Comparative proteome analysis of bifidobacterium longum subsp. infantis grown on β-Glucans from different sources and a model for their utilization

Journal of Agricultural and Food Chemistry

Volumn 61, Issue 18, 2013, Pages 4360-4370

  Zhao, Jinyang ^a   Cheung, Peter C K ^a  

^a CHINESE UNIVERSITY OF HONG KONG   (Hong Kong)

Author keywords

glucan; Bifidobacterium longum subsp. infantis; fermentation; proteome

Indexed keywords

ATP-BINDING CASSETTE; BIFIDOBACTERIUM LONGUM; COMPARATIVE PROTEOME ANALYSIS; DEGRADATION PATHWAYS; METABOLIC PATHWAYS; PHOSPHOTRANSFERASE SYSTEM; TRANSCRIPTIONAL LEVELS; TWO-DIMENSIONAL DIFFERENCE GEL ELECTROPHORESIS;

ELECTROPHORESIS; ENZYME ACTIVITY; FERMENTATION; METABOLISM; PROTEINS; SEAWEED; TRANSCRIPTION;

POLYSACCHARIDES;

BETA GLUCAN; PREBIOTIC AGENT; PROBIOTIC AGENT; PROTEOME;

AGARICALES; ARTICLE; BIFIDOBACTERIUM; CARBOHYDRATE METABOLISM; CHEMISTRY; COMPARATIVE STUDY; GROWTH, DEVELOPMENT AND AGING; HORDEUM; LAMINARIA; METABOLISM; METHODOLOGY; PROTEOMICS; REAL TIME POLYMERASE CHAIN REACTION; TANDEM MASS SPECTROMETRY; TWO DIMENSIONAL DIFFERENCE GEL ELECTROPHORESIS;

AGARICALES; BETA-GLUCANS; BIFIDOBACTERIUM; CARBOHYDRATE METABOLISM; HORDEUM; LAMINARIA; METABOLIC NETWORKS AND PATHWAYS; PREBIOTICS; PROBIOTICS; PROTEOME; PROTEOMICS; REAL-TIME POLYMERASE CHAIN REACTION; TANDEM MASS SPECTROMETRY; TWO-DIMENSIONAL DIFFERENCE GEL ELECTROPHORESIS;

EID: 84877272638     PISSN: 00218561     EISSN: 15205118     Source Type: Journal    
DOI: 10.1021/jf400792j     Document Type: Article

References (36)

1. Gibson, G. R.; Roberfroid, M. B. Dietary modulation of the human colonic microbiota: Introducing the concept of prebiotics J. Nutr. 1995, 125, 1401-1412
2. Hughes, S. A.; Shewry, P. R.; Gibson, G. R.; McCleary, B. V.; Rastall, R. A. In vitro fermentation of oat and barley derived β-glucans by human faecal microbiota FEMS Microbiol. Ecol. 2008, 64, 482-493
3. Zhao, J.; Cheung, P. C. K. Fermentation of β-glucans derived from different sources by bifidobacteria: Evaluation of their bifidogenic effect J. Agric. Food Chem. 2011, 59, 5986-5992
4. Michel, C.; Lahaye, M.; Bonnet, C.; Mabeau, S.; Barry, J. L. In vitro fermentation by human faecal bacteria of total and purified dietary fibres from brown seaweeds Br. J. Nutr. 1996, 75, 263-280
5. Shimizu, J.; Tsuchihashi, N.; Kudoh, K.; Wada, M.; Takita, T.; Innami, S. Dietary Curdlan increases proliferation of bifidobacteria in the cecum of rats Biosci. Biotechnol. Biochem. 2001, 65, 466-469
6. Tao, Y.; Zhang, L.; Cheung, P. C. K. Physicochemical properties and antitumor activities of water-soluble native and sulfated hyperbranched mushroom polysaccharides Carbohydr. Res. 2006, 341, 2261-2269
7. Wong, K. H.; Wong, K. Y.; Kwan, H. S.; Cheung, P. C. K. Dietary fibers from mushroom sclerotia: 3. In vitro fermentability using human fecal microflora J. Agric. Food Chem. 2005, 53, 9407-9412
8. Gao, S.; Lai, C. K. M.; Cheung, P. C. K. Nondigestible carbohydrates isolated from medicinal mushroom sclerotia as novel prebiotics Int. J. Med. Mushrooms 2009, 11, 1-8
9. Guarner, F.; Schaafsma, G. J. Probiotics Int. J. Food Microbiol. 1998, 39, 237-238
10. Pokusaeva, K.; Fitzgerald, G. F.; van Sinderen, D. Carbohydrate metabolism in Bifidobacteria Genes Nutr. 2011, 6, 285-306
11. Schell, M. A.; Karmirantzou, M.; Snel, B.; Vilanova, D.; Berger, B.; Pessi, G.; Zwahlen, M. C.; Desiere, F.; Bork, P.; Delley, M.; Pridmore, R. D.; Arigoni, F. The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 14422-14427
12. Walker, A.; Cerdeño-Tárraga, A.; Bentley, S. Faecal matters Nat. Rev. Microbiol. 2006, 4, 572-573
13. Sela, D. A.; Chapman, J.; Adeuya, A.; Kim, J. H.; Chen, F.; Whitehead, T. R.; Lapidus, A.; Rokhsar, D. S.; Lebrilla, C. B.; German, J. B.; Price, N. P.; Richardson, P. M.; Mills, D. A. The genome sequence of Bifidobacterium longum subsp. infantis reveals adaptations for milk utilization within the infant microbiome Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 18964-18969
14. Yuan, J.; Zhu, L.; Liu, X.; Li, T.; Zhang, Y.; Ying, T.; Wang, B.; Wang, J.; Dong, H.; Feng, E.; Li, Q.; Wang, J.; Wang, H.; Wei, K.; Zhang, X.; Huang, C.; Huang, P.; Huang, L.; Zeng, M.; Wang, H. A proteome reference map and proteomic analysis of Bifidobacterium longum NCC2705 Mol. Cell. Proteomics 2006, 5, 1105-1118
15. Miller, G. L. Use of dinitrosalicylic acid reagent for determination of reducing sugar Anal. Chem. 1959, 31, 426-428
16. Yang, S.; Qiaojuan, Y.; Jiang, Z.; Fan, G.; Wang, L. Biochemical characterization of a novel thermostable β-1,3-1,4- glucanase (Lichenase) from Paecilomyces thermophila J. Agric. Food Chem. 2008, 56, 5345-5351
17. Peralta, R. M.; Kadowaki, M. K.; Terenzi, H. F.; Jorge, J. A. A highly thermostable β-glucosidase activity from the thermophilic fungus Humicola grisea var. thermoidea: purification and biochemical characterization FEMS Microbiol. Lett. 1997, 146, 291-295
18. Yang, S.; Jiang, Z.; Yan, Q.; Zhu, H. Characterization of a thermostable extracellular β-glucosidase with activities of exoglucanase and transglycosylation from Paecilomyces thermophila J. Agric. Food Chem. 2008, 56, 602-608
19. Cummings, J. H.; Macfarlane, G. T. The control and consequences of bacterial fermentation in the human colon J. Appl. Bacteriol. 1991, 70, 443-459
20. Ruiz, L.; Couté, Y.; Sánchez, B.; De los Reyes-Gavilán, C. G.; Sanchez, J. C.; Margolles, A. The cell-envelope proteome of Bifidobacterium longum in an in vitro bile environment Microbiology 2009, 155, 957-967
21. Degnan, B. A.; Macfarlane, G. T. Transport and metabolism of glucose and arabinose in Bifidobacterium breve Arch. Microbiol. 1993, 160, 144-151
22. Parche, S.; Amon, J.; Jankovic, I.; Rezzonico, E.; Beleut, M.; BarutcÌu, H.; Schendel, I.; Eddy, M. P.; Burkovski, A.; Arigoni, F.; Titgemeyer, F. Sugar transport systems of Bifidobacterium longum NCC2705 J. Mol. Microbiol. Biotechnol. 2007, 12, 9-19
23. Sanchez, B.; Champomier-Verges, M. C.; Stuer-Lauridsen, B.; Ruas-Madiedo, P.; Anglade, P.; Baraige, F.; de los, R. C.; Johansen, E.; Zagorec, M.; Margolles, A. Adaptation and response of Bifidobacterium animalis subsp. lactis to bile: a proteomic and physiological approach Appl. Environ. Microbiol. 2007, 73, 6757-6767
24. Sanchez, B.; Champomier-Verges, M. C.; Anglade, P.; Baraige, F. de Los, R.C.; Margolles, A.; Zagorec, M. Proteomic analysis of global changes in protein expression during bile salt exposure of Bifidobacterium longum NCIMB 8809 J. Bacteriol. 2005, 187, 5799-5808
25. De Dea Lindner, J.; Canchaya, C.; Zhang, Z.; Neviani, E.; Fitzgerald, G. F.; van Sinderen, D.; Ventura, M. Exploiting Bifidobacterium genomes: The molecular basis of stress response Int. J. Food Microbiol. 2007, 120, 13-24
26. Nikaido, H. Molecular basis of bacterial outer membrane permeability revisited Microbiol. Mol. Biol. Rev. 2003, 67, 593-656
27. Otieno, D. O.; Ashton, J. F.; Shah, N. P. Evaluation of enzymic potential for biotransformation of isoflavone phytoestrogen in soymilk by Bifidobacterium animalis, Lactobacillus acidophilus and Lactobacillus casei Food Res. Int. 2006, 39, 394-407
28. Garro, M. S.; Aguirre, L.; Savoy De Giori, G. Biological activity of Bifidobacterium longum in response to environmental pH Appl. Microbiol. Biotechnol. 2006, 70, 612-617
29. Tsangalis, D.; Ashton, J. F.; Mcgill, A. E. J.; Shah, N. P. Enzymic transformation of isoflavone phytoestrogens in soymilk by β-glucosidase- producing bifidobacteria J. Food Sci. 2002, 67, 3104-3113
30. Bertram, R.; Schlicht, M.; Mahr, K.; Nothaft, H.; Saier, M. H., Jr.; Titgemeyer, F. In silico and transcriptional analysis of carbohydrate uptake systems of Streptomyces coelicolor A3(2) J. Bacteriol. 2004, 186, 1362-1373
31. Ehrmann, M.; Ehrle, R.; Hofmann, E.; Boos, W.; Schlösser, A. The ABC maltose transporter Mol. Microbiol. 1998, 29, 685-694
32. Postma, P. W.; Lengeler, J. W.; Jacobson, G. R. Phosphoenolpyruvate: Carbohydrate phosphotransferase systems of bacteria Microbiol. Rev. 1993, 57, 543-594
33. Barras, D. R.; Stone, B. A. β-1,3-glucan hydrolases from Euglena gracilis. II. Purification and properties of the β-1,3-glucan exo-hydrolas BBA-Enzymol. 1969, 191, 342-353
34. Gilad, O.; Jacobsen, S.; Stuer-Lauridsen, B.; Pedersen, M. B.; Garrigues, C.; Svensson, B. Combined transcriptome and proteome analysis of Bifidobacterium animalis subsp. lactis BB-12 grown on xylo-oligosaccharides and a model of their utilization Appl. Environ. Microbiol. 2010, 76, 7285-7291
35. Van Den Broek, L. A. M.; Hinz, S. W. A.; Beldman, G.; Vincken, J. P.; Voragen, A. G. J. Bifidobacterium carbohydrases-their role in breakdown and synthesis of (potential) prebiotics Mol. Nutr. Food Res. 2008, 52, 146-163
36. Palframan, R. J.; Gibson, G. R.; Rastall, R. A. Carbohydrate preferences of Bifidobacterium species isolated from the human gut Curr. Issues Intest. Microbiol. 2003, 4, 71-75