Biotransformation of lepidocrocite in the presence of quinones and flavins

Geochimica et Cosmochimica Acta

Volumn 114, Issue , 2013, Pages 144-155

  Bae, Sungjun ^a   Lee, Woojin ^a  

^a Korea Advanced Institute of Science and Technology (KAIST)   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIUM; BIOTRANSFORMATION; CONCENTRATION (COMPOSITION); EXPERIMENTAL STUDY; GOETHITE; LEPIDOCROCITE; VIVIANITE;

BACTERIA (MICROORGANISMS); SHEWANELLA PUTREFACIENS;

EID: 84877320565     PISSN: 00167037     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gca.2013.03.041     Document Type: Article

References (39)

1. Albert A. (1950) The metal-binding properties of riboflavin. Biochem. J. 47: xxvii.
2. Albert A. Quantitative studies of the avidity of naturally occurring substances for trace metals. III. Pteridines, riboflavin and purines. Biochem. J. 1953, 54:646-654.
3. Anastácio A.S., Harris B., Yoo H.-I., Fabris J.D., Stucki J.W. Limitations of the ferrozine method for quantitative assay of mineral systems for ferrous and total iron. Geochim. Cosmochim. Acta 2008, 72:5001-5008.
4. Bae S., Lee W. Enhanced reductive degradation of carbon tetrachloride by biogenic vivianite and Fe(II). Geochim. Cosmochim. Acta 2012, 85:170-186.
5. Benz M., Schink B., Brune A. Humic acid reduction by Propionibacterium freudenreichii and other fermenting bacteria. Appl. Environ. Microbiol. 1998, 64:4507-4512.
6. Borch T., Masue Y., Kukkadapu R.K., Fendorf S. Phosphate imposed limitations on biological reduction and alteration of ferrihydrite. Environ. Sci. Technol. 2007, 41:166-172.
7. Cornell R.M., Schwertmann U. The Iron Oxides: Structure, Properties, Reactions, Occurrences, and Uses 2003, Wiley-VCH, Weinheim. second ed.
8. Dong H., Fredrickson J.K., Kennedy D.W., Zachara J.M., Kukkadapu R.K., Onstott T.C. Mineral transformations associated with the microbial reduction of magnetite. Chem. Geol. 2000, 169:299-318.
9. Fredrickson J.K., Zachara J.M., Kennedy D.W., Dong H., Onstott T.C., Hinman N.W., Li S. Biogenic iron mineralization accompanying the dissimilatory reduction of hydrous ferric oxide by a groundwater bacterium. Geochim. Cosmochim. Acta 1998, 62:3239-3257.
10. Fujie K., Hu H.-Y., Tanaka H., Urano K., Saitou K., Katayama A. Analysis of respiratory quinones in soil for characterization of microbiota. Soil Sci. Plant Nutr. 1998, 44:393-404.
11. Handler R.M., Beard B.L., Johnson C.M., Scherer M.M. Atom exchange between aqueous Fe(II) and goethite: an Fe isotope tracer study. Environ. Sci. Technol. 2009, 43:1102-1107.
12. Heidelberg J.F., Paulsen I.T., Nelson K.E., Gaidos E.J., Nelson W.C., Read T.D., Eisen J.A., Seshadri R., Ward N., Methe B., Clayton R.A., Meyer T., Tsapin A., Scott J., Beanan M., Brinkac L., Daugherty S., DeBoy R.T., Dodson R.J., Durkin A.S., Haft D.H., Kolonay J.F., Madupu R., Peterson J.D., Umayam L.A., White O., Wolf A.M., Vamathevan J., Weidman J., Impraim M., Lee K., Berry K., Lee C., Mueller J., Khouri H., Gill J., Utterback T.R., McDonald L.A., Feldblyum T.V., Smith H.O., Venter J.C., Nealson K.H., Fraser C.M. Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis. Nat. Biotechnol. 2002, 20:1118-1123.
13. Kukkadapu R.K., Zachara J.M., Fredrickson J.K., Kennedy D.W. Biotransformation of two-line silica-ferrihydrite by a dissimilatory Fe(III)-reducing bacterium: formation of carbonate green rust in the presence of phosphate. Geochim. Cosmochim. Acta 2004, 68:2799-2814.
14. Lee W., Batchelor B. Reductive dechlorination of chlorinated ethylenes by iron-bearing soil minerals. 2. Green rust. Environ. Sci. Technol. 2002, 36:5348-5354.
15. Lovley D.R., Coates J.D., Blunt-Harris E.L., Phillips E.J.P., Wood-ward J.C. Humic substances as electron acceptors for microbial respiration. Nature 1996, 382:445-448.
16. Lovley D.R., Fraga J.L., Blunt-Harris E.L., Hayes L.A., Phillips E.J.P., Coates J.D. Humic substances as a mediator for microbially catalyzed metal reduction. Acta Hydrochim. Hydrobiol. 1998, 26:152-157.
17. Maithreepala R.A., Doong R.-A. Transformation of carbon tetrachloride by biogenic iron species in the presence of Geobacter sulfurreducens and electron shuttles. J. Hazard. Mater. 2009, 164:337-344.
18. Marsili E., Baron D.B., Shikhare I.D., Coursolle D., Gralnick J.A., Bond D.R. Shewanella secretes flavins that mediate extracellular electron transfer. Proc. Natl. Acad. Sci. U.S.A. 2008, 105:3968-3973.
19. McCormick M.L., Adriaens P. Carbon tetrachloride transformation on the surface of nanoscale biogenic magnetite particles. Environ. Sci. Technol. 2004, 38:1045-1053.
20. McCormick M.L., Bouwer E.J., Adriaens P. Carbon tetrachloride transformation in a model iron-reducing culture: relative kinetics of biotic and abiotic reactions. Environ. Sci. Technol. 2002, 36:403-410.
21. O'Loughlin E.J. Effects of electron transfer mediators on the bioreduction of lepidocrocite (gamma-FeOOH) by Shewanella putrefaciens CN32. Environ. Sci. Technol. 2008, 42:6876-6882.
22. O'Loughlin E.J., Gorski C.A., Scherer M.M., Boyanov M.I., Kemner K.M. Effects of oxyanions, natural organic matter, and bacterial cell numbers on the bioreduction of lepidocrocite (γ-FeOOH) and the formation of secondary mineralization products. Environ. Sci. Technol. 2010, 44:4570-4576.
23. III oxides. Environ. Sci. Technol. 2010, 44:1656-1661.
24. Perez-Gonzalez T., Jimenez-Lopez C., Neal A.L., Rull-Perez F., Rodriquez-Navarro A., Fernandez-Vivas A., Ianez-Pareja E. Magnetite biomineralization induced by Shewanella oneidensis. Geochim. Cosmochim. Acta 2010, 74:967-979.
25. 3) growth catalyzed by Fe(II). Environ. Sci. Technol. 2010, 44:61-67.
26. Schwertmann U., Taylor R.M. The transformation of lepidocrocite to goethite. Clays Clay Miner. 1972, 20:151-158.
27. Sherman D.M. Electronic structures of iron(III) and manganese(IV) (hydr)oxide minerals: thermodynamics of photochemical reductive dissolution in aquatic environments. Geochim. Cosmochim. Acta 2005, 69:3249-3255.
28. Shi Z., Zachara J. M., Wang Z., Shi L., Kennedy D. W. and Fredrickson J. K. (2011) Reductive mineralization of Fe(III) oxides in the presence of flavins and organic ligands. In Proceedings of 242nd ACS National Meeting & Exposition, Denver, Colorado, Aug 29-Sept 1, 2011, Division of Geochemistry 33. pp. 115.
29. Skovbjerg L.L., Stipp S.L.S., Utsunomiya S., Ewing R.C. The mechanisms of reduction of hexavalent chromium by green rust sodium sulphate: formation of Cr-goethite. Geochim. Cosmochim. Acta 2006, 70:3582-3592.
30. Stookey L.L. Ferrozine - a new spectrophotometric reagent for iron. Anal. Chem. 1970, 42:779-781.
31. Straub K.L., Schink B. Evaluation of electron-shuttling compounds in microbial ferric iron reduction. FEMS Microbiol. Lett. 2003, 220:229-233.
32. Torsvik V., SØrheim R., Goksoyr J. Total bacterial diversity in soil and sediment communities - a review. J. Ind. Microbiol. 1996, 17:170-178.
33. Turick C.E., Caccavo, Tisa L.S. Electron transfer from Shewanella algae BrY to hydrous ferric oxide is mediated by cell-associated melanin. FEMS Microbiol. Lett. 2003, 220:99-104.
34. van der Zee F. P. (2002) Anaerobic azo dye reduction. Ph. D. thesis, Wageningen Univ.
35. Veeramani H., Alessi D.S., Suvorova E.I., Lezama-Pacheco J.S., Stubbs J.E., Sharp J.O., Dippon U., Kappler A., Bargar J.R., Bernier-Latmani R. Products of abiotic U(VI) reduction by biogenic magnetite and vivianite. Geochim. Cosmochim. Acta 2011, 75:2512-2528.
36. von Canstein H., Ogawa J., Shimizu S., Lloyd J.R. Secretion of flavins by Shewanella species and their role in extracellular electron transfer. Appl. Environ. Microbiol. 2008, 74:615-623.
37. Wu Z., Yuan L., Jia N., Wang Y., Sun L. Microbial biomineralization of iron seepage water: implication for the iron ores formation in intertidal zone of Zhoushan Archipelago, East China Sea. Geochem. J. 2009, 43:167-177.
38. Yang L., Steefel C.I., Marcus M.A., Bargar J.R. Kinetics of Fe(II)-catalyzed transformation of 6-line ferrihydrite under anaerobic flow conditions. Environ. Sci. Technol. 2010, 44:5469-5475.
39. Zachara J.M., Fredrickson J.K., Li S.W., Kennedy D.W., Smith S.C., Gassman P.L. Bacterial reduction of crystalline Fe(III) oxides in single phase suspensions and subsurface materials. Am. Mineral. 1998, 83:1426-1443.