-
1
-
-
0030666570
-
Cloning and characterization of the Flavobacterium johnsoniae (Cytophaga johnsonae) gliding motility gene, gldA
-
Agarwal, S., Hunnicutt, D.W., and McBride, M.J. (1997) Cloning and characterization of the Flavobacterium johnsoniae (Cytophaga johnsonae) gliding motility gene, gldA. Proc Natl Acad Sci USA 94: 12139-12144.
-
(1997)
Proc Natl Acad Sci USA
, vol.94
, pp. 12139-12144
-
-
Agarwal, S.1
Hunnicutt, D.W.2
McBride, M.J.3
-
2
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
3
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
4
-
-
0036200510
-
Salinibacter ruber gen. nov., sp. nov., a novel, extremely halophilic member of the Bacteria from saltern crystallizer ponds
-
Anton, J., Oren, A., Benlloch, S., Rodriguez-Valera, F., Amann, R., and Rossello-Mora, R. (2002) Salinibacter ruber gen. nov., sp. nov., a novel, extremely halophilic member of the Bacteria from saltern crystallizer ponds. Int J Syst Evol Microbiol 52: 485-491.
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 485-491
-
-
Anton, J.1
Oren, A.2
Benlloch, S.3
Rodriguez-Valera, F.4
Amann, R.5
Rossello-Mora, R.6
-
5
-
-
77955345887
-
Trans locus inhibitors limit concomitant polysaccharide synthesis in the human gut symbiont Bacteroides fragilis
-
Chatzidaki-Livanis, M., Weinacht, K.G., and Comstock, L.E. (2010) Trans locus inhibitors limit concomitant polysaccharide synthesis in the human gut symbiont Bacteroides fragilis. Proc Natl Acad Sci USA 107: 11976-11980.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 11976-11980
-
-
Chatzidaki-Livanis, M.1
Weinacht, K.G.2
Comstock, L.E.3
-
6
-
-
58149200948
-
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
-
Cole, J.R., Wang, Q., Cardenas, E., Fish, J., Chai, B., Farris, R.J., etal. (2009) The Ribosomal Database Project: improved alignments and new tools for rRNA analysis. Nucleic Acids Res 37: D141-D145.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Cole, J.R.1
Wang, Q.2
Cardenas, E.3
Fish, J.4
Chai, B.5
Farris, R.J.6
-
7
-
-
0036837747
-
A gene encoding a homologue of dolichol phosphate-beta-D-mannose synthase is required for infection of Streptomyces coelicolor A3(2) by phage (phi)C31
-
Cowlishaw, D.A., and Smith, M.C. (2002) A gene encoding a homologue of dolichol phosphate-beta-D-mannose synthase is required for infection of Streptomyces coelicolor A3(2) by phage (phi)C31. J Bacteriol 184: 6081-6083.
-
(2002)
J Bacteriol
, vol.184
, pp. 6081-6083
-
-
Cowlishaw, D.A.1
Smith, M.C.2
-
8
-
-
15244340417
-
Human symbionts use a host-like pathway for surface fucosylation
-
Coyne, M.J., Reinap, B., Lee, M.M., and Comstock, L.E. (2005) Human symbionts use a host-like pathway for surface fucosylation. Science 307: 1778-1781.
-
(2005)
Science
, vol.307
, pp. 1778-1781
-
-
Coyne, M.J.1
Reinap, B.2
Lee, M.M.3
Comstock, L.E.4
-
9
-
-
51349110626
-
Role of glycan synthesis in colonization of the mammalian gut by the bacterial symbiont Bacteroides fragilis
-
Coyne, M.J., Chatzidaki-Livanis, M., Paoletti, L.C., and Comstock, L.E. (2008) Role of glycan synthesis in colonization of the mammalian gut by the bacterial symbiont Bacteroides fragilis. Proc Natl Acad Sci USA 105: 13099-13104.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 13099-13104
-
-
Coyne, M.J.1
Chatzidaki-Livanis, M.2
Paoletti, L.C.3
Comstock, L.E.4
-
10
-
-
80053614489
-
UDP-glucuronic acid decarboxylases of Bacteroides fragilis and their prevalence in bacteria
-
Coyne, M.J., Fletcher, C.M., Reinap, B., and Comstock, L.E. (2011) UDP-glucuronic acid decarboxylases of Bacteroides fragilis and their prevalence in bacteria. J Bacteriol 193: 5252-5259.
-
(2011)
J Bacteriol
, vol.193
, pp. 5252-5259
-
-
Coyne, M.J.1
Fletcher, C.M.2
Reinap, B.3
Comstock, L.E.4
-
11
-
-
0029965091
-
Definition of the full extent of glycosylation of the 45-kilodalton glycoprotein of Mycobacterium tuberculosis
-
Dobos, K.M., Khoo, K.H., Swiderek, K.M., Brennan, P.J., and Belisle, J.T. (1996) Definition of the full extent of glycosylation of the 45-kilodalton glycoprotein of Mycobacterium tuberculosis. J Bacteriol 178: 2498-2506.
-
(1996)
J Bacteriol
, vol.178
, pp. 2498-2506
-
-
Dobos, K.M.1
Khoo, K.H.2
Swiderek, K.M.3
Brennan, P.J.4
Belisle, J.T.5
-
12
-
-
80053602806
-
O-linked glycosylation of the PilA pilin protein of Francisella tularensis: identification of the endogenous protein-targeting oligosaccharyltransferase and characterization of the native oligosaccharide
-
Egge-Jacobsen, W., Salomonsson, E.N., Aas, F.E., Forslund, A.L., Winther-Larsen, H.C., Maier, J., etal. (2011) O-linked glycosylation of the PilA pilin protein of Francisella tularensis: identification of the endogenous protein-targeting oligosaccharyltransferase and characterization of the native oligosaccharide. J Bacteriol 193: 5487-5497.
-
(2011)
J Bacteriol
, vol.193
, pp. 5487-5497
-
-
Egge-Jacobsen, W.1
Salomonsson, E.N.2
Aas, F.E.3
Forslund, A.L.4
Winther-Larsen, H.C.5
Maier, J.6
-
13
-
-
0024397663
-
Identification, isolation and partial characterization of Mycobacterium tuberculosis glycoprotein antigens
-
Espitia, C., and Mancilla, R. (1989) Identification, isolation and partial characterization of Mycobacterium tuberculosis glycoprotein antigens. Clin Exp Immunol 77: 378-383.
-
(1989)
Clin Exp Immunol
, vol.77
, pp. 378-383
-
-
Espitia, C.1
Mancilla, R.2
-
14
-
-
77952361109
-
New insights into protein O-mannosylation in actinomycetes
-
Espitia, C., Servín-González, L., and Mancilla, R. (2010) New insights into protein O-mannosylation in actinomycetes. Mol Biosyst 6: 775-781.
-
(2010)
Mol Biosyst
, vol.6
, pp. 775-781
-
-
Espitia, C.1
Servín-González, L.2
Mancilla, R.3
-
15
-
-
64249095086
-
A general O-glycosylation system important to the physiology of a major human intestinal symbiont
-
Fletcher, C.M., Coyne, M.J., Villa, O.F., Chatzidaki-Livanis, M., and Comstock, L.E. (2009) A general O-glycosylation system important to the physiology of a major human intestinal symbiont. Cell 137: 321-331.
-
(2009)
Cell
, vol.137
, pp. 321-331
-
-
Fletcher, C.M.1
Coyne, M.J.2
Villa, O.F.3
Chatzidaki-Livanis, M.4
Comstock, L.E.5
-
16
-
-
79952797070
-
Theoretical and experimental characterization of the scope of protein O-glycosylation in Bacteroides fragilis
-
Fletcher, C.M., Coyne, M.J., and Comstock, L.E. (2011) Theoretical and experimental characterization of the scope of protein O-glycosylation in Bacteroides fragilis. J Biol Chem 286: 3219-3226.
-
(2011)
J Biol Chem
, vol.286
, pp. 3219-3226
-
-
Fletcher, C.M.1
Coyne, M.J.2
Comstock, L.E.3
-
17
-
-
69949123813
-
Identifying genetic determinants needed to establish a human gut symbiont in its habitat
-
Goodman, A.L., McNulty, N.P., Zhao, Y., Leip, D., Mitra, R.D., Lozupone, C.A., etal. (2009) Identifying genetic determinants needed to establish a human gut symbiont in its habitat. Cell Host Microbe 6: 279-289.
-
(2009)
Cell Host Microbe
, vol.6
, pp. 279-289
-
-
Goodman, A.L.1
McNulty, N.P.2
Zhao, Y.3
Leip, D.4
Mitra, R.D.5
Lozupone, C.A.6
-
18
-
-
0003242556
-
Structural characterization of the novel O-linked carbohydrate structure of Flavobacterium heparinum heparinase I
-
and () . : .
-
Huang, L., Van Halbeek, H., Eggimann, B., and Zimmermann, J. (1995) Structural characterization of the novel O-linked carbohydrate structure of Flavobacterium heparinum heparinase I. Glycobiology 5: 712.
-
(1995)
Glycobiology
, vol.5
, pp. 712
-
-
Huang, L.1
Van Halbeek, H.2
Eggimann, B.3
Zimmermann, J.4
-
19
-
-
84864072948
-
Identification of a general O-linked protein glycosylation system in Acinetobacter baumannii and its role in virulence and biofilm formation
-
Iwashkiw, J.A., Seper, A., Weber, B.S., Scott, N.E., Vinogradov, E., Stratilo, C., etal. (2012) Identification of a general O-linked protein glycosylation system in Acinetobacter baumannii and its role in virulence and biofilm formation. PLoS Pathog 8: e1002758.
-
(2012)
PLoS Pathog
, vol.8
-
-
Iwashkiw, J.A.1
Seper, A.2
Weber, B.S.3
Scott, N.E.4
Vinogradov, E.5
Stratilo, C.6
-
20
-
-
0041341888
-
Prediction of lipoprotein signal peptides in Gram-negative bacteria
-
Juncker, A.S., Willenbrock, H., Von Heijne, G., Brunak, S., Nielsen, H., and Krogh, A. (2003) Prediction of lipoprotein signal peptides in Gram-negative bacteria. Protein Sci 12: 1652-1662.
-
(2003)
Protein Sci
, vol.12
, pp. 1652-1662
-
-
Juncker, A.S.1
Willenbrock, H.2
Von Heijne, G.3
Brunak, S.4
Nielsen, H.5
Krogh, A.6
-
21
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes
-
Krogh, A., Larsson, B., von Heijne, G., and Sonnhammer, E.L. (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 305: 567-580.
-
(2001)
J Mol Biol
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
von Heijne, G.3
Sonnhammer, E.L.4
-
22
-
-
56949086533
-
The pilin O-glycosylation pathway of pathogenic Neisseria is a general system that glycosylates AniA, an outer membrane nitrite reductase
-
Ku, S.C., Schulz, B.L., Power, P.M., and Jennings, M. (2009) The pilin O-glycosylation pathway of pathogenic Neisseria is a general system that glycosylates AniA, an outer membrane nitrite reductase. Biochem Biophys Res Commun 378: 84-89.
-
(2009)
Biochem Biophys Res Commun
, vol.378
, pp. 84-89
-
-
Ku, S.C.1
Schulz, B.L.2
Power, P.M.3
Jennings, M.4
-
23
-
-
84875445608
-
CDD: conserved domains and protein three-dimensional structure
-
Marchler-Bauer, A., Zheng, C., Chitsaz, F., Derbyshire, M.K., Geer, L.Y., Geer, R.C., etal. (2013) CDD: conserved domains and protein three-dimensional structure. Nucleic Acids Res 41: D348-D352.
-
(2013)
Nucleic Acids Res
, vol.41
-
-
Marchler-Bauer, A.1
Zheng, C.2
Chitsaz, F.3
Derbyshire, M.K.4
Geer, L.Y.5
Geer, R.C.6
-
24
-
-
77958099601
-
Protein glycosylation in bacteria: sweeter than ever
-
Nothaft, H., and Szymanski, C.M. (2010) Protein glycosylation in bacteria: sweeter than ever. Nat Rev Microbiol 8: 765-778.
-
(2010)
Nat Rev Microbiol
, vol.8
, pp. 765-778
-
-
Nothaft, H.1
Szymanski, C.M.2
-
25
-
-
0025891060
-
Immunochemical characterization of two surface polysaccharides of Bacteroides fragilis
-
Pantosti, A., Tzianabos, A.O., Onderdonk, A.B., and Kasper, D.L. (1991) Immunochemical characterization of two surface polysaccharides of Bacteroides fragilis. Infect Immun 59: 2075-2082.
-
(1991)
Infect Immun
, vol.59
, pp. 2075-2082
-
-
Pantosti, A.1
Tzianabos, A.O.2
Onderdonk, A.B.3
Kasper, D.L.4
-
26
-
-
0035253684
-
Fully automated 96-well liquid-liquid extraction for analysis of biological samples by liquid chromatography with tandem mass spectrometry
-
Peng, S.X., Branch, T.M., and King, S.L. (2001) Fully automated 96-well liquid-liquid extraction for analysis of biological samples by liquid chromatography with tandem mass spectrometry. Anal Chem 73: 708-714.
-
(2001)
Anal Chem
, vol.73
, pp. 708-714
-
-
Peng, S.X.1
Branch, T.M.2
King, S.L.3
-
27
-
-
0029040382
-
Novel, specific O-glycosylation of secreted Flavobacterium meningosepticum proteins. Asp-Ser and Asp-Thr-Thr consensus sites
-
Plummer, T.H., Jr, Tarentino, A.L., and Hauer, C.R. (1995) Novel, specific O-glycosylation of secreted Flavobacterium meningosepticum proteins. Asp-Ser and Asp-Thr-Thr consensus sites. J Biol Chem 270: 13192-13196.
-
(1995)
J Biol Chem
, vol.270
, pp. 13192-13196
-
-
Plummer Jr., T.H.1
Tarentino, A.L.2
Hauer, C.R.3
-
28
-
-
84877819911
-
Cross-glycosylation of proteins in Bacteroidales species
-
Posch, G., Pabst, M., Neumann, L., Coyne, M.J., Altmann, F., Messner, P., etal. (2013) Cross-glycosylation of proteins in Bacteroidales species. Glycobiology 23: 568-577.
-
(2013)
Glycobiology
, vol.23
, pp. 568-577
-
-
Posch, G.1
Pabst, M.2
Neumann, L.3
Coyne, M.J.4
Altmann, F.5
Messner, P.6
-
29
-
-
0028979351
-
Detailed structural analysis of a novel, specific O-linked glycan from the prokaryote Flavobacterium meningosepticum
-
Reinhold, B.B., Hauer, C.R., Plummer, T.H., and Reinhold, V.N. (1995) Detailed structural analysis of a novel, specific O-linked glycan from the prokaryote Flavobacterium meningosepticum. J Biol Chem 270: 13197-13203.
-
(1995)
J Biol Chem
, vol.270
, pp. 13197-13203
-
-
Reinhold, B.B.1
Hauer, C.R.2
Plummer, T.H.3
Reinhold, V.N.4
-
30
-
-
0029798568
-
Rhodothermus obamensis sp. nov., a modern lineage of extremely thermophilic marine bacteria
-
Sako, Y., Takai, K., Ishida, Y., Uchida, A., and Katayama, Y. (1996) Rhodothermus obamensis sp. nov., a modern lineage of extremely thermophilic marine bacteria. Int J Syst Bacteriol 46: 1099-1104.
-
(1996)
Int J Syst Bacteriol
, vol.46
, pp. 1099-1104
-
-
Sako, Y.1
Takai, K.2
Ishida, Y.3
Uchida, A.4
Katayama, Y.5
-
31
-
-
0029791705
-
A strategy for identifying gel-separated proteins in sequence databases by MS alone
-
Shevchenko, A., Wilm, M., Vorm, O., Jensen, O.N., Podtelejnikov, A.V., Neubauer, G., etal. (1996) A strategy for identifying gel-separated proteins in sequence databases by MS alone. Biochem Soc Trans 24: 893-896.
-
(1996)
Biochem Soc Trans
, vol.24
, pp. 893-896
-
-
Shevchenko, A.1
Wilm, M.2
Vorm, O.3
Jensen, O.N.4
Podtelejnikov, A.V.5
Neubauer, G.6
-
32
-
-
0017066835
-
Chemical characterization of the regularly arranged surface layers of Clostridium thermosaccharolyticum and Clostridium thermohydrosulfuricum
-
Sleytr, U.B., and Thorne, K.J. (1976) Chemical characterization of the regularly arranged surface layers of Clostridium thermosaccharolyticum and Clostridium thermohydrosulfuricum. J Bacteriol 126: 377-383.
-
(1976)
J Bacteriol
, vol.126
, pp. 377-383
-
-
Sleytr, U.B.1
Thorne, K.J.2
-
33
-
-
0031614678
-
A hidden Markov model for predicting transmembrane helices in protein sequences
-
Sonnhammer, E.L., von Heijne, G., and Krogh, A. (1998) A hidden Markov model for predicting transmembrane helices in protein sequences. Proc Int Conf Intell Syst Mol Biol 6: 175-182.
-
(1998)
Proc Int Conf Intell Syst Mol Biol
, vol.6
, pp. 175-182
-
-
Sonnhammer, E.L.1
von Heijne, G.2
Krogh, A.3
-
34
-
-
0025330309
-
The region of a Bacteroides conjugal chromosomal tetracycline resistance element which is responsible for production of plasmidlike forms from unlinked chromosomal DNA might also be involved in transfer of the element
-
Stevens, A.M., Shoemaker, N.B., and Salyers, A.A. (1990) The region of a Bacteroides conjugal chromosomal tetracycline resistance element which is responsible for production of plasmidlike forms from unlinked chromosomal DNA might also be involved in transfer of the element. J Bacteriol 172: 4271-4279.
-
(1990)
J Bacteriol
, vol.172
, pp. 4271-4279
-
-
Stevens, A.M.1
Shoemaker, N.B.2
Salyers, A.A.3
-
35
-
-
0033024228
-
Evidence for a system of general protein glycosylation in Campylobacter jejuni
-
Szymanski, C.M., Yao, R., Ewing, C., Trust, T.J., and Guerry, P. (1999) Evidence for a system of general protein glycosylation in Campylobacter jejuni. Mol Microbiol 32: 1022-1030.
-
(1999)
Mol Microbiol
, vol.32
, pp. 1022-1030
-
-
Szymanski, C.M.1
Yao, R.2
Ewing, C.3
Trust, T.J.4
Guerry, P.5
-
36
-
-
0042902833
-
The COG database: an updated version includes eukaryotes
-
Tatusov, R.L., Fedorova, N.D., Jackson, J.D., Jacobs, A.R., Kiryutin, B., Koonin, E.V., etal. (2003) The COG database: an updated version includes eukaryotes. BMC Bioinformatics 4: 41.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Kiryutin, B.5
Koonin, E.V.6
-
37
-
-
63149098737
-
Broad spectrum O-linked protein glycosylation in the human pathogen Neisseria gonorrhoeae
-
Vik, Å., Aas, F.E., Anonsen, J.H., Bilsborough, S., Schneider, A., Egge-Jacobsen, W., and Koomey, M. (2009) Broad spectrum O-linked protein glycosylation in the human pathogen Neisseria gonorrhoeae. Proc Natl Acad Sci USA 106: 4447-4452.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 4447-4452
-
-
Vik, A.1
Aas, F.E.2
Anonsen, J.H.3
Bilsborough, S.4
Schneider, A.5
Egge-Jacobsen, W.6
Koomey, M.7
-
38
-
-
58149299474
-
Glycosylation of the phosphate binding protein, PstS, in Streptomyces coelicolor by a pathway that resembles protein O-mannosylation in eukaryotes
-
Wehmeier, S., Varghese, A.S., Gurcha, S.S., Tissot, B., Panico, M., Hitchen, P., etal. (2009) Glycosylation of the phosphate binding protein, PstS, in Streptomyces coelicolor by a pathway that resembles protein O-mannosylation in eukaryotes. Mol Microbiol 71: 421-433.
-
(2009)
Mol Microbiol
, vol.71
, pp. 421-433
-
-
Wehmeier, S.1
Varghese, A.S.2
Gurcha, S.S.3
Tissot, B.4
Panico, M.5
Hitchen, P.6
-
39
-
-
79955603120
-
Longitudinal analysis of the prevalence, maintenance, and IgA response to species of the order Bacteroidales in the human gut
-
Zitomersky, N.L., Coyne, M.J., and Comstock, L.E. (2011) Longitudinal analysis of the prevalence, maintenance, and IgA response to species of the order Bacteroidales in the human gut. Infect Immun 79: 2012-2020.
-
(2011)
Infect Immun
, vol.79
, pp. 2012-2020
-
-
Zitomersky, N.L.1
Coyne, M.J.2
Comstock, L.E.3
|