-
1
-
-
77958085274
-
Describing the Mechanism of Antimicrobial Peptide Action with the Interfacial Activity Model
-
Wimley, W. C. Describing the Mechanism of Antimicrobial Peptide Action with the Interfacial Activity Model ACS Chem. Biol. 2010, 5, 905-917
-
(2010)
ACS Chem. Biol.
, vol.5
, pp. 905-917
-
-
Wimley, W.C.1
-
2
-
-
79955669580
-
Antimicrobial Peptides: Successes, Challenges and Unanswered Questions
-
Wimley, W. C.; Hristova, K. Antimicrobial Peptides: Successes, Challenges and Unanswered Questions J. Membr. Biol. 2011, 239, 27-34
-
(2011)
J. Membr. Biol.
, vol.239
, pp. 27-34
-
-
Wimley, W.C.1
Hristova, K.2
-
3
-
-
14544282377
-
Antimicrobial Peptides: Pore Formers or Metabolic Inhibitors in Bacteria?
-
Brogden, K. A. Antimicrobial Peptides: Pore Formers or Metabolic Inhibitors in Bacteria? Nat. Rev. Microbiol. 2005, 3, 238-250
-
(2005)
Nat. Rev. Microbiol.
, vol.3
, pp. 238-250
-
-
Brogden, K.A.1
-
4
-
-
33748950268
-
Molecular Mechanism of Antimicrobial Peptides: The Origin of Cooperativity
-
Huang, H. W. Molecular Mechanism of Antimicrobial Peptides: The Origin of Cooperativity Biochim. Biophys. Acta, Biomembr. 2006, 1758, 1292-1302
-
(2006)
Biochim. Biophys. Acta, Biomembr.
, vol.1758
, pp. 1292-1302
-
-
Huang, H.W.1
-
5
-
-
0029873933
-
Structure and Orientation of the Mammalian Antibacterial Peptide Cecropin P1 within Phospholipid Membranes
-
Gazit, E.; Miller, I. R.; Biggin, P. C.; Sansom, M. S. P.; Shai, Y. Structure and Orientation of the Mammalian Antibacterial Peptide Cecropin P1 within Phospholipid Membranes J. Mol. Biol. 1996, 258, 860-870
-
(1996)
J. Mol. Biol.
, vol.258
, pp. 860-870
-
-
Gazit, E.1
Miller, I.R.2
Biggin, P.C.3
Sansom, M.S.P.4
Shai, Y.5
-
6
-
-
69249142709
-
Mechanisms of Antimicrobial, Cytolytic, and Cell-Penetrating Peptides: From Kinetics to Thermodynamics
-
Almeida, P. F.; Pokorny, A. Mechanisms of Antimicrobial, Cytolytic, and Cell-Penetrating Peptides: From Kinetics to Thermodynamics Biochemistry 2009, 48, 8083-8093
-
(2009)
Biochemistry
, vol.48
, pp. 8083-8093
-
-
Almeida, P.F.1
Pokorny, A.2
-
7
-
-
3042818271
-
Kinetics of Dye Efflux and Lipid Flip-Flop Induced by Delta-Lysin in Phosphatidylcholine Vesicles and the Mechanism of Graded Release by Amphipathic, Alpha-Helical Peptides
-
Pokorny, A.; Almeida, P. F. F. Kinetics of Dye Efflux and Lipid Flip-Flop Induced by Delta-Lysin in Phosphatidylcholine Vesicles and the Mechanism of Graded Release by Amphipathic, Alpha-Helical Peptides Biochemistry 2004, 43, 8846-8857
-
(2004)
Biochemistry
, vol.43
, pp. 8846-8857
-
-
Pokorny, A.1
Almeida, P.F.F.2
-
8
-
-
77956761543
-
Kinetic Pathway of Antimicrobial Peptide Magainin 2-Induced Pore Formation in Lipid Membranes
-
Tamba, Y.; Ariyama, H.; Levadny, V.; Yamazaki, M. Kinetic Pathway of Antimicrobial Peptide Magainin 2-Induced Pore Formation in Lipid Membranes J. Phys. Chem. B 2010, 114, 12018-12026
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 12018-12026
-
-
Tamba, Y.1
Ariyama, H.2
Levadny, V.3
Yamazaki, M.4
-
9
-
-
70350238527
-
Membrane Poration by Antimicrobial Peptides Combining Atomistic and Coarse-Grained Descriptions
-
Rzepiela, A. J.; Sengupta, D.; Goga, N.; Marrink, S. J. Membrane Poration by Antimicrobial Peptides Combining Atomistic and Coarse-Grained Descriptions Faraday Discuss. 2010, 144, 431-443
-
(2010)
Faraday Discuss.
, vol.144
, pp. 431-443
-
-
Rzepiela, A.J.1
Sengupta, D.2
Goga, N.3
Marrink, S.J.4
-
10
-
-
74949104869
-
Cause and Effect of Melittin-Induced Pore Formation: A Computational Approach
-
Manna, M.; Mukhopadhyay, C. Cause and Effect of Melittin-Induced Pore Formation: A Computational Approach Langmuir 2009, 25, 12235-12242
-
(2009)
Langmuir
, vol.25
, pp. 12235-12242
-
-
Manna, M.1
Mukhopadhyay, C.2
-
11
-
-
77953724763
-
Antimicrobial Peptides in Toroidal and Cylindrical Pores
-
Mihajlovic, M.; Lazaridis, T. Antimicrobial Peptides in Toroidal and Cylindrical Pores Biochim. Biophys. Acta, Biomembr. 2010, 1798, 1485-1493
-
(2010)
Biochim. Biophys. Acta, Biomembr.
, vol.1798
, pp. 1485-1493
-
-
Mihajlovic, M.1
Lazaridis, T.2
-
12
-
-
79959997001
-
Influence of the Arrangement and Secondary Structure of Melittin Peptides on the Formation and Stability of Toroidal Pores
-
Irudayam, S. J.; Berkowitz, M. L. Influence of the Arrangement and Secondary Structure of Melittin Peptides on the Formation and Stability of Toroidal Pores Biochim. Biophys. Acta, Biomembr 2011, 1808, 2258-2266
-
(2011)
Biochim. Biophys. Acta, Biomembr
, vol.1808
, pp. 2258-2266
-
-
Irudayam, S.J.1
Berkowitz, M.L.2
-
13
-
-
84858027055
-
Difference between Magainin-2 and Melittin Assemblies in Phosphatidylcholine Bilayers: Results from Coarse-Grained Simulations
-
Santo, K. P.; Berkowitz, M. L. Difference between Magainin-2 and Melittin Assemblies in Phosphatidylcholine Bilayers: Results from Coarse-Grained Simulations J. Phys. Chem. B 2012, 116, 3021-3030
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 3021-3030
-
-
Santo, K.P.1
Berkowitz, M.L.2
-
14
-
-
77955503561
-
Polarizable Water Model for the Coarse-Grained Martini Force Field
-
Yesylevskyy, S. O.; Schafer, L. V.; Sengupta, D.; Marrink, S. J. Polarizable Water Model for the Coarse-Grained Martini Force Field PLoS Comput. Biol. 2010, 6, e1000810
-
(2010)
PLoS Comput. Biol.
, vol.6
, pp. 1000810
-
-
Yesylevskyy, S.O.1
Schafer, L.V.2
Sengupta, D.3
Marrink, S.J.4
-
15
-
-
80052804796
-
Water Defect and Pore Formation in Atomistic and Coarse-Grained Lipid Membranes: Pushing the Limits of Coarse Graining
-
Bennett, W. F. D.; Tieleman, D. P. Water Defect and Pore Formation in Atomistic and Coarse-Grained Lipid Membranes: Pushing the Limits of Coarse Graining J. Chem. Theory Comput. 2011, 7, 2981-2988
-
(2011)
J. Chem. Theory Comput.
, vol.7
, pp. 2981-2988
-
-
Bennett, W.F.D.1
Tieleman, D.P.2
-
16
-
-
84855853473
-
Investigation of Model Membrane Disruption Mechanism by Melittin Using Pulse Electron Paramagnetic Resonance Spectroscopy and Cryogenic Transmission Electron Microscopy
-
Gordon-Grossman, M.; Zimmermann, H.; Wolf, S. G.; Shai, Y.; Goldfarb, D. Investigation of Model Membrane Disruption Mechanism by Melittin Using Pulse Electron Paramagnetic Resonance Spectroscopy and Cryogenic Transmission Electron Microscopy J. Phys. Chem. B 2012, 116, 179-188
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 179-188
-
-
Gordon-Grossman, M.1
Zimmermann, H.2
Wolf, S.G.3
Shai, Y.4
Goldfarb, D.5
-
17
-
-
79959572024
-
Spontaneous Buckling of Lipid Bilayer and Vesicle Budding Induced by Antimicrobial Peptide Magainin 2: A Coarse-Grained Simulation Study
-
Woo, H. J.; Wallqvist, A. Spontaneous Buckling of Lipid Bilayer and Vesicle Budding Induced by Antimicrobial Peptide Magainin 2: A Coarse-Grained Simulation Study J. Phys. Chem. B 2011, 115, 8122-8129
-
(2011)
J. Phys. Chem. B
, vol.115
, pp. 8122-8129
-
-
Woo, H.J.1
Wallqvist, A.2
-
18
-
-
0020479083
-
The Structure of Melittin 0.1. Structure Determination and Partial Refinement
-
Terwilliger, T. C.; Eisenberg, D. The Structure of Melittin 0.1. Structure Determination and Partial Refinement J. Biol. Chem. 1982, 257, 6010-6015
-
(1982)
J. Biol. Chem.
, vol.257
, pp. 6010-6015
-
-
Terwilliger, T.C.1
Eisenberg, D.2
-
19
-
-
0020479123
-
The Structure of Melittin 0.2. Interpretation of the Structure
-
Terwilliger, T. C.; Eisenberg, D. The Structure of Melittin 0.2. Interpretation of the Structure J. Biol. Chem. 1982, 257, 6016-6022
-
(1982)
J. Biol. Chem.
, vol.257
, pp. 6016-6022
-
-
Terwilliger, T.C.1
Eisenberg, D.2
-
20
-
-
1642485164
-
Coarse Grained Model for Semiquantitative Lipid Simulations
-
Marrink, S. J.; de Vries, A. H.; Mark, A. E. Coarse Grained Model for Semiquantitative Lipid Simulations J. Phys. Chem. B 2004, 108, 750-760
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 750-760
-
-
Marrink, S.J.1
De Vries, A.H.2
Mark, A.E.3
-
21
-
-
34547474332
-
The Martini Force Field: Coarse Grained Model for Biomolecular Simulations
-
Marrink, S. J.; Risselada, H. J.; Yefimov, S.; Tieleman, D. P.; de Vries, A. H. The Martini Force Field: Coarse Grained Model for Biomolecular Simulations J. Phys. Chem. B 2007, 111, 7812-7824
-
(2007)
J. Phys. Chem. B
, vol.111
, pp. 7812-7824
-
-
Marrink, S.J.1
Risselada, H.J.2
Yefimov, S.3
Tieleman, D.P.4
De Vries, A.H.5
-
22
-
-
49449113010
-
The Martini Coarse-Grained Force Field: Extension to Proteins
-
Monticelli, L.; Kandasamy, S. K.; Periole, X.; Larson, R. G.; Tieleman, D. P.; Marrink, S. J. The Martini Coarse-Grained Force Field: Extension to Proteins J. Chem. Theory Comput. 2008, 4, 819-834
-
(2008)
J. Chem. Theory Comput.
, vol.4
, pp. 819-834
-
-
Monticelli, L.1
Kandasamy, S.K.2
Periole, X.3
Larson, R.G.4
Tieleman, D.P.5
Marrink, S.J.6
-
23
-
-
84865318587
-
Binding and Reorientation of Melittin in a Popc Bilayer: Computer Simulations
-
Irudayam, S. J.; Berkowitz, M. L. Binding and Reorientation of Melittin in a Popc Bilayer: Computer Simulations Biochim. Biophys. Acta, Biomembr. 2012, 1818, 2975-2981
-
(2012)
Biochim. Biophys. Acta, Biomembr.
, vol.1818
, pp. 2975-2981
-
-
Irudayam, S.J.1
Berkowitz, M.L.2
-
24
-
-
11244272784
-
Dissection of Antibacterial and Toxic Activity of Melittin-A Leucine Zipper Motif Plays a Crucial Role in Determining Its Hemolytic Activity but Not Antibacterial Activity
-
Asthana, N.; Yadav, S. P.; Ghosh, J. K. Dissection of Antibacterial and Toxic Activity of Melittin-a Leucine Zipper Motif Plays a Crucial Role in Determining Its Hemolytic Activity but Not Antibacterial Activity J. Biol. Chem. 2004, 279, 55042-55050
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 55042-55050
-
-
Asthana, N.1
Yadav, S.P.2
Ghosh, J.K.3
-
25
-
-
34447282684
-
Melittin: A Membrane-Active Peptide with Diverse Functions
-
Raghuraman, H.; Chattopadhyay, A. Melittin: A Membrane-Active Peptide with Diverse Functions Biosci. Rep. 2007, 27, 189-223
-
(2007)
Biosci. Rep.
, vol.27
, pp. 189-223
-
-
Raghuraman, H.1
Chattopadhyay, A.2
-
26
-
-
33645961739
-
A Smooth Particle Mesh Ewald Method
-
Essmann, U.; Perera, L.; Berkowitz, M. L.; Darden, T.; Lee, H.; Pedersen, L. G. A Smooth Particle Mesh Ewald Method J. Chem. Phys. 1995, 103, 8577-8593
-
(1995)
J. Chem. Phys.
, vol.103
, pp. 8577-8593
-
-
Essmann, U.1
Perera, L.2
Berkowitz, M.L.3
Darden, T.4
Lee, H.5
Pedersen, L.G.6
-
27
-
-
33846823909
-
Particle Mesh Ewald-an N.Log(N) Method for Ewald Sums in Large Systems
-
Darden, T.; York, D.; Pedersen, L. Particle Mesh Ewald-an N.Log(N) Method for Ewald Sums in Large Systems J. Chem. Phys. 1993, 98, 10089-10092
-
(1993)
J. Chem. Phys.
, vol.98
, pp. 10089-10092
-
-
Darden, T.1
York, D.2
Pedersen, L.3
-
28
-
-
33750587438
-
Molecular-Dynamics with Coupling to an External Bath
-
Berendsen, H. J. C.; Postma, J. P. M.; Vangunsteren, W. F.; Dinola, A.; Haak, J. R. Molecular-Dynamics with Coupling to an External Bath J. Chem. Phys. 1984, 81, 3684-3690
-
(1984)
J. Chem. Phys.
, vol.81
, pp. 3684-3690
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Vangunsteren, W.F.3
Dinola, A.4
Haak, J.R.5
-
29
-
-
0029878720
-
Vmd: Visual Molecular Dynamics
-
Humphrey, W.; Dalke, A.; Schulten, K. Vmd: Visual Molecular Dynamics J. Mol. Graphics Modell. 1996, 14, 33-38
-
(1996)
J. Mol. Graphics Modell.
, vol.14
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
30
-
-
77950584902
-
Reconstruction of Atomistic Details from Coarse-Grained Structures
-
Rzepiela, A. J.; Schafer, L. V.; Goga, N.; Risselada, H. J.; De Vries, A. H.; Marrink, S. J. Reconstruction of Atomistic Details from Coarse-Grained Structures J. Comput. Chem. 2010, 31, 1333-1343
-
(2010)
J. Comput. Chem.
, vol.31
, pp. 1333-1343
-
-
Rzepiela, A.J.1
Schafer, L.V.2
Goga, N.3
Risselada, H.J.4
De Vries, A.H.5
Marrink, S.J.6
-
31
-
-
65249151900
-
Lipid Models for United-Atom Molecular Dynamics Simulations of Proteins
-
Kukol, A. Lipid Models for United-Atom Molecular Dynamics Simulations of Proteins J. Chem. Theory Comput. 2009, 5, 615-626
-
(2009)
J. Chem. Theory Comput.
, vol.5
, pp. 615-626
-
-
Kukol, A.1
-
32
-
-
4444282928
-
A Biomolecular Force Field Based on the Free Enthalpy of Hydration and Solvation: The Gromos Force-Field Parameter Sets 53a5 and 53a6
-
Oostenbrink, C.; Villa, A.; Mark, A. E.; Van Gunsteren, W. F. A Biomolecular Force Field Based on the Free Enthalpy of Hydration and Solvation: The Gromos Force-Field Parameter Sets 53a5 and 53a6 J. Comput. Chem. 2004, 25, 1656-1676
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1656-1676
-
-
Oostenbrink, C.1
Villa, A.2
Mark, A.E.3
Van Gunsteren, W.F.4
-
33
-
-
0000388705
-
Lincs: A Linear Constraint Solver for Molecular Simulations
-
Hess, B.; Bekker, H.; Berendsen, H. J. C.; Fraaije, J. G. E. M. Lincs: A Linear Constraint Solver for Molecular Simulations J. Comput. Chem. 1997, 18, 1463-1472
-
(1997)
J. Comput. Chem.
, vol.18
, pp. 1463-1472
-
-
Hess, B.1
Bekker, H.2
Berendsen, H.J.C.3
Fraaije, J.G.E.M.4
-
34
-
-
52049109183
-
Toroidal Pores Formed by Antimicrobial Peptides Show Significant Disorder
-
Sengupta, D.; Leontiadou, H.; Mark, A. E.; Marrink, S. J. Toroidal Pores Formed by Antimicrobial Peptides Show Significant Disorder Biochim. Biophys. Acta, Biomembr. 2008, 1778, 2308-2317
-
(2008)
Biochim. Biophys. Acta, Biomembr.
, vol.1778
, pp. 2308-2317
-
-
Sengupta, D.1
Leontiadou, H.2
Mark, A.E.3
Marrink, S.J.4
-
35
-
-
0030790179
-
Pore Formation and Translocation of Melittin
-
Matsuzaki, K.; Yoneyama, S.; Miyajima, K. Pore Formation and Translocation of Melittin Biophys. J. 1997, 73, 831-838
-
(1997)
Biophys. J.
, vol.73
, pp. 831-838
-
-
Matsuzaki, K.1
Yoneyama, S.2
Miyajima, K.3
-
36
-
-
70349298715
-
A Combined Pulse Epr and Monte Carlo Simulation Study Provides Molecular Insight on Peptide-Membrane Interactions
-
Gordon-Grossman, M.; Gofman, Y.; Zimmermann, H.; Frydman, V.; Shai, Y.; Ben-Tal, N.; Goldfarb, D. A Combined Pulse Epr and Monte Carlo Simulation Study Provides Molecular Insight on Peptide-Membrane Interactions J. Phys. Chem. B 2009, 113, 12687-12695
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 12687-12695
-
-
Gordon-Grossman, M.1
Gofman, Y.2
Zimmermann, H.3
Frydman, V.4
Shai, Y.5
Ben-Tal, N.6
Goldfarb, D.7
-
37
-
-
77958463973
-
Antimicrobial Peptides Induce Growth of Phosphatidylglycerol Domains in a Model Bacterial Membrane
-
Polyansky, A. A.; Ramaswamy, R.; Volynsky, P. E.; Sbalzarini, I. F.; Marrink, S. J.; Efremov, R. G. Antimicrobial Peptides Induce Growth of Phosphatidylglycerol Domains in a Model Bacterial Membrane J. Phys. Chem. Lett. 2010, 1, 3108-3111
-
(2010)
J. Phys. Chem. Lett.
, vol.1
, pp. 3108-3111
-
-
Polyansky, A.A.1
Ramaswamy, R.2
Volynsky, P.E.3
Sbalzarini, I.F.4
Marrink, S.J.5
Efremov, R.G.6
-
38
-
-
56049100497
-
Coarse-Grained Simulations of the Membrane-Active Antimicrobial Peptide Maculatin 1.1
-
Bond, P. J.; Parton, D. L.; Clark, J. F.; Sansom, M. S. P. Coarse-Grained Simulations of the Membrane-Active Antimicrobial Peptide Maculatin 1.1 Biophys. J. 2008, 95, 3802-3815
-
(2008)
Biophys. J.
, vol.95
, pp. 3802-3815
-
-
Bond, P.J.1
Parton, D.L.2
Clark, J.F.3
Sansom, M.S.P.4
-
39
-
-
84864227931
-
Multiscale Simulations of the Antimicrobial Peptide Maculatin 1.1: Water Permeation through Disordered Aggregates
-
Parton, D. L.; Akhmatskaya, E. V.; Sansom, M. S. P. Multiscale Simulations of the Antimicrobial Peptide Maculatin 1.1: Water Permeation through Disordered Aggregates J. Phys. Chem. B 2012, 116, 8485-8493
-
(2012)
J. Phys. Chem. B
, vol.116
, pp. 8485-8493
-
-
Parton, D.L.1
Akhmatskaya, E.V.2
Sansom, M.S.P.3
-
40
-
-
0028178521
-
Pore-Forming Peptides Induce Rapid Phospholipid Flip-Flop in Membranes
-
Fattal, E.; Nir, S.; Parente, R. A.; Szoka, F. C. Pore-Forming Peptides Induce Rapid Phospholipid Flip-Flop in Membranes Biochemistry 1994, 33, 6721-6731
-
(1994)
Biochemistry
, vol.33
, pp. 6721-6731
-
-
Fattal, E.1
Nir, S.2
Parente, R.A.3
Szoka, F.C.4
-
41
-
-
0035144532
-
Structure, Location, and Lipid Perturbations of Melittin at the Membrane Interface
-
Hristova, K.; Dempsey, C. E.; White, S. H. Structure, Location, and Lipid Perturbations of Melittin at the Membrane Interface Biophys. J. 2001, 80, 801-811
-
(2001)
Biophys. J.
, vol.80
, pp. 801-811
-
-
Hristova, K.1
Dempsey, C.E.2
White, S.H.3
-
42
-
-
0037961563
-
Msi-78, an Analogue of the Magainin Antimicrobial Peptides, Disrupts Lipid Bilayer Structure Via Positive Curvature Strain
-
Hallock, K. J.; Lee, D. K.; Ramamoorthy, A. Msi-78, an Analogue of the Magainin Antimicrobial Peptides, Disrupts Lipid Bilayer Structure Via Positive Curvature Strain Biophys. J. 2003, 84, 3052-3060
-
(2003)
Biophys. J.
, vol.84
, pp. 3052-3060
-
-
Hallock, K.J.1
Lee, D.K.2
Ramamoorthy, A.3
-
43
-
-
70350783743
-
Amphipathic Motifs in Bar Domains Are Essential for Membrane Curvature Sensing
-
Bhatia, V. K.; Madsen, K. L.; Bolinger, P. Y.; Kunding, A.; Hedegard, P.; Gether, U.; Stamou, D. Amphipathic Motifs in Bar Domains Are Essential for Membrane Curvature Sensing EMBO J. 2009, 28, 3303-3314
-
(2009)
EMBO J.
, vol.28
, pp. 3303-3314
-
-
Bhatia, V.K.1
Madsen, K.L.2
Bolinger, P.Y.3
Kunding, A.4
Hedegard, P.5
Gether, U.6
Stamou, D.7
-
44
-
-
79953862815
-
Mechanism of Membrane Curvature Sensing by Amphipathic Helix Containing Proteins
-
Cui, H. S.; Lyman, E.; Voth, G. A. Mechanism of Membrane Curvature Sensing by Amphipathic Helix Containing Proteins Biophys. J. 2011, 100, 1271-1279
-
(2011)
Biophys. J.
, vol.100
, pp. 1271-1279
-
-
Cui, H.S.1
Lyman, E.2
Voth, G.A.3
|