DA. Targeting in linear DNA duplexes with two complementary probe strands for hybrid stability. Nat Genet 1993, 3:365-372. 10.1038/ng0493-365, 7981759.
    • (1993) Nat Genet , vol.3 , pp. 365-372
    • Sena, E.P.1    Zarling, D.A.2
  • 37
    • 79960226263 scopus 로고    scopus 로고
    • A method for counting PCR template molecules with application to next-generation sequencing
    • 10.1093/nar/gkr217, 3130290, 21490082
    • Casbon JA, Osborne RJ, Brenner S, Lichtenstein CP. A method for counting PCR template molecules with application to next-generation sequencing. Nucleic Acids Res 2011, 39:e81. 10.1093/nar/gkr217, 3130290, 21490082.
    • (2011) Nucleic Acids Res , vol.39
    • Casbon, J.A.1    Osborne, R.J.2    Brenner, S.3    Lichtenstein, C.P.4
  • 38
    • 80455126001 scopus 로고    scopus 로고
    • Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and genome analyzer systems
    • 10.1186/gb-2011-12-11-r112, 3334598, 22067484
    • Minoche AE, Dohm JC, Himmelbauer H. Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and genome analyzer systems. Genome Biol 2011, 12:R112. 10.1186/gb-2011-12-11-r112, 3334598, 22067484.
    • (2011) Genome Biol , vol.12
    • Minoche, A.E.1    Dohm, J.C.2    Himmelbauer, H.3


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