Optimization of microfluidic trap-based microsphere arrays

Proceedings of SPIE - The International Society for Optical Engineering

Volumn 8615, Issue , 2013, Pages

  Xu, Xiaoxiao ^a   Sarder, Pinaki ^b   Li, Zhenyu ^c   Nehorai, Arye ^a  

^a WASHINGTON UNIVERSITY IN ST LOUIS   (United States)

^b George Washington University   (United States)

^c WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Microfluidics; Microsphere arrays; Optimization; Trap based

Indexed keywords

GEOMETRIC PARAMETER; GEOMETRIC STRUCTURE; HYDRODYNAMIC TRAPPING; IMAGING EXPERIMENTS; MICROSPHERE ARRAYS; MULTIPLE CRITERIA; OPTIMIZED DEVICES; TRAP-BASED;

BIOMEMS; ERRORS; EXPERIMENTS; MICROSPHERES; MICROSYSTEMS; OPTIMIZATION;

MICROFLUIDICS;

EID: 84878143223     PISSN: 0277786X     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1117/12.2006396     Document Type: Conference Paper

References (23)

1. Oosterbroek, R. E., and Van den Berg, A., [Lab-on-a-chip: miniaturized systems for (bio)chemical analysis and synthesis], Elsevier B.V., Amsterdam (2003).
2. Srinivasan, V., Pamula, V. K., and Fair, R. B., "An integrated digital microfluidic lab-on-a-chip for clinical diagnostics on human physiological fluids," Lab Chip, 4(4), 310-315 (2004).
3. Cheng, I.-F., Chang, H.-C., Hou, D., and Chang, H.-C., "An integrated dielectrophoretic chip for continuous bioparticle filtering, focusing, sorting, trapping, and detecting," Biomicrofluidics, 1, 021503 (2007).
4. Bontoux, N., Dauphinot, L., Vitalis, T., Studer, V., Chen, Y., Rossier, J., and Potier, M.-C., "Integrating whole transcriptome assays on a lab-on-a-chip for single cell gene profiling," Lab Chip, 8(3), 443-450 (2008).
5. Fodor, S. P. A., Read, J. L., Pirrung, M. C., Stryer, L., Lu, A. T., and Dennis, S., "Light-directed, spatially addressable parallel chemical synthesis," Science, 251(4995), 767-773 (1991).
6. Gunderson, K. L., Kruglyak, S., Graige, M. S., Wickham, E., Bierle, J., Doucet, D., Milewski, M., Yang, R., Siegmund, C., Haas, J., Zhou, L., and Chee, M. S., "Decoding randomly ordered DNA arrays," Genome Res., 14(5), 870-877 (2004).
7. Situma, C., Hashimoto, M., and Soper, S. A., "Merging microfluidics with microarray-based bioassays," Biomol. Eng., 23(5), 213-231 (2006).
8. Tan, W. H., and Takeuchi, S., "A trap-and-release integrated microfluidic system for dynamic microarray applications," Proc. Natl. Acad. Sci. USA, 104(4), 1146-1151 (2007).
9. Sarder, P., and Nehorai, A., "Statistical design of position-encoded microsphere arrays," IEEE Trans. NanoBiosci., 10(1), 16-29 (2011).
10. Wyss, H. M., Blair, D. L., Morris, J. F., Stone, H. A., and Weitz, D. A., "Mechanism for clogging of microchannels," Phys. Rev. E, 74, 061402 (2006).
11. Kirby, B. J., [Micro- and Nanoscale Fluid Mechanics: Transport in Microfluidic Devices], Cambridge University Press, Cambridge, Chapter 3 (2010).
12. Bruus, H., [Theoretical microfluidics], Oxford University Press, Oxford, Chapter 2 (2008).
13. McDonald, J. C., and Whitesides, G. M., "Poly(dimethylsiloxane) as a material for fabricating microfluidic devices," Acc. Chem. Res. 35(7), 491-499 (2002).
14. White, F. M., [Fluid mechanics], McGraw-Hill, New York, (2002).
15. Manning, F. S., and Thompson, R. E., [Natural Gas], PennWell Books, Tulsa, (1991).
16. Campbell, S. A., [The Science and Engineering of Microelectronic Fabrication], Oxford University Press, Oxford, Chapter 7 (2011).
17. Dantzig, G. B., and Thapa, M. N., [Linear programming 2: theory and extensions], Springer-Verlag, New York, (2003).
18. Kolda, T. G., Lewis, R. M., and Virginia, T., "Optimization by direct search: new perspectives on some classical and modern methods," SIAM Rev., 45(3), 385-482 (2003).
19. Li, Z., and Demetri, P., "Optofluidic distributed feedback dye lasers," IEEE J. Sel. Top. Quant. Electron., 13(2), 185-193 (2007).
20. Xu, X., Sarder, P., and Nehorai, A., "Statistical design of position-encoded microsphere arrays at low target concentrations," Proc. 45th Asilomar Conf. Signals, Syst. Comput., 1694-1698 (2011).
21. Xu, X., Sarder, P., Kotagiri, N., Achilefu, S., and Nehorai, A., "Performance analysis and design of position-encoded microsphere arrays using the Ziv-Zakai bound," IEEE Trans. on NanoBiosci., 12(1), 1-12 (2013).
22. Xu, X., Sarder, P., Li, Z., and Nehorai, A., "Optimization of microfluidic microsphere-trap arrays," Biomicrofluidics 7, 014112 (2013).
23. Xu, X., Li, Z., Kotagiri, N., Sarder, P., Achilefu, S., and Nehorai, A., "Microfluidic microsphere-trap arrays for simultaneous detection of multiple targets," Proc. SPIE 8615, 861552 (2013).