Synthetic DNA: The next generation of big data storage

Bioengineered

Volumn 4, Issue 3, 2013, Pages

  O'Driscoll, Aisling ^a   Sleator, Roy D ^a  

^a Munster Technological University   (Ireland)

Author keywords

[No Author keywords available]

Indexed keywords

SINGLE STRANDED DNA; SYNTHETIC DNA; DNA;

ARTICLE; DATA STORAGE DEVICE; GENE SEQUENCE; POLYMERASE CHAIN REACTION; BIOLOGY; COMPUTER PROGRAM; EQUIPMENT; GENETICS; INFORMATION RETRIEVAL; METHODOLOGY; NUCLEIC ACID DATABASE; SYNTHESIS; DEVICES; PROCEDURES; TRENDS;

COMPUTATIONAL BIOLOGY; DATABASES, NUCLEIC ACID; DNA; INFORMATION STORAGE AND RETRIEVAL; SOFTWARE;

EID: 84877693372     PISSN: 19491018     EISSN: 19491026     Source Type: Journal    
DOI: 10.4161/bioe.24296     Document Type: Article

References (21)

1. Yang H. Genomics and the 'century of biology'. FEBS J 2012; 279:35.
2. Gantz J, Reinsel, D. The Digital Universe in 2020: Big Data, Bigger Digital Shadows, and Biggest Growth in the Far East. IDC iView: IDC Analyze the Future, 2012.
3. Church GM, Gao Y, Kosuri S. Next-generation digital information storage in DNA. Science 2012; 337:1628; PMID:22903519; http://dx.doi.org/10.1126/science. 1226355.
4. Goldman N, Bertone P, Chen S, Dessimoz C, LeProust EM, Sipos B, et al. Towards practical, high-capacity, low-maintenance information storage in synthesized DNA. Nature 2013; 494:77-80; PMID:23354052; http://dx.doi.org/10.1038/nature11875.
5. Kelly TJ Jr., Smith HO. A restriction enzyme from Hemophilus influenzae. II. J Mol Biol 1970; 51:393-409; PMID:5312501; http://dx.doi. org/10.1016/0022-2836(70)90150-6.
6. Smith HO, Wilcox KW. A restriction enzyme from Hemophilus influenzae. I. Purification and general properties. J Mol Biol 1970; 51:379-91; PMID:5312500; http://dx.doi.org/10.1016/0022-2836(70)90149-X.
7. Little JW, Zimmerman SB, Oshinsky CK, Gellert M. Enzymatic joining of DNA strands, II. An enzyme-adenylate intermediate in the dpn-dependent DNA ligase reaction. Proc Natl Acad Sci U S A 1967; 58:2004-11; PMID:4295585; http://dx.doi.org/10.1073/ pnas.58.5.2004.
8. Zimmerman SB, Little JW, Oshinsky CK, Gellert M. Enzymatic joining of DNA strands: a novel reaction of diphosphopyridine nucleotide. Proc Natl Acad Sci U S A 1967; 57:1841-8; PMID:4291949; http://dx.doi. org/10.1073/pnas.57.6.1841.
9. Mullis KB, Faloona FA. Specific synthesis of DNA in vitro via a polymerase-catalyzed chain reaction. Methods Enzymol 1987; 155:335-50; PMID:3431465; http://dx.doi.org/10.1016/0076-6879(87)55023-6.
10. Willerslev E, Cappellini E, Boomsma W, Nielsen R, Hebsgaard MB, Brand TB, et al. Ancient biomolecules from deep ice cores reveal a forested southern Greenland. Science 2007; 317:111-4; PMID:17615355; http:// dx.doi.org/10.1126/science.1141758.
11. Miller W, Drautz DI, Ratan A, Pusey B, Qi J, Lesk AM, et al. Sequencing the nuclear genome of the extinct woolly mammoth. Nature 2008; 456:387-90; PMID:19020620; http://dx.doi.org/10.1038/ nature07446.
12. Thomas MG. The flickering genes of the last mammoths. Mol Ecol 2012; 21:3379-81; PMID:22953331; http://dx.doi.org/10.1111/j.1365-294X.2012.05594.x.
13. Davis J. Microvenus + Biology, contemporary art, genetics. Art J 1996; 55:70-4; http://dx.doi. org/10.2307/777811.
14. Sleator RD. The story of Mycoplasma mycoides JCVIsyn1.0: the forty million dollar microbe. Bioeng Bugs 2010; 1:229-30; PMID:21327053; http://dx.doi. org/10.4161/bbug.1.4.12465.
15. Gibson DG, Glass JI, Lartigue C, Noskov VN, Chuang RY, Algire MA, et al. Creation of a bacterial cell controlled by a chemically synthesized genome. Science 2010; 329:52-6; PMID:20488990; http://dx.doi. org/10.1126/science.1190719.
16. Niedringhaus TP, Milanova D, Kerby MB, Snyder MP, Barron AE. Landscape of next-generation sequencing technologies. Anal Chem 2011; 83:4327-41; PMID:21612267; http://dx.doi.org/10.1021/ ac2010857.
17. Watson JD, Crick FH. Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid. Nature 1953; 171:737-8; PMID:13054692; http://dx.doi. org/10.1038/171737a0.
18. Fehér T, Burland V, Pósfai G. In the fast lane: large-scale bacterial genome engineering. J Biotechnol 2012; 160:72-9; PMID:22406111; http://dx.doi. org/10.1016/j.jbiotec.2012.02.012.
19. Carr PA, Church GM. Genome engineering. Nat Biotechnol 2009; 27:1151-62; PMID:20010598; http://dx.doi.org/10.1038/nbt.1590.
20. Glanz J. The Cloud Factories: Power, Pollution and the Internet. In: Abramson J, ed. New York Times. New York: Arthur Ochs Sulzberger, Jr., 2012.
21. Bonnet J, Subsoontorn P, Endy D. Rewritable digital data storage in live cells via engineered control of recombination directionality. Proc Natl Acad Sci U S A 2012; 109:8884-9; PMID:22615351; http://dx.doi. org/10.1073/pnas.1202344109.