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Volumn 8, Issue 4, 2013, Pages

Phylogenetic and Phylodynamic Analyses of Human Metapneumovirus in Buenos Aires (Argentina) for a Three-Year Period (2009-2011)

Author keywords

[No Author keywords available]

Indexed keywords

GUANINE NUCLEOTIDE BINDING PROTEIN; PROTEIN F; UNCLASSIFIED DRUG; VIRUS PROTEIN;

EID: 84876961251     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0063070     Document Type: Article
Times cited : (14)

References (40)
  • 1
    • 0034953901 scopus 로고    scopus 로고
    • A newly discovered human pneumovirus isolated from young children with respiratory tract disease
    • van den Hoogen BG, de Jong JC, Groen J, Kuiken T, de Groot R, et al. (2001) A newly discovered human pneumovirus isolated from young children with respiratory tract disease. Nat Med 7: 719-724.
    • (2001) Nat Med , vol.7 , pp. 719-724
    • van den Hoogen, B.G.1    de Jong, J.C.2    Groen, J.3    Kuiken, T.4    de Groot, R.5
  • 3
    • 0023621989 scopus 로고
    • Preparation and characterization of monoclonal antibodies directed against five structural components of human respiratory syncytial virus subgroup B
    • Orvell C, Norrby E, Mufson MA, (1987) Preparation and characterization of monoclonal antibodies directed against five structural components of human respiratory syncytial virus subgroup B. J Gen Virol. 68: 3125-3135.
    • (1987) J Gen Virol , vol.68 , pp. 3125-3135
    • Orvell, C.1    Norrby, E.2    Mufson, M.A.3
  • 4
    • 51749097360 scopus 로고    scopus 로고
    • Human metapneumovirus reinfection among children in Thailand determined by ELISA using purified soluble fusion protein
    • Pavlin JA, Hickey AC, Ulbrandt N, Chan Y-P, Endy TP, et al. (2008) Human metapneumovirus reinfection among children in Thailand determined by ELISA using purified soluble fusion protein. J Infect Dis 198: 836-842.
    • (2008) J Infect Dis , vol.198 , pp. 836-842
    • Pavlin, J.A.1    Hickey, A.C.2    Ulbrandt, N.3    Chan, Y.-P.4    Endy, T.P.5
  • 5
    • 3242659845 scopus 로고    scopus 로고
    • Recovery of human metapneumovirus genetic lineages A and B from cloned cDNA
    • Herfst S, de Graaf M, Schickli JH, Tang RS, Kaur J, et al. (2004) Recovery of human metapneumovirus genetic lineages A and B from cloned cDNA. J Virol 78: 8264-8270.
    • (2004) J Virol , vol.78 , pp. 8264-8270
    • Herfst, S.1    de Graaf, M.2    Schickli, J.H.3    Tang, R.S.4    Kaur, J.5
  • 7
    • 84859133267 scopus 로고    scopus 로고
    • Evolutionary dynamics analysis of human metapneumovirus subtype A2: genetic evidence for its dominant epidemic
    • Li J, Ren L, Guo L, Xiang Z, Paranhos-Baccalà G, et al. (2012) Evolutionary dynamics analysis of human metapneumovirus subtype A2: genetic evidence for its dominant epidemic. PLoS ONE 7: e34544.
    • (2012) PLoS ONE , vol.7
    • Li, J.1    Ren, L.2    Guo, L.3    Xiang, Z.4    Paranhos-Baccalà, G.5
  • 12
    • 79957487836 scopus 로고    scopus 로고
    • Application of TaqMan low-density arrays for simultaneous detection of multiple respiratory pathogens
    • Kodani M, Yang G, Conklin LM, Travis TC, Whitney CG, et al. (2011) Application of TaqMan low-density arrays for simultaneous detection of multiple respiratory pathogens. J Clin Microbiol 49: 2175-2182.
    • (2011) J Clin Microbiol , vol.49 , pp. 2175-2182
    • Kodani, M.1    Yang, G.2    Conklin, L.M.3    Travis, T.C.4    Whitney, C.G.5
  • 14
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA, (1999) BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41: 95-98.
    • (1999) Nucleic Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 15
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ, (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 16
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5
  • 17
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond AJ, Rambaut A, (2007) BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol 7: 214.
    • (2007) BMC Evol Biol , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 18
    • 80053959139 scopus 로고    scopus 로고
    • SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics
    • Bielejec F, Rambaut A, Suchard MA, Lemey P, (2011) SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics. Bioinformatics 27: 2910-2912.
    • (2011) Bioinformatics , vol.27 , pp. 2910-2912
    • Bielejec, F.1    Rambaut, A.2    Suchard, M.A.3    Lemey, P.4
  • 19
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
    • Librado P, Rozas J, (2009) DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 20
    • 77957233168 scopus 로고    scopus 로고
    • Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology
    • Delport W, Poon AF, Frost SD, Kosakovsky Pond SL, (2010) Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology. Bioinformatics 26: 2455-2457.
    • (2010) Bioinformatics , vol.26 , pp. 2455-2457
    • Delport, W.1    Poon, A.F.2    Frost, S.D.3    Kosakovsky Pond, S.L.4
  • 21
    • 17744396121 scopus 로고    scopus 로고
    • Not so different after all: a comparison of methods for detecting amino acid sites under selection
    • Kosakovsky Pond SL, Frost SD, (2005) Not so different after all: a comparison of methods for detecting amino acid sites under selection. Mol Biol Evol 22: 1208-1222.
    • (2005) Mol Biol Evol , vol.22 , pp. 1208-1222
    • Kosakovsky Pond, S.L.1    Frost, S.D.2
  • 22
    • 9744280420 scopus 로고    scopus 로고
    • Tracking global patterns of N-linked glycosylation site variation in highly variable viral glycoproteins: HIV, SIV, and HCV envelopes and influenza hemagglutinin
    • Zhang M, Gaschen B, Blay W, Foley B, Haigwood N, et al. (2004) Tracking global patterns of N-linked glycosylation site variation in highly variable viral glycoproteins: HIV, SIV, and HCV envelopes and influenza hemagglutinin. Glycobiology 14: 1229-1246.
    • (2004) Glycobiology , vol.14 , pp. 1229-1246
    • Zhang, M.1    Gaschen, B.2    Blay, W.3    Foley, B.4    Haigwood, N.5
  • 23
    • 13644257223 scopus 로고    scopus 로고
    • Prediction, conservation analysis, and structural characterization of mammalian mucin-type O-glycosylation sites
    • Julenius K, Mølgaard A, Gupta R, Brunak S, (2005) Prediction, conservation analysis, and structural characterization of mammalian mucin-type O-glycosylation sites. Glycobiology15: 153-164.
    • (2005) Glycobiology , vol.15 , pp. 153-164
    • Julenius, K.1    Mølgaard, A.2    Gupta, R.3    Brunak, S.4
  • 24
    • 54749148319 scopus 로고    scopus 로고
    • On evaluating MHC-II binding peptide prediction methods
    • El-Manzalawy Y, Dobbs D, Honavar V, (2008) On evaluating MHC-II binding peptide prediction methods. PLoS ONE 3: e3268.
    • (2008) PLoS ONE , vol.3
    • El-Manzalawy, Y.1    Dobbs, D.2    Honavar, V.3
  • 25
    • 58149401441 scopus 로고    scopus 로고
    • Identification of antibody neutralization epitopes on the fusion protein of human metapneumovirus
    • Ulbrandt ND, Ji H, Patel NK, Barnes AS, Wilson S, et al. (2008) Identification of antibody neutralization epitopes on the fusion protein of human metapneumovirus. J Gen Virol 89: 3113-3118.
    • (2008) J Gen Virol , vol.89 , pp. 3113-3118
    • Ulbrandt, N.D.1    Ji, H.2    Patel, N.K.3    Barnes, A.S.4    Wilson, S.5
  • 26
    • 33646902378 scopus 로고    scopus 로고
    • The impact of infection with human metapneumovirus and other respiratory viruses in young infants and children at high risk for severe pulmonary disease
    • Klein MI, Coviello S, Bauer G, Benitez A, Serra ME, et al. (2006) The impact of infection with human metapneumovirus and other respiratory viruses in young infants and children at high risk for severe pulmonary disease. J Infect Dis193: 1544-1551.
    • (2006) J Infect Dis , vol.193 , pp. 1544-1551
    • Klein, M.I.1    Coviello, S.2    Bauer, G.3    Benitez, A.4    Serra, M.E.5
  • 27
    • 84873174648 scopus 로고    scopus 로고
    • Seasonal distribution and epidemiological characteristics of human metapneumovirus infections in pediatric inpatients in Southeast China
    • Wang Y, Chen Z, Yan YD, Guo H, Chu C, et al. (2013) Seasonal distribution and epidemiological characteristics of human metapneumovirus infections in pediatric inpatients in Southeast China. Arch Virol 158: 417-424.
    • (2013) Arch Virol , vol.158 , pp. 417-424
    • Wang, Y.1    Chen, Z.2    Yan, Y.D.3    Guo, H.4    Chu, C.5
  • 28
    • 84880509104 scopus 로고    scopus 로고
    • Evaluation of viral co-infections in hospitalized and non-hospitalized children with respiratory infections using microarrays
    • doi: 10.1111/1469-0691.12015. [Epub ahead of print]
    • Kouni S, Karakitsos P, Chranioti A, Theodoridou M, Chrousos G, et al. (2012) Evaluation of viral co-infections in hospitalized and non-hospitalized children with respiratory infections using microarrays. Clin Microbiol Infect. doi: 10.1111/1469-0691.12015. [Epub ahead of print].
    • (2012) Clin Microbiol Infect
    • Kouni, S.1    Karakitsos, P.2    Chranioti, A.3    Theodoridou, M.4    Chrousos, G.5
  • 29
    • 84873190285 scopus 로고    scopus 로고
    • Severe metapneumovirus infections among immunocompetent and immunocompromised patients admitted to hospital with respiratory infection
    • Souza JS, Watanabe A, Carraro E, Granato C, Bellei N, (2013) Severe metapneumovirus infections among immunocompetent and immunocompromised patients admitted to hospital with respiratory infection. J Med Virol 85: 530-536.
    • (2013) J Med Virol , vol.85 , pp. 530-536
    • Souza, J.S.1    Watanabe, A.2    Carraro, E.3    Granato, C.4    Bellei, N.5
  • 31
    • 31044445695 scopus 로고    scopus 로고
    • Genetic variability of human metapneumovirus infection: evidence of a shift in viral genotype without a change in illness
    • Agapov E, Sumino KC, Gaudreault-Keener M, Storch GA, Holtzman MJ, (2006) Genetic variability of human metapneumovirus infection: evidence of a shift in viral genotype without a change in illness. J Infect Dis 193: 396-403.
    • (2006) J Infect Dis , vol.193 , pp. 396-403
    • Agapov, E.1    Sumino, K.C.2    Gaudreault-Keener, M.3    Storch, G.A.4    Holtzman, M.J.5
  • 32
    • 33645939235 scopus 로고    scopus 로고
    • Genetic heterogeneity of G and F protein genes from Argentinean human metapneumovirus strains
    • Galiano M, Trento A, Ver L, Carballal G, Videla C, (2006) Genetic heterogeneity of G and F protein genes from Argentinean human metapneumovirus strains. J Med Virol 78: 631-637.
    • (2006) J Med Virol , vol.78 , pp. 631-637
    • Galiano, M.1    Trento, A.2    Ver, L.3    Carballal, G.4    Videla, C.5
  • 35
    • 80053500257 scopus 로고    scopus 로고
    • Genetic variability of human metapneumovirus amongst an all ages population in Cambodia between 2007 and 2009
    • Feb 1. [Epub ahead of print]
    • Arnott A, Vong S, Sek M, Naughtin M, Beauté J, et al. (2011) Genetic variability of human metapneumovirus amongst an all ages population in Cambodia between 2007 and 2009. Infect Genet Evol Feb 1. [Epub ahead of print].
    • (2011) Infect Genet Evol
    • Arnott, A.1    Vong, S.2    Sek, M.3    Naughtin, M.4    Beauté, J.5
  • 36
    • 33748651009 scopus 로고    scopus 로고
    • Differences in clinical severity between genotype A and genotype B human metapneumovirus infection in children
    • Vicente D, Montes M, Cilla G, Perez-Yarza EG, Perez-Trallero E, (2006) Differences in clinical severity between genotype A and genotype B human metapneumovirus infection in children. Clin Infect Dis 42: e111-113.
    • (2006) Clin Infect Dis , vol.42
    • Vicente, D.1    Montes, M.2    Cilla, G.3    Perez-Yarza, E.G.4    Perez-Trallero, E.5
  • 37
    • 70349196002 scopus 로고    scopus 로고
    • RNA virus genomics: a world of possibilities
    • Holmes EC, (2009) RNA virus genomics: a world of possibilities. J Clin Invest 119: 2488-2495.
    • (2009) J Clin Invest , vol.119 , pp. 2488-2495
    • Holmes, E.C.1
  • 38
    • 53849133821 scopus 로고    scopus 로고
    • Evolutionary history and phylogeography of human viruses
    • Holmes EC, (2008) Evolutionary history and phylogeography of human viruses. Annu Rev Microbiol 62: 307-328.
    • (2008) Annu Rev Microbiol , vol.62 , pp. 307-328
    • Holmes, E.C.1
  • 39
    • 84861382309 scopus 로고    scopus 로고
    • Phylogeography and population dynamics of dengue viruses in the Americas
    • Allicock OM, Lemey P, Tatem AJ, Pybus OG, Bennett SN, et al. (2012) Phylogeography and population dynamics of dengue viruses in the Americas. Mol Biol Evol 29: 1533-1543.
    • (2012) Mol Biol Evol , vol.29 , pp. 1533-1543
    • Allicock, O.M.1    Lemey, P.2    Tatem, A.J.3    Pybus, O.G.4    Bennett, S.N.5
  • 40
    • 33746798064 scopus 로고    scopus 로고
    • Isolation and characterization of monoclonal antibodies which neutralize human metapneumovirus in vitro and in vivo
    • Ulbrandt ND, Ji H, Patel NK, Riggs JM, Brewah YA, et al. (2006) Isolation and characterization of monoclonal antibodies which neutralize human metapneumovirus in vitro and in vivo. J Virol 80: 7799-7806.
    • (2006) J Virol , vol.80 , pp. 7799-7806
    • Ulbrandt, N.D.1    Ji, H.2    Patel, N.K.3    Riggs, J.M.4    Brewah, Y.A.5


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