Endobacter medicaginis gen. nov., sp. nov., isolated from alfalfa nodules in an acidic soil

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue PART 5, 2013, Pages 1760-1765

  Ramírez Bahena, Martha Helena ^a,b   Tejedor, Carmen ^b   Martín, Isidro ^b   Velázquez, Encarna ^b   Peix, Alvaro ^a,b  

^a INSTITUTO DE RECURSOS NATURALES Y AGROBIOLOGÍA DE SALAMANCA   (Spain)

^b UNIVERSITY OF SALAMANCA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

ACETIC ACID; CARDIOLIPIN; DIHYDROXYACETONE; GLYCOLIPID; PHOSPHATIDYLETHANOLAMINE; PHOSPHOLIPID;

ALFALFA; ARTICLE; BACTERIAL GENE; BACTERIUM ISOLATE; DNA BASE COMPOSITION; ENDOBACTER MEDICAGINIS; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; INTRACELLULAR BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SOIL;

EID: 84877849707     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.041368-0     Document Type: Article

References (29)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
2. Chun, J. & Goodfellow, M. (1995). A phylogenetic analysis of the genus Nocardia with 16S rRNA sequences. Int J Syst Bacteriol 45, 240-245.
3. Djedidi, S., Yokoyama, T., Ohkama-Ohtsu, N., Risal, C. P., Abdelly, C. & Sekimoto, H. (2011). Stress tolerance and symbiotic and phylogenic features of root nodule bacteria associated with Medicago species in different bioclimatic regions of Tunisia. Microbes Environ 26, 36-45.
4. Doetsch, R. N. (1981). Determinative methods of light microscopy. In Manual of Methods for General Bacteriology, pp. 21-33. Edited by P. Gerdhardt, R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg & G. B. Phillips. Washington, DC: American Society for Microbiology.
5. Dong, Z., Canny, M. J., McCully, M. E., Roboredo, M. R., Cabadilla, C. F., Ortega, E. & Rodés, R. (1994). A nitrogen-fixing endophyte of sugarcane. A new role for the apoplast. Plant Physiol 105, 1139-1147.
6. Gaunt, M. W., Turner, S. L., Rigottier-Gois, L., Lloyd-Macgilp, S. A. & Young, J. P. (2001). Phylogenies of atpD and recA support the small subunit rRNA-based classification of rhizobia. Int J Syst Evol Microbiol 51, 2037-2048.
7. Greenberg, D. E., Porcella, S. F., Stock, F., Wong, A., Conville, P. S., Murray, P. R., Holland, S. M. & Zelazny, A. M. (2006). Granulibacter bethesdensis gen. nov., sp. nov., a distinctive pathogenic acetic acid bacterium in the family Acetobacteraceae. Int J Syst Evol Microbiol 56, 2609-2616.
8. Kan, F. L., Chen, Z. Y., Wang, E. T., Tian, C. F., Sui, X. H. & Chen, W. X. (2007). Characterization of symbiotic and endophytic bacteria isolated from root nodules of herbaceous legumes grown in Qinghai-Tibet plateau and in other zones of China. Arch Microbiol 188, 103-115.
9. Kim, O. S., Cho, Y. J., Lee, K., Yoon, S. H., Kim, M., Na, H., Park, S. C., Jeon, Y. S., Lee, J. H. & other authors (2012). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
10. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
11. Lisdiyanti, P., Kawasaki, H., Widyastuti, Y., Saono, S., Seki, T., Yamada, Y., Uchimura, T. & Komagata, K. (2002). Kozakia baliensis gen. nov., sp. nov., a novel acetic acid bacterium in the aproteobacteria. Int J Syst Evol Microbiol 52, 813-818.
12. Loganathan, P. & Nair, S. (2004). Swaminathania salitolerans gen. nov., sp. nov., a salt-tolerant, nitrogen-fixing and phosphatesolubilizing bacterium from wild rice (Porteresia coarctata Tateoka). Int J Syst Evol Microbiol 54, 1185-1190.
13. Mandel, M. & Marmur, J. (1968). Use of ultraviolet absorbance temperature profile for determining the guanine plus cytosine content of DNA. Methods Enzymol 12, 195-206.
14. Peix, A., Rivas, R., Velázquez, E., Mateos, P. F., Marti{dotless}́nez-Molina, E., Muñ oz-Herrera, A., Gómez-Alonso, A. & Velázquez, E. (2005). Application of horizontal staircase electrophoresis in agarose minigels to the random intergenic spacer analysis of clinical samples. Electrophoresis 26, 4402-4410.
15. Rivas, R., Garci{dotless}́a-Fraile, P., Mateos, P. F., Marti{dotless}́nez-Molina, E. & Velázquez, E. (2007). Characterization of xylanolytic bacteria present in the bract phyllosphere of the date palm Phoenix dactylifera. Lett Appl Microbiol 44, 181-187.
16. Rogers, J. S. & Swofford, D. L. (1998). A fast method for approximating maximum likelihoods of phylogenetic trees from nucleotide sequences. Syst Biol 47, 77-89.
17. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
18. Saravanan, V. S., Madhaiyan, M., Osborne, J., Thangaraju, M. & Sa, T. M. (2008). Ecological occurrence of Gluconacetobacter diazotrophicus and nitrogen-fixing Acetobacteraceae members: their possible role in plant growth promotion. Microb Ecol 55, 130-140.
19. Sievers, M. & Swings, J. (2005). Family II: Acetobacteraceae Gillis and de Ley 1980, 23VP. In Bergey's Manual of Systematic Bacteriology, vol. 2, pp. 41-95. Edited by D. J. Brenner, N. R. Krieg & J. T. Stanley. New York: Springer.
20. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
21. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
22. Tindall, B. J. (1990a). A comparative study of the lipid composition of Halobacterium saccharovorum from various sources. Syst Appl Microbiol 13, 128-130.
23. Tindall, B. J. (1990b). Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66, 199-202.
24. Trujillo, M. E., Alonso-Vega, P., Rodri{dotless}́guez, R., Carro, L., Cerda, E., Alonso, P. & Marti{dotless}́nez-Molina, E. (2010). The genus Micromonospora is widespread in legume root nodules: the example of Lupinus angustifolius. ISME J 4, 1265-1281.
25. Urakami, T., Tamaoka, J., Suzuki, K. I. & Komagata, K. (1989). Acidomonas gen. nov., incorporating Acetobacter methanolicus as Acidomonas methanolica comb. nov. Int J Syst Bacteriol 39, 50-55.
26. Vincent, J. M. (1970). The cultivation, isolation and maintenance of rhizobia. In A Manual for the Practical Study of Root-Nodule, pp. 1-13. Edited by J. M. Vincent. Oxford: Blackwell Scientific Publications.
27. Yamada, Y., Katsura, K., Kawasaki, H., Widyastuti, Y., Saono, S., Seki, T., Uchimura, T. & Komagata, K. (2000). Asaia bogorensis gen. nov., sp. nov., an unusual acetic acid bacterium in the a-Proteobacteria. Int J Syst Evol Microbiol 50, 823-829.
28. Yamashita, S., Uchimura, T. & Komagata, K. (2004). Emendation of the genus Acidomonas Urakami, Tamaoka, Suzuki and Komagata 1989. Int J Syst Evol Microbiol 54, 865-870.
29. Yukphan, P., Malimas, T., Potacharoen, W., Tanasupawat, S., Tanticharoen, M. & Yamada, Y. (2005). Neoasaia chiangmaiensis gen. nov., sp. nov., a novel osmotolerant acetic acid bacterium in the a-Proteobacteria. J Gen Appl Microbiol 51, 301-311.