메뉴 건너뛰기




Volumn 9, Issue 5, 2013, Pages 770-777

Qualitative and quantitative characterization of protein-phosphoinositide interactions with liposome-based methods

Author keywords

Isothermal Titration Calorimetry; Liposome Flotation Assays; Multi Angle Laser Light Scattering; Proppin; Small Unilamellar Vesicle

Indexed keywords

AUTOPHAGY PROTEIN 20; AUTOPHAGY PROTEIN 24; CELL PROTEIN; FUNGAL PROTEIN; HOMOLOGOUS WITH SWOLLEN VACUOLE PHENOTYPE 2 PROTEIN; LIPOSOME; PHOSPHATIDYLINOSITOL 3 PHOSPHATE; SNX4 PROTEIN; UNCLASSIFIED DRUG;

EID: 84877342278     PISSN: 15548627     EISSN: 15548635     Source Type: Journal    
DOI: 10.4161/auto.23978     Document Type: Article
Times cited : (22)

References (25)
  • 1
    • 77953762012 scopus 로고    scopus 로고
    • Translation of the phosphoinositide code by PI effectors
    • PMID:20559318
    • Kutateladze TG. Translation of the phosphoinositide code by PI effectors. Nat Chem Biol 2010; 6:507-13; PMID:20559318; http://dx.doi.org/10.1038/ nchembio. 390
    • (2010) Nat Chem Biol , vol.6 , pp. 507-513
    • Kutateladze, T.G.1
  • 2
    • 3142583199 scopus 로고    scopus 로고
    • Svp1p defines a family of phosphatidylinositol 3,5-bisphosphate effectors
    • PMID:15103325
    • Dove SK, Piper RC, McEwen RK, Yu JW, King MC, Hughes DC, et al. Svp1p defines a family of phosphatidylinositol 3,5-bisphosphate effectors. EMBO J 2004; 23:1922-33; PMID:15103325; http://dx.doi.org/10.1038/sj.emboj.7600203
    • (2004) EMBO J , vol.23 , pp. 1922-1933
    • Dove, S.K.1    Piper, R.C.2    McEwen, R.K.3    Yu, J.W.4    King, M.C.5    Hughes, D.C.6
  • 3
    • 62749090535 scopus 로고    scopus 로고
    • Phosphatidylinositol 3,5-bisphosphate and Fab1p/PIKfyve underPPIn endo-lysosome function
    • PMID:19272020
    • Dove SK, Dong K, Kobayashi T, Williams FK, Michell RH. Phosphatidylinositol 3,5-bisphosphate and Fab1p/PIKfyve underPPIn endo-lysosome function. Biochem J 2009; 419:1-13; PMID:19272020; http://dx.doi.org/10.1042/ BJ20081950
    • (2009) Biochem J , vol.419 , pp. 1-13
    • Dove, S.K.1    Dong, K.2    Kobayashi, T.3    Williams, F.K.4    Michell, R.H.5
  • 4
    • 33746867157 scopus 로고    scopus 로고
    • The relevance of the phosphatidylinositolphosphat-binding motif FRRGT of Atg18 and Atg21 for the Cvt pathway and autophagy
    • PMID:16876790
    • Krick R, Tolstrup J, Appelles A, Henke S, Thumm M. The relevance of the phosphatidylinositolphosphat-binding motif FRRGT of Atg18 and Atg21 for the Cvt pathway and autophagy. FEBS Lett 2006; 580:4632-8; PMID:16876790; http://dx.doi.org/10.1016/j.febslet.2006.07.041
    • (2006) FEBS Lett , vol.580 , pp. 4632-4638
    • Krick, R.1    Tolstrup, J.2    Appelles, A.3    Henke, S.4    Thumm, M.5
  • 5
    • 3342951135 scopus 로고    scopus 로고
    • Atg21 is a phosphoinositide binding protein required for efficient lipidation and localization of Atg8 during uptake of aminopeptidase I by selective autophagy
    • PMID:15155809
    • Strømhaug PE, Reggiori F, Guan J, Wang CW, Klionsky DJ. Atg21 is a phosphoinositide binding protein required for efficient lipidation and localization of Atg8 during uptake of aminopeptidase I by selective autophagy. Mol Biol Cell 2004; 15:3553-66; PMID:15155809; http://dx.doi.org/10.1091/mbc. E04-02-0147
    • (2004) Mol Biol Cell , vol.15 , pp. 3553-3566
    • Strømhaug, P.E.1    Reggiori, F.2    Guan, J.3    Wang, C.W.4    Klionsky, D.J.5
  • 6
    • 84864337089 scopus 로고    scopus 로고
    • Structural and functional characterization of the two phosphoinositide binding sites of PROPPINs, a β-propeller protein family
    • PMID:22753491
    • Krick R, Busse RA, Scacioc A, Stephan M, Janshoff A, Thumm M, et al. Structural and functional characterization of the two phosphoinositide binding sites of PROPPINs, a β-propeller protein family. Proc Natl Acad Sci U S A 2012; 109:E2042-9; PMID:22753491; http://dx.doi.org/10.1073/pnas.1205128109
    • (2012) Proc Natl Acad Sci U S A , vol.109
    • Krick, R.1    Busse, R.A.2    Scacioc, A.3    Stephan, M.4    Janshoff, A.5    Thumm, M.6
  • 7
    • 84864960430 scopus 로고    scopus 로고
    • Twosite recognition of phosphatidylinositol 3-phosphate by PROPPINs in autophagy
    • PMID:22704557
    • Baskaran S, Ragusa MJ, Boura E, Hurley JH. Twosite recognition of phosphatidylinositol 3-phosphate by PROPPINs in autophagy. Mol Cell 2012; 47:339-48; PMID:22704557; http://dx.doi.org/10.1016/j.molcel.2012.05.027
    • (2012) Mol Cell , vol.47 , pp. 339-348
    • Baskaran, S.1    Ragusa, M.J.2    Boura, E.3    Hurley, J.H.4
  • 8
    • 84866419794 scopus 로고    scopus 로고
    • Structure-based analyses reveal distinct binding sites for Atg2 and phosphoinositides in Atg18
    • PMID:22851171
    • Watanabe Y, Kobayashi T, Yamamoto H, Hoshida H, Akada R, Inagaki F, et al. Structure-based analyses reveal distinct binding sites for Atg2 and phosphoinositides in Atg18. J Biol Chem 2012; 287:31681-90; PMID:22851171; http://dx.doi.org/10.1074/jbc.M112.397570
    • (2012) J Biol Chem , vol.287 , pp. 31681-31690
    • Watanabe, Y.1    Kobayashi, T.2    Yamamoto, H.3    Hoshida, H.4    Akada, R.5    Inagaki, F.6
  • 9
    • 0035661648 scopus 로고    scopus 로고
    • Cvt18/Gsa12 is required for cytoplasm-to-vacuole transport, pexophagy, and autophagy in Saccharomyces cerevisiae and Pichia pastoris
    • PMID:11739783
    • Guan J, Stromhaug PE, George MD, Habibzadegah-Tari P, Bevan A, Dunn WA Jr., et al. Cvt18/Gsa12 is required for cytoplasm-to-vacuole transport, pexophagy, and autophagy in Saccharomyces cerevisiae and Pichia pastoris. Mol Biol Cell 2001; 12:3821-38; PMID:11739783
    • (2001) Mol Biol Cell , vol.12 , pp. 3821-3823
    • Guan, J.1    Stromhaug, P.E.2    George, M.D.3    Habibzadegah-Tari, P.4    Bevan, A.5    Dunn Jr., W.A.6
  • 10
    • 0035834395 scopus 로고    scopus 로고
    • Autophagy and the cytoplasm to vacuole targeting pathway both require Aut10p
    • PMID:11707261
    • Barth H, Meiling-Wesse K, Epple UD, Thumm M. Autophagy and the cytoplasm to vacuole targeting pathway both require Aut10p. FEBS Lett 2001; 508:23-8; PMID:11707261; http://dx.doi.org/10.1016/S0014-5793(01)03016-2
    • (2001) FEBS Lett , vol.508 , pp. 23-28
    • Barth, H.1    Meiling-Wesse, K.2    Epple, U.D.3    Thumm, M.4
  • 11
    • 57349198328 scopus 로고    scopus 로고
    • Piecemeal microautophagy of the nucleus requires the core macroautophagy genes
    • PMID:18701704
    • Krick R, Muehe Y, Prick T, Bremer S, Schlotterhose P, Eskelinen EL, et al. Piecemeal microautophagy of the nucleus requires the core macroautophagy genes. Mol Biol Cell 2008; 19:4492-505; PMID:18701704; http://dx.doi.org/10. 1091/mbc.E08-04-0363
    • (2008) Mol Biol Cell , vol.19 , pp. 4492-4505
    • Krick, R.1    Muehe, Y.2    Prick, T.3    Bremer, S.4    Schlotterhose, P.5    Eskelinen, E.L.6
  • 12
    • 4444260908 scopus 로고    scopus 로고
    • Atg21 is required for effective recruitment of Atg8 to the preautophagosomal structure during the Cvt pathway
    • PMID:15194695
    • Meiling-Wesse K, Barth H, Voss C, Eskelinen EL, Epple UD, Thumm M. Atg21 is required for effective recruitment of Atg8 to the preautophagosomal structure during the Cvt pathway. J Biol Chem 2004; 279:37741-50; PMID:15194695; http://dx.doi.org/10.1074/jbc.M401066200
    • (2004) J Biol Chem , vol.279 , pp. 37741-37750
    • Meiling-Wesse, K.1    Barth, H.2    Voss, C.3    Eskelinen, E.L.4    Epple, U.D.5    Thumm, M.6
  • 13
    • 58049198294 scopus 로고    scopus 로고
    • VAC14 nucleates a protein complex essential for the acute interconversion of PI3P and PI(3,5)P(2) in yeast and mouse
    • PMID:19037259
    • Jin N, Chow CY, Liu L, Zolov SN, Bronson R, Davisson M, et al. VAC14 nucleates a protein complex essential for the acute interconversion of PI3P and PI(3,5)P(2) in yeast and mouse. EMBO J 2008; 27:3221-34; PMID:19037259; http://dx.doi.org/10.1038/emboj.2008.248
    • (2008) EMBO J , vol.27 , pp. 3221-3234
    • Jin, N.1    Chow, C.Y.2    Liu, L.3    Zolov, S.N.4    Bronson, R.5    Davisson, M.6
  • 14
    • 35848929068 scopus 로고    scopus 로고
    • Atg18 regulates organelle morphology and Fab1 kinase activity independent of its membrane recruitment by phosphatidylinositol 3,5-bisphosphate
    • PMID:17699591
    • Efe JA, Botelho RJ, Emr SD. Atg18 regulates organelle morphology and Fab1 kinase activity independent of its membrane recruitment by phosphatidylinositol 3,5-bisphosphate. Mol Biol Cell 2007; 18:4232-44; PMID:17699591; http://dx.doi.org/10.1091/mbc.E07-04-0301
    • (2007) Mol Biol Cell , vol.18 , pp. 4232-4244
    • Efe, J.A.1    Botelho, R.J.2    Emr, S.D.3
  • 15
    • 33746288421 scopus 로고    scopus 로고
    • Determining selectivity of phosphoinositide-binding domains
    • PMID:16829131
    • Narayan K, Lemmon MA. Determining selectivity of phosphoinositide-binding domains. Methods 2006; 39:122-33; PMID:16829131; http://dx.doi.org/10.1016/j. ymeth.2006.05.006
    • (2006) Methods , vol.39 , pp. 122-133
    • Narayan, K.1    Lemmon, M.A.2
  • 16
    • 1642367563 scopus 로고    scopus 로고
    • Genome-wide analysis of membrane targeting by S. cerevisiae pleckstrin homology domains
    • PMID:15023338
    • Yu JW, Mendrola JM, Audhya A, Singh S, Keleti D, DeWald DB, et al. Genome-wide analysis of membrane targeting by S. cerevisiae pleckstrin homology domains. Mol Cell 2004; 13:677-88; PMID:15023338; http://dx.doi.org/10.1016/ S1097-2765(04)00083-8
    • (2004) Mol Cell , vol.13 , pp. 677-688
    • Yu, J.W.1    Mendrola, J.M.2    Audhya, A.3    Singh, S.4    Keleti, D.5    DeWald, D.B.6
  • 17
    • 1542297734 scopus 로고    scopus 로고
    • Determinants of liposome fusion mediated by synaptic SNARE proteins
    • PMID:14981239
    • Schuette CG, Hatsuzawa K, Margittai M, Stein A, Riedel D, Küster P, et al. Determinants of liposome fusion mediated by synaptic SNARE proteins. Proc Natl Acad Sci U S A 2004; 101:2858-63; PMID:14981239; http://dx.doi.org/10. 1073/pnas.0400044101
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 2858-2863
    • Schuette, C.G.1    Hatsuzawa, K.2    Margittai, M.3    Stein, A.4    Riedel, D.5    Küster, P.6
  • 18
    • 0031806820 scopus 로고    scopus 로고
    • Vesicle size distributions measured by flow field-flow fractionation coupled with multiangle light scattering
    • PMID:9635780
    • Korgel BA, van Zanten JH, Monbouquette HG. Vesicle size distributions measured by flow field-flow fractionation coupled with multiangle light scattering. Biophys J 1998; 74:3264-72; PMID:9635780; http://dx.doi.org/10.1016/ S0006-3495(98)78033-6
    • (1998) Biophys J , vol.74 , pp. 3264-3272
    • Korgel, B.A.1    Van Zanten, J.H.2    Monbouquette, H.G.3
  • 21
    • 0014540830 scopus 로고
    • A new, sensitive determination of phosphate
    • PMID:5791084
    • Eibl H, Lands WE. A new, sensitive determination of phosphate. Anal Biochem 1969; 30:51-7; PMID:5791084; http://dx.doi.org/10.1016/0003-2697(69) 90372-8
    • (1969) Anal Biochem , vol.30 , pp. 51-57
    • Eibl, H.1    Lands, W.E.2
  • 22
    • 53549091843 scopus 로고    scopus 로고
    • Dissecting the localization and function of Atg18, Atg21 and Ygr223c
    • PMID:18769150
    • Krick R, Henke S, Tolstrup J, Thumm M. Dissecting the localization and function of Atg18, Atg21 and Ygr223c. Autophagy 2008; 4:896-910; PMID:18769150
    • (2008) Autophagy , vol.4 , pp. 896-910
    • Krick, R.1    Henke, S.2    Tolstrup, J.3    Thumm, M.4
  • 23
    • 14844294424 scopus 로고    scopus 로고
    • Protein production by auto-induction in high density shaking cultures
    • PMID:15915565
    • Studier FW. Protein production by auto-induction in high density shaking cultures. Protein Expr Purif 2005; 41:207-34; PMID:15915565; http://dx.doi.org/10.1016/j.pep.2005.01.016
    • (2005) Protein Expr Purif , vol.41 , pp. 207-234
    • Studier, F.W.1
  • 25
    • 84862630110 scopus 로고    scopus 로고
    • Membrane fusion intermediates via directional and full assembly of the snare complex
    • PMID:22653732
    • Hernandez JM, Stein A, Behrmann E, Riedel D, Cypionka A, Farsi Z, et al. Membrane fusion intermediates via directional and full assembly of the SNARE complex. Science 2012; 336:1581-4; PMID:22653732; http://dx.doi.org/10.1126/ science. 1221976
    • (2012) Science , vol.336 , pp. 1581-1584
    • Hernandez, J.M.1    Stein, A.2    Behrmann, E.3    Riedel, D.4    Cypionka, A.5    Farsi, Z.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.