SRV: An open-source toolbox to accelerate the recovery of metabolic biomarkers and correlations from metabolic phenotyping datasets

Bioinformatics

Volumn 29, Issue 10, 2013, Pages 1348-1349

  Navratil, Vincent ^a,c   Pontoizeau, Clément ^a   Billoir, Elise ^b   Blaise, Benjamin J ^a  

^a UNIVERSITÉ DE LYON   (France)

^b Plateforme de Recherche de Rovaltain en Toxicologie Environnementale et Ecotoxicologie   (France)

^c UNIVERSITÉ LYON 1   (France)

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MARKER;

ALGORITHM; ARTICLE; CHEMISTRY; COMPUTER PROGRAM; HUMAN; METABOLISM; MULTIVARIATE ANALYSIS; NUCLEAR MAGNETIC RESONANCE;

ALGORITHMS; BIOLOGICAL MARKERS; HUMANS; METABOLIC NETWORKS AND PATHWAYS; MULTIVARIATE ANALYSIS; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; SOFTWARE;

EID: 84877979352     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt136     Document Type: Article

References (8)

1. Blaise, B.J. et al. (2009) Statistical recoupling prior to significance testing in nuclear magnetic resonance based metabonomics. Anal. Chem., 81, 6242-6251.
2. Blaise, B.J. et al. (2010) Two-dimensional statistical recoupling for the identification of perturbed metabolic networks from NMR spectroscopy. J. Proteome Res., 9, 4513-4520.
3. Blaise, B.J. et al. (2011) Orthogonal Filtered Recoupled-STOCSY to extract metabolic networks associated with minor perturbations from NMR spectroscopy. J. Proteome Res., 10, 4342-4348.
4. Benjamini, B.Y. and Yekutieli, D. (2001) The control of the false discovery rate in multiple testing under dependency. Ann. Stat., 29, 1165-1188.
5. Cloarec, O. et al. (2005) Statistical total correlation spectroscopy: an exploratory approach for latent biomarker identification from metabolic 1H NMR data sets. Anal. Chem., 77, 1282-1289.
6. Lavine, B. and Workman, J. (2010) Chemometrics. Anal. Chem., 82, 4699-4711.
7. Nicholson, J. et al. (1999) "Metabonomics": understanding the metabolic responses of living systems to pathophysiological stimuli via multivariate statistical analysis of biological NMR spectroscopic data. Xenobiotica, 29, 1181-1189.
8. Trygg, J. and Wold, S. (2002) Orthogonal projections to latent structures (O-PLS). J. Chemom., 16, 119-128.