Expression Patterns of GmAP2/EREB-Like Transcription Factors Involved in Soybean Responses to Water Deficit

PLoS ONE

Volumn 8, Issue 5, 2013, Pages

  Marcolino Gomes, Juliana ^a,b   Rodrigues, Fabiana Aparecida ^b   Oliveira, Maria Cristina Neves ^b   Farias, Jose Renato Bouças ^b   Neumaier, Norman ^b   Abdelnoor, Ricardo Vilela ^b   Marcelino Guimarães, Francismar Corrêa ^b   Nepomuceno, Alexandre Lima ^b,c  

^a STATE UNIVERSITY OF LONDRINA   (Brazil)

^b EMBRAPA CERRADOS   (Brazil)

^c WESTERN REGIONAL RESEARCH CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CIRCADIAN RHYTHM; CONTROLLED STUDY; CULTIVAR; DEHYDRATION RESPONSIVE ELEMENT BINDING PROTEIN 1 GENE; DEHYDRATION RESPONSIVE ELEMENT BINDING PROTEIN 1F LIKE GENE; DEHYDRATION RESPONSIVE ELEMENT BINDING PROTEIN 3 GENE; DROUGHT RESPONSIVE ELEMENT BINDING PROTEIN 5 GENE; DROUGHT STRESS; E3 UBIQUITIN PROTEIN LIGASE DRIP2 LIKE GENE; ETHYLENE RESPONSIVE TRANSCRIPTION FACTOR 060 LIKE GENE; ETHYLENE RESPONSIVE TRANSCRIPTION FACTOR 105 LIKE GENE; GENE EXPRESSION PROFILING; GENE FUNCTION; GENE LOCATION; LOC100818907 GENE; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT GENE; PLANT LEAF; PLANT RESPONSE; PLANT ROOT; POLYMERASE CHAIN REACTION; RNA SEQUENCE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SOYBEAN; UPREGULATION;

AMINO ACID SEQUENCE; DROUGHTS; EVOLUTION, MOLECULAR; GENE EXPRESSION REGULATION, PLANT; GENOTYPE; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT PROTEINS; PROTEIN STRUCTURE, TERTIARY; SOYBEANS; TRANSCRIPTION FACTORS; WATER;

EID: 84877138690     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0062294     Document Type: Article

References (47)

1. Bates B, Kundzewicz ZW, Wu S, Palutikof JP (2008) Introduction to climate change and water. IPCC Secretariat, editor Geneva.
2. Melcher K, Ng L-M, Zhou XE, Soon F-F, Xu Y, et al. (2009) A gate-latch-lock mechanism for hormone signalling by abscisic acid receptors. Nature 462: 602-608.
3. Silva EN, Ferreira-Silva SL, Viégas RA, Silveira JAG, (2010) The role of organic and inorganic solutes in the osmotic adjustment of drought-stressed Jatropha curcas plants. Environmental and Experimental Botany 69: 279-285.
4. Almeida AM, Cardoso LA, Santos DM, Torné JM, Fevereiro PS, (2007) Trehalose and its applications in plant biotechnology. In Vitro Cellular & Developmental Biology- Plant 43: 167-177.
5. Uzilday B, Turkan I, Sekmen AH, Ozgur R, Karakaya HC, (2012) Comparison of ROS formation and antioxidant enzymes in Cleome gynandra and Cleome spinosa under drought stress. Plant science: an international journal of experimental plant biology 182: 59-70.
6. Shinozaki K, Yamaguchi-Shinozaki K, (2007) Gene networks involved in drought stress response and tolerance. Journal of experimental botany 58: 221-227.
7. Lin R, Zhao W, Meng X, Peng Y-L, (2007) Molecular cloning and characterization of a rice gene encoding AP2/EREBP-type transcription factor and its expression in response to infection with blast fungus and abiotic stresses. Physiological and Molecular Plant Pathology 70: 60-68.
8. Zhang G, Chen M, Li L, Xu Z, Chen X, et al. (2009) Overexpression of the soybean GmERF3 gene, an AP2/ERF type transcription factor for increased tolerances to salt, drought, and diseases in transgenic tobacco. Journal of experimental botany 60: 3781-3796.
9. Yamaguchi-Shinozaki K, Shinozaki K, (2005) Organization of cis-acting regulatory elements in osmotic- and cold-stress-responsive promoters. Trends in plant science 10: 88-94.
10. Liu Q, Kasuga M, Sakuma Y, Abe H, Miura S, et al. (1998) Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis. The Plant cell 10: 1391-1406.
11. Lee YP, Fleming AJ, Körner C, Meins F, (2009) Differential expression of the CBF pathway and cell cycle-related genes in Arabidopsis accessions in response to chronic low-temperature exposure. Plant biology (Stuttgart, Germany) 11: 273-283.
12. Chen M, Wang Q-Y, Cheng X-G, Xu Z-S, Li L-C, et al. (2007) GmDREB2, a soybean DRE-binding transcription factor, conferred drought and high-salt tolerance in transgenic plants. Biochemical and biophysical research communications 353: 299-305.
13. Sakuma Y, Maruyama K, Osakabe Y, Qin F, Seki M, et al. (2006) Functional analysis of an Arabidopsis transcription factor, DREB2A, involved in drought-responsive gene expression. Plant Cell 18: 1292-1309 doi:10.1105/tpc.105.035881.1.
14. Wang S, Yang S, Yin Y, Guo X, Wang S, et al. (2009) An in silico strategy identified the target gene candidates regulated by dehydration responsive element binding proteins (DREBs) in Arabidopsis genome. Plant molecular biology 69: 167-178.
15. Zhuang J, Peng R-H, Cheng Z-M, Zhang J, Cai B, et al. (2009) Genome-wide analysis of the putative AP2/ERF family genes in Vitis vinifera. Scientia Horticulturae 123: 73-81.
16. Nakano T, Suzuki K, Fujimura T, Shinshi H, (2006) Genome-Wide Analysis of the ERF Gene Family. Plant Physiology 140: 411-432.
17. Zhuang J, Cai B, Peng R-H, Zhu B, Jin X-F, et al. (2008) Genome-wide analysis of the AP2/ERF gene family in Populus trichocarpa. Biochemical and biophysical research communications 371: 468-474.
18. Zhang G, Chen M, Chen X, Xu Z, Guan S, et al. (2008) Phylogeny, gene structures, and expression patterns of the ERF gene family in soybean (Glycine max L.). Journal of experimental botany 59: 4095-4107.
19. Qin F, Sakuma Y, Li J, Liu Q, Li Y-Q, et al. (2004) Cloning and functional analysis of a novel DREB1/CBF transcription factor involved in cold-responsive gene expression in Zea mays L. Plant & cell physiology. 45: 1042-1052.
20. Almoguera C, Prieto-Dapena P, Díaz-Martín J, Espinosa JM, Carranco R, et al. (2009) The HaDREB2 transcription factor enhances basal thermotolerance and longevity of seeds through functional interaction with HaHSFA9. BMC plant biology 9: 75.
21. Qin F, Sakuma Y, Tran L-SP, Maruyama K, Kidokoro S, et al. (2008) Arabidopsis DREB2A-interacting proteins function as RING E3 ligases and negatively regulate plant drought stress-responsive gene expression. The Plant cell 20: 1693-1707.
22. Kidokoro S, Maruyama K, Nakashima K, Imura Y, Narusaka Y, et al. (2009) The phytochrome-interacting factor PIF7 negatively regulates DREB1 expression under circadian control in Arabidopsis. Plant physiology 151: 2046-2057.
23. Polizel AM, Medri ME, Nakashima K, Yamanaka N, Farias JRB, et al. (2011) Molecular, anatomical and physiological properties of a genetically modified soybean line transformed with rd29A:AtDREB1A for the improvement of drought tolerance. Genetics and molecular research: GMR 10: 3641-3656.
24. Rodrigues FA, Marcolino-Gomes J, Fátima Corrêa Carvalho J, do Nascimento LC, Neumaier N, et al. (2012) Subtractive libraries for prospecting differentially expressed genes in the soybean under water deficit. Genetics and molecular biology 35: 304-314.
25. Martins PK, Jordão BQ, Yamanaka N, Farias JRB, Beneventi MA, et al. (2008) Differential gene expression and mitotic cell analysis of the drought tolerant soybean (Glycine max L. Merrill Fabales, Fabaceae) cultivar MG/BR46 (Conquista) under two water deficit induction systems. Genetics and Molecular Biology 31: 512-521.
26. Nascimento LC, Costa GGL, Binneck E, Pereira GAG, Carazzolle MF, (2012) A web-based bioinformatics interface applied to the GENOSOJA Project: Databases and pipelines. Genetics and molecular biology 35: 203-211.
27. Fehr WR, Caviness CE, Burmood DT, Pennington JS, (1971) Stage of Development Descriptions for Soybeans, Glycine Max (L.) Merrill1. Crop Science 11: 929.
28. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular biology and evolution 28: 2731-2739.
29. Hu R, Fan C, Li H, Zhang Q, Fu Y-F, (2009) Evaluation of putative reference genes for gene expression normalization in soybean by quantitative real-time RT-PCR. BMC molecular biology 10: 93.
30. Jian B, Liu B, Bi Y, Hou W, Wu C, et al. (2008) Validation of internal control for gene expression study in soybean by quantitative real-time PCR. BMC molecular biology 9: 59.
31. Stolf-Moreira R, Lemos EG, De M, Abdelnoor RV, Beneventi MA, Rolla AAP, et al. (2011) Identification of reference genes for expression analysis by real-time quantitative PCR in drought-stressed soybean. Pesquisa agropecuaria brasileira 46: 58-65.
32. Oya T, Nepomuceno AL, Neumaier N, Renato J, Farias B, et al. (2004) Drought tolerance characteristics of brazilian soybean cultivars: evaluation and characterization of drought tolerance of various brazilian soybean cultivars in the field. Plant Production Science 7: 129-137.
33. Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, et al. (2002) Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome biology 3: RESEARCH0034.
34. Andersen CL, Jensen JL, Ørntoft TF, (2004) Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer research 64: 5245-5250.
35. Pfaffl MW, Horgan GW, Dempfle L, (2002) Relative expression software tool (REST) for group-wise comparison and statistical analysis of relative expression results in real-time PCR. Nucleic acids research 30: e36.
36. Krishnaswamy S, Verma S, Rahman MH, Kav NNV, (2011) Functional characterization of four APETALA2-family genes (RAP2.6, RAP2.6L, DREB19 and DREB26) in Arabidopsis. Plant molecular biology 75: 107-127.
37. Altschul SF, Gish W, Pennsylvania T, Park U, (1990) Basic Local Alignment Search Tool Department of Computer Science. Journal of molecular biology 215: 403-410.
38. Sakuma Y, Liu Q, Dubouzet JG, Abe H, Shinozaki K, et al. (2002) DNA-binding specificity of the ERF/AP2 domain of Arabidopsis DREBs, transcription factors involved in dehydration- and cold-inducible gene expression. Biochemical and biophysical research communications 290: 998-1009.
39. Oh S-J, Kim YS, Kwon C-W, Park HK, Jeong JS, et al. (2009) Overexpression of the Transcription Factor AP37 in Rice Improves Grain Yield under Drought Conditions. Plant Physiology 150: 1368-1379.
40. Chen M, Xu Z, Xia L, Li L, Cheng X, et al. (2009) Cold-induced modulation and functional analyses of the DRE-binding transcription factor gene, GmDREB3, in soybean (Glycine max L.). Journal of experimental botany 60: 121-135.
41. Kuriakose B, Arun V, Gnanamanickam SS, Thomas G, (2009) Tissue-specific expression in transgenic rice and Arabidopsis thaliana plants of GUS gene driven by the 5′ regulatory sequences of an anther specific rice gene YY2. Plant Science 177: 390-397.
42. Wang X, Dong J, Liu Y, Gao H, (2010) A novel dehydration-responsive element-binding protein from Caragana korshinskii is involved in the response to multiple abiotic stresses and enhances stress tolerance in transgenic tobacco. Plant Molecular Biology Reporter 28: 664-675.
43. Dong C-J, Liu J-Y, (2010) The Arabidopsis EAR-motif-containing protein RAP2.1 functions as an active transcriptional repressor to keep stress responses under tight control. BMC plant biology 10: 47.
44. Hand ML, Cogan NOI, Sawbridge TI, Spangenberg GC, Forster JW, (2010) Comparison of homoeolocus organisation in paired BAC clones from white clover (Trifolium repens L.) and microcolinearity with model legume species. BMC plant biology 10: 94.
45. Baerenfaller K, Massonnet C, Walsh S, Baginsky S, Bühlmann P, et al. (2012) Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit. Molecular systems biology 8: 606.
46. Jiang Y, Han YZ, Zhang XM, (2011) Expression profiles of a CONSTANS homologue GmCOL11 in Glycine max. Russian Journal of Plant Physiology 58: 928-935.
47. Hudson KA, (2010) The Circadian Clock-controlled Transcriptome of Developing Soybean Seeds. The Plant Genome Journal 3: 3.