-
1
-
-
0036629250
-
rRNA modifications and ribosome function
-
Decatur W, Fournier M: rRNA modifications and ribosome function. Trends Biochem Sci 2002, 27:344-51.
-
(2002)
Trends Biochem Sci
, vol.27
, pp. 344-351
-
-
Decatur, W.1
Fournier, M.2
-
2
-
-
0037013831
-
Cajal bodyspecific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs
-
Darzacq X, Jády B, Verheggen C, Kiss A, Bertrand E, Kiss T: Cajal bodyspecific small nuclear RNAs: a novel class of 2'-O-methylation and pseudouridylation guide RNAs. EMBO J 2002, 21:2746-56.
-
(2002)
EMBO J
, vol.21
, pp. 2746-2756
-
-
Darzacq, X.1
Jády, B.2
Verheggen, C.3
Kiss, A.4
Bertrand, E.5
Kiss, T.6
-
3
-
-
0035890644
-
Box C/D RNA guides for the ribose methylation of archaeal tRNAs. The tRNATrp intron guides the formation of two ribose-methylated nucleosides in the mature tRNATrp
-
Clouet d'Orval B, Bortolin ML, Gaspin C, Bachellerie JP: Box C/D RNA guides for the ribose methylation of archaeal tRNAs. The tRNATrp intron guides the formation of two ribose-methylated nucleosides in the mature tRNATrp. Nucleic Acids Res 2001, 29:4518-29.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 4518-4529
-
-
Clouet d'Orval, B.1
Bortolin, M.L.2
Gaspin, C.3
Bachellerie, J.P.4
-
4
-
-
0030963268
-
Function and synthesis of small nucleolar RNAs
-
Tollervey D, Kiss T: Function and synthesis of small nucleolar RNAs. Curr Opin Cell Biol 1997, 9:337-42.
-
(1997)
Curr Opin Cell Biol
, vol.9
, pp. 337-342
-
-
Tollervey, D.1
Kiss, T.2
-
5
-
-
0034043403
-
Processing of intron-encoded box C/D small nucleolar RNAs lacking a 5',3'-terminal stem structure
-
Darzacq X, Kiss T: Processing of intron-encoded box C/D small nucleolar RNAs lacking a 5',3'-terminal stem structure. Mol Cell Biol 2000, 20:4522-31.
-
(2000)
Mol Cell Biol
, vol.20
, pp. 4522-4531
-
-
Darzacq, X.1
Kiss, T.2
-
6
-
-
0037264089
-
Plant snoRNAs: functional evolution and new modes of gene expression
-
Brown JW, Echeverria M, Qu LH: Plant snoRNAs: functional evolution and new modes of gene expression. Trends Plant Sci 2003, 8:42-9.
-
(2003)
Trends Plant Sci
, vol.8
, pp. 42-49
-
-
Brown, J.W.1
Echeverria, M.2
Qu, L.H.3
-
7
-
-
0035898634
-
Small nucleolar RNA-guided post-transcriptional modification of cellular RNAs
-
Kiss T: Small nucleolar RNA-guided post-transcriptional modification of cellular RNAs. EMBO J 2001, 20:3617-22.
-
(2001)
EMBO J
, vol.20
, pp. 3617-3622
-
-
Kiss, T.1
-
8
-
-
34748904017
-
A dynamic scaffold of pre-snoRNP factors facilitates human box C/D snoRNP assembly
-
McKeegan KS, Debieux CM, Boulon S, Bertrand E, Watkins NJ: A dynamic scaffold of pre-snoRNP factors facilitates human box C/D snoRNP assembly. Mol Cell Biol 2007, 27:6782-93.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 6782-6793
-
-
McKeegan, K.S.1
Debieux, C.M.2
Boulon, S.3
Bertrand, E.4
Watkins, N.J.5
-
9
-
-
0027536869
-
Temperature-sensitive mutations demonstrate roles for yeast fibrillarin in pre-rRNA processing, pre-rRNA methylation, and ribosome assembly
-
Tollervey D, Lehtonen H, Jansen R, Kern H, Hurt EC: Temperature-sensitive mutations demonstrate roles for yeast fibrillarin in pre-rRNA processing, pre-rRNA methylation, and ribosome assembly. Cell 1993, 72:443-57.
-
(1993)
Cell
, vol.72
, pp. 443-457
-
-
Tollervey, D.1
Lehtonen, H.2
Jansen, R.3
Kern, H.4
Hurt, E.C.5
-
11
-
-
0032520182
-
The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase
-
Lafontaine DL, Bousquet-Antonelli C, Henry Y, Caizergues-Ferrer M, Tollervey D: The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase. Genes Dev 1998, 12:527-37.
-
(1998)
Genes Dev
, vol.12
, pp. 527-537
-
-
Lafontaine, D.L.1
Bousquet-Antonelli, C.2
Henry, Y.3
Caizergues-Ferrer, M.4
Tollervey, D.5
-
12
-
-
0042967786
-
A common sequence motif determines the Cajal body-specific localization of box H/ACA scaRNAs
-
Richard P, Darzacq X, Bertrand E, Jády BE, Verheggen C, Kiss T: A common sequence motif determines the Cajal body-specific localization of box H/ACA scaRNAs. EMBO J 2003, 22:4283-93.
-
(2003)
EMBO J
, vol.22
, pp. 4283-4293
-
-
Richard, P.1
Darzacq, X.2
Bertrand, E.3
Jády, B.E.4
Verheggen, C.5
Kiss, T.6
-
13
-
-
0030581160
-
Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2'-O-ribose methylation of rRNAs
-
Nicoloso M, Qu LH, Michot B, Bachellerie JP: Intron-encoded, antisense small nucleolar RNAs: the characterization of nine novel species points to their direct role as guides for the 2'-O-ribose methylation of rRNAs. J Mol Biol 1996, 260:178-95.
-
(1996)
J Mol Biol
, vol.260
, pp. 178-195
-
-
Nicoloso, M.1
Qu, L.H.2
Michot, B.3
Bachellerie, J.P.4
-
14
-
-
0030604698
-
Sitespecific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs
-
Kiss-László Z, Henry Y, Bachellerie JP, Caizergues-Ferrer M, Kiss T: Sitespecific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs. Cell 1996, 85:1077-88.
-
(1996)
Cell
, vol.85
, pp. 1077-1088
-
-
Kiss-László, Z.1
Henry, Y.2
Bachellerie, J.P.3
Caizergues-Ferrer, M.4
Kiss, T.5
-
15
-
-
0029808113
-
Targeted ribose methylation of RNA in vivo directed by tailored antisense RNA guides
-
Cavaillé J, Nicoloso M, Bachellerie JP: Targeted ribose methylation of RNA in vivo directed by tailored antisense RNA guides. Nature 1996, 383:732-5.
-
(1996)
Nature
, vol.383
, pp. 732-735
-
-
Cavaillé, J.1
Nicoloso, M.2
Bachellerie, J.P.3
-
16
-
-
0030711050
-
Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs
-
Ganot P, Bortolin ML, Kiss T: Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs. Cell 1997, 89:799-809.
-
(1997)
Cell
, vol.89
, pp. 799-809
-
-
Ganot, P.1
Bortolin, M.L.2
Kiss, T.3
-
17
-
-
0033555266
-
Elements essential for accumulation and function of small nucleolar RNAs directing site-specific pseudouridylation of ribosomal RNAs
-
Bortolin ML, Ganot P, Kiss T: Elements essential for accumulation and function of small nucleolar RNAs directing site-specific pseudouridylation of ribosomal RNAs. EMBO J 1999, 18:457-69.
-
(1999)
EMBO J
, vol.18
, pp. 457-469
-
-
Bortolin, M.L.1
Ganot, P.2
Kiss, T.3
-
18
-
-
72749089855
-
A novel class of small RNAs: tRNAderived RNA fragments (tRFs)
-
Lee Y, Shibata Y, Malhotra A, Dutta A: A novel class of small RNAs: tRNAderived RNA fragments (tRFs). Genes Dev 2009, 23:2639-49.
-
(2009)
Genes Dev
, vol.23
, pp. 2639-2649
-
-
Lee, Y.1
Shibata, Y.2
Malhotra, A.3
Dutta, A.4
-
19
-
-
77950202393
-
Human tRNA-derived small RNAs in the global regulation of RNA silencing
-
Haussecker D, Huang Y, Lau A, Parameswaran P, Fire A, Kay M: Human tRNA-derived small RNAs in the global regulation of RNA silencing. RNA 2010, 16:673-95.
-
(2010)
RNA
, vol.16
, pp. 673-695
-
-
Haussecker, D.1
Huang, Y.2
Lau, A.3
Parameswaran, P.4
Fire, A.5
Kay, M.6
-
20
-
-
84859897419
-
Biogenesis of Y RNAderived small RNAs is independent of the microRNA pathway
-
Nicolas F, Hall A, Csorba T, Turnbull C, Dalmay T: Biogenesis of Y RNAderived small RNAs is independent of the microRNA pathway. FEBS Lett 2012, 586:1226-30.
-
(2012)
FEBS Lett
, vol.586
, pp. 1226-1230
-
-
Nicolas, F.1
Hall, A.2
Csorba, T.3
Turnbull, C.4
Dalmay, T.5
-
21
-
-
70349652191
-
The non-coding RNA of the multidrug resistance-linked vault particle encodes multiple regulatory small RNAs
-
Persson H, Kvist A, Vallon-Christersson J, Medstrand P, Borg A, Rovira C: The non-coding RNA of the multidrug resistance-linked vault particle encodes multiple regulatory small RNAs. Nat Cell Biol 2009, 11:1268-71.
-
(2009)
Nat Cell Biol
, vol.11
, pp. 1268-1271
-
-
Persson, H.1
Kvist, A.2
Vallon-Christersson, J.3
Medstrand, P.4
Borg, A.5
Rovira, C.6
-
22
-
-
84861399262
-
Revealing stable processing products from ribosome-associated small RNAs by deep-sequencing data analysis
-
Zywicki M, Bakowska-Zywicka K, Polacek N: Revealing stable processing products from ribosome-associated small RNAs by deep-sequencing data analysis. Nucleic Acids Res 2012, 40:4013-24.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 4013-4024
-
-
Zywicki, M.1
Bakowska-Zywicka, K.2
Polacek, N.3
-
23
-
-
42949132235
-
Hidden layers of human small RNAs
-
Kawaji H, Nakamura M, Takahashi Y, Sandelin A, Katayama S, Fukuda S, Daub C, Kai C, Kawai J, Yasuda J, Carninci P, Hayashizaki Y: Hidden layers of human small RNAs. BMC Genomics 2008, 9:157.
-
(2008)
BMC Genomics
, vol.9
, pp. 157
-
-
Kawaji, H.1
Nakamura, M.2
Takahashi, Y.3
Sandelin, A.4
Katayama, S.5
Fukuda, S.6
Daub, C.7
Kai, C.8
Kawai, J.9
Yasuda, J.10
Carninci, P.11
Hayashizaki, Y.12
-
24
-
-
55949112523
-
A human snoRNA with microRNA-like functions
-
Ender C, Krek A, Friedlander M, Beitzinger M, Weinmann L, Chen W, Pfeffer S, Rajewsky N, Meister G: A human snoRNA with microRNA-like functions. Mol Cell 2008, 32:519-28.
-
(2008)
Mol Cell
, vol.32
, pp. 519-528
-
-
Ender, C.1
Krek, A.2
Friedlander, M.3
Beitzinger, M.4
Weinmann, L.5
Chen, W.6
Pfeffer, S.7
Rajewsky, N.8
Meister, G.9
-
25
-
-
67649386471
-
Small RNAs derived from snoRNAs
-
Taft R, Glazov E, Lassmann T, Hayashizaki Y, Carninci P, Mattick J: Small RNAs derived from snoRNAs. RNA 2009, 15:1233-40.
-
(2009)
RNA
, vol.15
, pp. 1233-1240
-
-
Taft, R.1
Glazov, E.2
Lassmann, T.3
Hayashizaki, Y.4
Carninci, P.5
Mattick, J.6
-
26
-
-
83755224344
-
Direct cloning of double-stranded RNAs from RNase protection analysis reveals processing patterns of C/D box snoRNAs and provides evidence for widespread antisense transcript expression
-
Shen M, Eyras E, Wu J, Khanna A, Josiah S, Rederstorff M, Zhang M, Stamm S: Direct cloning of double-stranded RNAs from RNase protection analysis reveals processing patterns of C/D box snoRNAs and provides evidence for widespread antisense transcript expression. Nucleic Acids Res 2011, 39:9720-30.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 9720-9730
-
-
Shen, M.1
Eyras, E.2
Wu, J.3
Khanna, A.4
Josiah, S.5
Rederstorff, M.6
Zhang, M.7
Stamm, S.8
-
27
-
-
77349121900
-
Identification of novel non-coding RNAs using profiles of short sequence reads from next generation sequencing data
-
Jung C, Hansen M, Makunin I, Korbie D, Mattick J: Identification of novel non-coding RNAs using profiles of short sequence reads from next generation sequencing data. BMC Genomics 2010, 11:77.
-
(2010)
BMC Genomics
, vol.11
, pp. 77
-
-
Jung, C.1
Hansen, M.2
Makunin, I.3
Korbie, D.4
Mattick, J.5
-
28
-
-
84855180476
-
deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns
-
Langenberger D, Pundhir S, Ekstrøm C, Stadler P, Hoffmann S, Gorodkin J: deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns. Bioinformatics 2012, 28:17-24.
-
(2012)
Bioinformatics
, vol.28
, pp. 17-24
-
-
Langenberger, D.1
Pundhir, S.2
Ekstrøm, C.3
Stadler, P.4
Hoffmann, S.5
Gorodkin, J.6
-
29
-
-
84864913576
-
Extensive terminal and asymmetric processing of small RNAs from rRNAs, snoRNAs, snRNAs, and tRNAs
-
Li Z, Ender C, Meister G, Moore P, Chang Y, John B: Extensive terminal and asymmetric processing of small RNAs from rRNAs, snoRNAs, snRNAs, and tRNAs. Nucleic Acids Res 2012, 40:6787-99.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 6787-6799
-
-
Li, Z.1
Ender, C.2
Meister, G.3
Moore, P.4
Chang, Y.5
John, B.6
-
30
-
-
84860385475
-
Human box C/D snoRNA processing conservation across multiple cell types
-
Scott M, Ono M, Yamada K, Endo A, Barton G, Lamond A: Human box C/D snoRNA processing conservation across multiple cell types. Nucleic Acids Res 2012, 40:3676-88.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 3676-3688
-
-
Scott, M.1
Ono, M.2
Yamada, K.3
Endo, A.4
Barton, G.5
Lamond, A.6
-
31
-
-
84865340173
-
The profile of snoRNA-derived microRNAs that regulate expression of variant surface proteins in Giardia lamblia
-
Li W, Saraiya A, Wang C: The profile of snoRNA-derived microRNAs that regulate expression of variant surface proteins in Giardia lamblia. Cell Microbiol 2012, 14:1455-73.
-
(2012)
Cell Microbiol
, vol.14
, pp. 1455-1473
-
-
Li, W.1
Saraiya, A.2
Wang, C.3
-
32
-
-
77952473473
-
The snoRNA MBII-52 (SNORD 115) is processed into smaller RNAs and regulates alternative splicing
-
Kishore S, Khanna A, Zhang Z, Hui J, Balwierz P, Stefan M, Beach C, Nicholls R, Zavolan M, Stamm S: The snoRNA MBII-52 (SNORD 115) is processed into smaller RNAs and regulates alternative splicing. Hum Mol Genet 2010, 19:1153-64.
-
(2010)
Hum Mol Genet
, vol.19
, pp. 1153-1164
-
-
Kishore, S.1
Khanna, A.2
Zhang, Z.3
Hui, J.4
Balwierz, P.5
Stefan, M.6
Beach, C.7
Nicholls, R.8
Zavolan, M.9
Stamm, S.10
-
33
-
-
79551499254
-
Human box C/D snoRNAs with miRNA like functions: expanding the range of regulatory RNAs
-
Brameier M, Herwig A, Reinhardt R, Walter L, Gruber J: Human box C/D snoRNAs with miRNA like functions: expanding the range of regulatory RNAs. Nucleic Acids Res 2011, 39:675-86.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 675-686
-
-
Brameier, M.1
Herwig, A.2
Reinhardt, R.3
Walter, L.4
Gruber, J.5
-
34
-
-
77950920903
-
Transcriptome-wide identification of RNAbinding protein and microRNA target sites by PAR-CLIP
-
Hafner M, Landthaler M, Burger L, Khorshid M, Hausser J, Berninger P, Rothballer A, Ascano M Jr, Jungkamp A, Munschauer M, Ulrich A, Wardle G, Dewell S, Zavolan M, Tuschl T: Transcriptome-wide identification of RNAbinding protein and microRNA target sites by PAR-CLIP. Cell 2010, 141:129-41.
-
(2010)
Cell
, vol.141
, pp. 129-141
-
-
Hafner, M.1
Landthaler, M.2
Burger, L.3
Khorshid, M.4
Hausser, J.5
Berninger, P.6
Rothballer, A.7
Ascano, M.8
Jungkamp, A.9
Munschauer, M.10
Ulrich, A.11
Wardle, G.12
Dewell, S.13
Zavolan, M.14
Tuschl, T.15
-
35
-
-
79959813870
-
A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins
-
Kishore S, Jaskiewicz L, Burger L, Hausser J, Khorshid M, Zavolan M: A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins. Nat Methods 2011, 8:559-64.
-
(2011)
Nat Methods
, vol.8
, pp. 559-564
-
-
Kishore, S.1
Jaskiewicz, L.2
Burger, L.3
Hausser, J.4
Khorshid, M.5
Zavolan, M.6
-
36
-
-
78651271270
-
CLIPZ: a database and analysis environment for experimentally determined binding sites of RNAbinding proteins
-
Khorshid M, Rodak C, Zavolan M: CLIPZ: a database and analysis environment for experimentally determined binding sites of RNAbinding proteins. Nucleic Acids Res 2011, 39:D245-52.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D245-D252
-
-
Khorshid, M.1
Rodak, C.2
Zavolan, M.3
-
37
-
-
33644875300
-
snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs
-
Lestrade L, Weber M: snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. Nucleic Acids Res 2006, 34:D158-62.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. D158-D162
-
-
Lestrade, L.1
Weber, M.2
-
38
-
-
38449092636
-
SnoReport: computational identification of snoRNAs with unknown targets
-
Hertel J, Hofacker I, Stadler P: SnoReport: computational identification of snoRNAs with unknown targets. Bioinformatics 2008, 24:158-64.
-
(2008)
Bioinformatics
, vol.24
, pp. 158-164
-
-
Hertel, J.1
Hofacker, I.2
Stadler, P.3
-
39
-
-
84865757142
-
Landscape of transcription in human cells
-
Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi A, Tanzer A, Lagarde J, Lin W, Schlesinger F, Xue C, Marinov GK, Khatun J, Williams BA, Zaleski C, Rozowsky J, Roder M, Kokocinski F, Abdelhamid RF, Alioto T, Antoshechkin I, Baer MT, Bar NS, Batut P, Bell K, Bell I, Chakrabortty S, Chen X, Chrast J, Curado J, et al: Landscape of transcription in human cells. Nature 2012, 489:101-8.
-
(2012)
Nature
, vol.489
, pp. 101-108
-
-
Djebali, S.1
Davis, C.A.2
Merkel, A.3
Dobin, A.4
Lassmann, T.5
Mortazavi, A.6
Tanzer, A.7
Lagarde, J.8
Lin, W.9
Schlesinger, F.10
Xue, C.11
Marinov, G.K.12
Khatun, J.13
Williams, B.A.14
Zaleski, C.15
Rozowsky, J.16
Roder, M.17
Kokocinski, F.18
Abdelhamid, R.F.19
Alioto, T.20
Antoshechkin, I.21
Baer, M.T.22
Bar, N.S.23
Batut, P.24
Bell, K.25
Bell, I.26
Chakrabortty, S.27
Chen, X.28
Chrast, J.29
Curado, J.30
more..
-
41
-
-
84874266637
-
Rfam 11.0: 10 years of RNA families
-
Burge S, Daub J, Eberhardt R, Tate J, Barquist L, Nawrocki E, Eddy S, Gardner P, Bateman A: Rfam 11.0: 10 years of RNA families. Nucleic Acids Res 2013, 41:D226-32.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D226-D232
-
-
Burge, S.1
Daub, J.2
Eberhardt, R.3
Tate, J.4
Barquist, L.5
Nawrocki, E.6
Eddy, S.7
Gardner, P.8
Bateman, A.9
-
42
-
-
79960617509
-
Identification and analysis of intermediate size noncoding RNAs in the human fetal brain
-
Yan D, He D, He S, Chen X, Fan Z, Chen R: Identification and analysis of intermediate size noncoding RNAs in the human fetal brain. PLoS One 2011, 6:e21652.
-
(2011)
PLoS One
, vol.6
-
-
Yan, D.1
He, D.2
He, S.3
Chen, X.4
Fan, Z.5
Chen, R.6
-
43
-
-
71049154451
-
Systematic identification and characterization of chicken (Gallus gallus) ncRNAs
-
Zhang Y, Wang J, Huang S, Zhu X, Liu J, Yang N, Song D, Wu R, Deng W, Skogerbo G, Wang XJ, Chen R, Zhu D: Systematic identification and characterization of chicken (Gallus gallus) ncRNAs. Nucleic Acids Res 2009, 37:6562-74.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 6562-6574
-
-
Zhang, Y.1
Wang, J.2
Huang, S.3
Zhu, X.4
Liu, J.5
Yang, N.6
Song, D.7
Wu, R.8
Deng, W.9
Skogerbo, G.10
Wang, X.J.11
Chen, R.12
Zhu, D.13
-
44
-
-
81255177005
-
Animal snoRNAs and scaRNAs with exceptional structures
-
Marz M, Gruber AR, Höner Zu Siederdissen C, Amman F, Badelt S, Bartschat S, Bernhart SH, Beyer W, Kehr S, Lorenz R, Tanzer A, Yusuf D, Tafer H, Hofacker IL, Stadler PF: Animal snoRNAs and scaRNAs with exceptional structures. RNA Biol 2011, 8:938-46.
-
(2011)
RNA Biol
, vol.8
, pp. 938-946
-
-
Marz, M.1
Gruber, A.R.2
Höner Zu Siederdissen, C.3
Amman, F.4
Badelt, S.5
Bartschat, S.6
Bernhart, S.H.7
Beyer, W.8
Kehr, S.9
Lorenz, R.10
Tanzer, A.11
Yusuf, D.12
Tafer, H.13
Hofacker, I.L.14
Stadler, P.F.15
-
45
-
-
33751009398
-
snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome
-
Yang J, Zhang X, Huang Z, Zhou H, Huang M, Zhang S, Chen Y, Qu L: snoSeeker: an advanced computational package for screening of guide and orphan snoRNA genes in the human genome. Nucleic Acids Res 2006, 34:5112-23.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 5112-5123
-
-
Yang, J.1
Zhang, X.2
Huang, Z.3
Zhou, H.4
Huang, M.5
Zhang, S.6
Chen, Y.7
Qu, L.8
-
46
-
-
23744458086
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
-
Siepel A, Bejerano G, Pedersen JS, Hinrichs AS, Hou M, Rosenbloom K, Clawson H, Spieth J, Hillier LW, Richards S, Weinstock GM, Wilson RK, Gibbs RA, Kent WJ, Miller W, Haussler D: Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res 2005, 15:1034-50.
-
(2005)
Genome Res
, vol.15
, pp. 1034-1050
-
-
Siepel, A.1
Bejerano, G.2
Pedersen, J.S.3
Hinrichs, A.S.4
Hou, M.5
Rosenbloom, K.6
Clawson, H.7
Spieth, J.8
Hillier, L.W.9
Richards, S.10
Weinstock, G.M.11
Wilson, R.K.12
Gibbs, R.A.13
Kent, W.J.14
Miller, W.15
Haussler, D.16
-
47
-
-
29844435528
-
A computational screen for mammalian pseudouridylation guide H/ACA RNAs
-
Schattner P, Barberan-Soler S, Lowe T: A computational screen for mammalian pseudouridylation guide H/ACA RNAs. RNA 2006, 12:15-25.
-
(2006)
RNA
, vol.12
, pp. 15-25
-
-
Schattner, P.1
Barberan-Soler, S.2
Lowe, T.3
-
48
-
-
75249094684
-
RNAsnoop: efficient target prediction for H/ACA snoRNAs
-
Tafer H, Kehr S, Hertel J, Hofacker IL, Stadler PF: RNAsnoop: efficient target prediction for H/ACA snoRNAs. Bioinformatics 2010, 26:610-16.
-
(2010)
Bioinformatics
, vol.26
, pp. 610-616
-
-
Tafer, H.1
Kehr, S.2
Hertel, J.3
Hofacker, I.L.4
Stadler, P.F.5
-
49
-
-
78651416809
-
PLEXY: efficient target prediction for box C/D snoRNAs
-
Kehr S, Bartschat S, Stadler PF, Tafer H: PLEXY: efficient target prediction for box C/D snoRNAs. Bioinformatics 2011, 27:279-80.
-
(2011)
Bioinformatics
, vol.27
, pp. 279-280
-
-
Kehr, S.1
Bartschat, S.2
Stadler, P.F.3
Tafer, H.4
-
50
-
-
77953787587
-
Spliceosomal snRNA modifications and their function
-
Karijolich J, Yu Y: Spliceosomal snRNA modifications and their function. RNA Biol 2010, 7:192-204.
-
(2010)
RNA Biol
, vol.7
, pp. 192-204
-
-
Karijolich, J.1
Yu, Y.2
-
51
-
-
30844442607
-
The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C
-
Kishore S, Stamm S: The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C. Science 2006, 311:230-2.
-
(2006)
Science
, vol.311
, pp. 230-232
-
-
Kishore, S.1
Stamm, S.2
-
52
-
-
78651518920
-
Conserved generation of short products at piRNA loci
-
Berninger P, Jaskiewicz L, Khorshid M, Zavolan M: Conserved generation of short products at piRNA loci. BMC Genomics 2011, 12:46.
-
(2011)
BMC Genomics
, vol.12
, pp. 46
-
-
Berninger, P.1
Jaskiewicz, L.2
Khorshid, M.3
Zavolan, M.4
-
53
-
-
80052458531
-
Biogenic mechanisms and utilization of small RNAs derived from human protein-coding genes
-
Valen E, Preker P, Andersen PR, Zhao X, Chen Y, Ender C, Dueck A, Meister G, Sandelin A, Jensen TH: Biogenic mechanisms and utilization of small RNAs derived from human protein-coding genes. Nat Struct Mol Biol 2011, 18:1075-82.
-
(2011)
Nat Struct Mol Biol
, vol.18
, pp. 1075-1082
-
-
Valen, E.1
Preker, P.2
Andersen, P.R.3
Zhao, X.4
Chen, Y.5
Ender, C.6
Dueck, A.7
Meister, G.8
Sandelin, A.9
Jensen, T.H.10
-
54
-
-
71549169628
-
Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs
-
Cole C, Sobala A, Lu C, Thatcher SR, Bowman A, Brown JW, Green PJ, Barton GJ, Hutvagner G: Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs. RNA 2009, 15:2147-60.
-
(2009)
RNA
, vol.15
, pp. 2147-2160
-
-
Cole, C.1
Sobala, A.2
Lu, C.3
Thatcher, S.R.4
Bowman, A.5
Brown, J.W.6
Green, P.J.7
Barton, G.J.8
Hutvagner, G.9
-
55
-
-
65249129859
-
Angiogenin cleaves tRNA and promotes stress-induced translational repression
-
Yamasaki S, Ivanov P, Hu GF, Anderson P: Angiogenin cleaves tRNA and promotes stress-induced translational repression. J Cell Biol 2009, 185:35-42.
-
(2009)
J Cell Biol
, vol.185
, pp. 35-42
-
-
Yamasaki, S.1
Ivanov, P.2
Hu, G.F.3
Anderson, P.4
-
56
-
-
77956278708
-
Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers
-
Liao J, Ma L, Guo Y, Zhang Y, Zhou H, Shao P, Chen Y, Qu L: Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers. PLoS One 2010, 5:e10563.
-
(2010)
PLoS One
, vol.5
-
-
Liao, J.1
Ma, L.2
Guo, Y.3
Zhang, Y.4
Zhou, H.5
Shao, P.6
Chen, Y.7
Qu, L.8
-
58
-
-
84869083054
-
Df31 protein and snoRNAs maintain accessible higher-order structures of chromatin
-
Schubert T, Pusch M, Diermeier S, Benes V, Kremmer E, Imhof A, Längst G: Df31 protein and snoRNAs maintain accessible higher-order structures of chromatin. Mol Cell 2012, 48:434-44.
-
(2012)
Mol Cell
, vol.48
, pp. 434-444
-
-
Schubert, T.1
Pusch, M.2
Diermeier, S.3
Benes, V.4
Kremmer, E.5
Imhof, A.6
Längst, G.7
-
59
-
-
80053574876
-
From snoRNA to miRNA: dual function regulatory noncoding RNAs
-
Scott MS, Ono M: From snoRNA to miRNA: dual function regulatory noncoding RNAs. Biochimie 2011, 93:1987-92.
-
(2011)
Biochimie
, vol.93
, pp. 1987-1992
-
-
Scott, M.S.1
Ono, M.2
-
60
-
-
23044431574
-
Nova regulates brain-specific splicing to shape the synapse
-
Ule J, Ule A, Spencer J, Williams A, Hu J, Cline M, Wang H, Clark T, Fraser C, Ruggiu M, Zeeberg B, Kane D, Weinstein J, Blume J, Darnell R: Nova regulates brain-specific splicing to shape the synapse. Nat Genet 2005, 37:844-52.
-
(2005)
Nat Genet
, vol.37
, pp. 844-852
-
-
Ule, J.1
Ule, A.2
Spencer, J.3
Williams, A.4
Hu, J.5
Cline, M.6
Wang, H.7
Clark, T.8
Fraser, C.9
Ruggiu, M.10
Zeeberg, B.11
Kane, D.12
Weinstein, J.13
Blume, J.14
Darnell, R.15
-
61
-
-
37349130959
-
Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing
-
Hafner M, Landgraf P, Ludwig J, Rice A, Ojo T, Lin C, Holoch D, Lim C, Tuschl T: Identification of microRNAs and other small regulatory RNAs using cDNA library sequencing. Methods 2008, 44:3-12.
-
(2008)
Methods
, vol.44
, pp. 3-12
-
-
Hafner, M.1
Landgraf, P.2
Ludwig, J.3
Rice, A.4
Ojo, T.5
Lin, C.6
Holoch, D.7
Lim, C.8
Tuschl, T.9
-
62
-
-
70349667200
-
Fast mapping of short sequences with mismatches, insertions and deletions using index structures
-
Hoffmann S, Otto C, Kurtz S, Sharma C, Khaitovich P, Vogel J, Stadler P, Hackermüller J: Fast mapping of short sequences with mismatches, insertions and deletions using index structures. PLoS Comput Biol 2009, 5: e1000502.
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Hoffmann, S.1
Otto, C.2
Kurtz, S.3
Sharma, C.4
Khaitovich, P.5
Vogel, J.6
Stadler, P.7
Hackermüller, J.8
-
63
-
-
84955177663
-
-
ENCODE data coordination center at UCSC. [http://genome.ucsc.edu/ENCODE/downloads.html].
-
-
-
-
65
-
-
0028949935
-
Classical and novel approaches to the detection and localization of the numerous modified nucleotides in eukaryotic ribosomal RNA
-
Maden BE, Corbett ME, Heeney PA, Pugh K, Ajuh PM: Classical and novel approaches to the detection and localization of the numerous modified nucleotides in eukaryotic ribosomal RNA. Biochimie 1995, 77:22-9.
-
(1995)
Biochimie
, vol.77
, pp. 22-29
-
-
Maden, B.E.1
Corbett, M.E.2
Heeney, P.A.3
Pugh, K.4
Ajuh, P.M.5
-
66
-
-
0035723065
-
Mapping 2'-O-methyl groups in ribosomal RNA
-
Maden BE: Mapping 2'-O-methyl groups in ribosomal RNA. Methods 2001, 25:374-82.
-
(2001)
Methods
, vol.25
, pp. 374-382
-
-
Maden, B.E.1
-
67
-
-
0035721651
-
Mapping pseudouridines in RNA molecules
-
Ofengand J, Del Campo M, Kaya Y: Mapping pseudouridines in RNA molecules. Methods 2001, 25:365-73.
-
(2001)
Methods
, vol.25
, pp. 365-373
-
-
Ofengand, J.1
Del Campo, M.2
Kaya, Y.3
-
68
-
-
0024390591
-
Reversible tyrosine phosphorylation of cdc2: dephosphorylation accompanies activation during entry into mitosis
-
Morla AO, Draetta G, Beach D, Wang JY: Reversible tyrosine phosphorylation of cdc2: dephosphorylation accompanies activation during entry into mitosis. Cell 1989, 58:193-203.
-
(1989)
Cell
, vol.58
, pp. 193-203
-
-
Morla, A.O.1
Draetta, G.2
Beach, D.3
Wang, J.Y.4
-
69
-
-
0024427288
-
Isolation of a human cyclin cDNA: evidence for cyclin mRNA and protein regulation in the cell cycle and for interaction with p34cdc2
-
Pines J, Hunter T: Isolation of a human cyclin cDNA: evidence for cyclin mRNA and protein regulation in the cell cycle and for interaction with p34cdc2. Cell 1989, 58:833-46.
-
(1989)
Cell
, vol.58
, pp. 833-846
-
-
Pines, J.1
Hunter, T.2
-
70
-
-
0020959280
-
Cell adhesiveness and the cell cycle: correlation in synchronized Balb/c 3T3 cells
-
Elvin P, Evans CW: Cell adhesiveness and the cell cycle: correlation in synchronized Balb/c 3T3 cells. Biol Cell 1983, 48:1-9.
-
(1983)
Biol Cell
, vol.48
, pp. 1-9
-
-
Elvin, P.1
Evans, C.W.2
|