메뉴 건너뛰기




Volumn 27, Issue 8, 2013, Pages 928-940

Structure-function studies of STAR family quaking proteins bound to their in vivo RNA target sites

Author keywords

GLD 1; mRNA; Myelination; PAR CLIP; QKI; X ray crystallography

Indexed keywords

CAENORHABDITIS ELEGANS PROTEIN; GLD 1 PROTEIN; HOMODIMER; MESSENGER RNA; QUAKING PROTEIN; RNA; RNA BINDING PROTEIN; SCAFFOLD PROTEIN; SIGNAL TRANSDUCTION AND ACTIVATION OF RNA DOMAIN PROTEIN; SUGAR PHOSPHATE; UNCLASSIFIED DRUG;

EID: 84876927499     PISSN: 08909369     EISSN: 15495477     Source Type: Journal    
DOI: 10.1101/gad.216531.113     Document Type: Article
Times cited : (91)

References (49)
  • 3
    • 84867573652 scopus 로고    scopus 로고
    • Structural analysis of the quaking homodimerization interface
    • Beuck C, Qu S, Fagg WS, Ares M Jr, Williamson JR. 2012. Structural analysis of the quaking homodimerization interface. J Mol Biol 423: 766-781.
    • (2012) J Mol Biol , vol.423 , pp. 766-781
    • Beuck, C.1    Qu, S.2    Fagg, W.S.3    Ares Jr., M.4    Williamson, J.R.5
  • 4
    • 77953644444 scopus 로고    scopus 로고
    • The Quaking family of RNA-binding proteins: Coordinators of the cell cycle and differentiation
    • Biedermann B, Hotz HR, Ciosk R. 2010. The Quaking family of RNA-binding proteins: Coordinators of the cell cycle and differentiation. Cell Cycle 9: 1929-1933.
    • (2010) Cell Cycle , vol.9 , pp. 1929-1933
    • Biedermann, B.1    Hotz, H.R.2    Ciosk, R.3
  • 5
    • 0031858861 scopus 로고    scopus 로고
    • Structure-function analysis of Qk1: A lethal point mutation in mouse quaking prevents homodimerization
    • Chen T, Richard S. 1998. Structure-function analysis of Qk1: A lethal point mutation in mouse quaking prevents homodimerization. Mol Cell Biol 18: 4863-4871.
    • (1998) Mol Cell Biol , vol.18 , pp. 4863-4871
    • Chen, T.1    Richard, S.2
  • 6
    • 0030879866 scopus 로고    scopus 로고
    • Selfassociation of the single-KH-domain family members Sam68, GRP33, GLD-1, and Qk1: Role of the KH domain
    • Chen T, Damaj BB, Herrera C, Lasko P, Richard S. 1997. Selfassociation of the single-KH-domain family members Sam68, GRP33, GLD-1, and Qk1: Role of the KH domain. Mol Cell Biol 17: 5707-5718.
    • (1997) Mol Cell Biol , vol.17 , pp. 5707-5718
    • Chen, T.1    Damaj, B.B.2    Herrera, C.3    Lasko, P.4    Richard, S.5
  • 7
    • 38849206330 scopus 로고    scopus 로고
    • New implications for the QUAKING RNA binding protein in human disease
    • Chenard CA, Richard S. 2008. New implications for the QUAKING RNA binding protein in human disease. J Neurosci Res 86: 233-242.
    • (2008) J Neurosci Res , vol.86 , pp. 233-242
    • Chenard, C.A.1    Richard, S.2
  • 9
    • 0031045585 scopus 로고    scopus 로고
    • Preparation of selenomethionyl proteins for phase determination
    • Doublié S. 1997. Preparation of selenomethionyl proteins for phase determination. Methods Enzymol 276: 523-530.
    • (1997) Methods Enzymol , vol.276 , pp. 523-530
    • Doublié, S.1
  • 10
    • 57649120777 scopus 로고    scopus 로고
    • Structure of a construct of a human poly(C)-binding protein containing the first and second KH domains reveals insights into its regulatory mechanisms
    • Du Z, Fenn S, Tjhen R, James TL. 2008. Structure of a construct of a human poly(C)-binding protein containing the first and second KH domains reveals insights into its regulatory mechanisms. J Biol Chem 283: 28757-28766.
    • (2008) J Biol Chem , vol.283 , pp. 28757-28766
    • Du, Z.1    Fenn, S.2    Tjhen, R.3    James, T.L.4
  • 11
    • 0029944722 scopus 로고    scopus 로고
    • The quaking gene product necessary in embryogenesis and myelination combines features of RNA binding and signal transduction proteins
    • Ebersole TA, Chen Q, Justice MJ, Artzt K. 1996. The quaking gene product necessary in embryogenesis and myelination combines features of RNA binding and signal transduction proteins. Nat Genet 12: 260-265.
    • (1996) Nat Genet , vol.12 , pp. 260-265
    • Ebersole, T.A.1    Chen, Q.2    Justice, M.J.3    Artzt, K.4
  • 12
    • 0028796703 scopus 로고
    • Gld-1, a tumor suppressor gene required for oocyte development in Caenorhabditis elegans
    • Francis R, Barton MK, Kimble J, Schedl T. 1995. gld-1, a tumor suppressor gene required for oocyte development in Caenorhabditis elegans. Genetics 139: 579-606.
    • (1995) Genetics , vol.139 , pp. 579-606
    • Francis, R.1    Barton, M.K.2    Kimble, J.3    Schedl, T.4
  • 13
    • 26944489263 scopus 로고    scopus 로고
    • Target RNA motif and target mRNAs of the Quaking STAR protein
    • Galarneau A, Richard S. 2005. Target RNA motif and target mRNAs of the Quaking STAR protein. Nat Struct Mol Biol 12: 691-698.
    • (2005) Nat Struct Mol Biol , vol.12 , pp. 691-698
    • Galarneau, A.1    Richard, S.2
  • 16
    • 0029015430 scopus 로고
    • Mutations in gld-1, a female germ cell-specific tumor suppressor gene in Caenorhabditis elegans, affect a conserved domain also found in Src-associated protein Sam68
    • Jones AR, Schedl T. 1995. Mutations in gld-1, a female germ cell-specific tumor suppressor gene in Caenorhabditis elegans, affect a conserved domain also found in Src-associated protein Sam68. Genes Dev 9: 1491-1504.
    • (1995) Genes Dev , vol.9 , pp. 1491-1504
    • Jones, A.R.1    Schedl, T.2
  • 17
    • 0030601942 scopus 로고    scopus 로고
    • GLD-1, a cytoplasmic protein essential for oocyte differentiation, shows stage- and sex-specific expression during Caenorhabditis elegans germline development
    • Jones AR, Francis R, Schedl T. 1996. GLD-1, a cytoplasmic protein essential for oocyte differentiation, shows stage- and sex-specific expression during Caenorhabditis elegans germline development. Dev Biol 180: 165-183.
    • (1996) Dev Biol , vol.180 , pp. 165-183
    • Jones, A.R.1    Francis, R.2    Schedl, T.3
  • 19
    • 0023940354 scopus 로고
    • Three ENU-induced alleles of the murine quaking locus are recessive embryonic lethal mutations
    • Justice MJ, Bode VC. 1988. Three ENU-induced alleles of the murine quaking locus are recessive embryonic lethal mutations. Genet Res 51: 95-102.
    • (1988) Genet Res , vol.51 , pp. 95-102
    • Justice, M.J.1    Bode, V.C.2
  • 22
    • 16644376235 scopus 로고    scopus 로고
    • Protection of p27(Kip1) mRNA by quaking RNA binding proteins promotes oligodendrocyte differentiation
    • Larocque D, Galarneau A, Liu HN, Scott M, Almazan G, Richard S. 2005. Protection of p27(Kip1) mRNA by quaking RNA binding proteins promotes oligodendrocyte differentiation. Nat Neurosci 8: 27-33.
    • (2005) Nat Neurosci , vol.8 , pp. 27-33
    • Larocque, D.1    Galarneau, A.2    Liu, H.N.3    Scott, M.4    Almazan, G.5    Richard, S.6
  • 24
    • 79952199135 scopus 로고    scopus 로고
    • C. elegans star proteins, GLD-1 and ASD-2, regulate specific RNA targets to control development
    • Lee MH, Schedl T. 2010. C. elegans star proteins, GLD-1 and ASD-2, regulate specific RNA targets to control development. Adv Exp Med Biol 693: 106-122.
    • (2010) Adv Exp Med Biol , vol.693 , pp. 106-122
    • Lee, M.H.1    Schedl, T.2
  • 27
    • 79955391375 scopus 로고    scopus 로고
    • Fine-tuning of Hh signaling by the RNA-binding protein Quaking to control muscle development
    • Lobbardi R, Lambert G, Zhao J, Geisler R, Kim HR, Rosa FM. 2011. Fine-tuning of Hh signaling by the RNA-binding protein Quaking to control muscle development. Development 138: 1783-1794.
    • (2011) Development , vol.138 , pp. 1783-1794
    • Lobbardi, R.1    Lambert, G.2    Zhao, J.3    Geisler, R.4    Kim, H.R.5    Rosa, F.M.6
  • 29
    • 77956542688 scopus 로고    scopus 로고
    • Structural basis for homodimerization of the Src-associated during mitosis, 68-kDa protein (Sam68) Qua1 domain
    • Meyer NH, Tripsianes K, Vincendeau M, Madl T, Kateb F, Brack-Werner R, Sattler M. 2010. Structural basis for homodimerization of the Src-associated during mitosis, 68-kDa protein (Sam68) Qua1 domain. J Biol Chem 285: 28893-28901.
    • (2010) J Biol Chem , vol.285 , pp. 28893-28901
    • Meyer, N.H.1    Tripsianes, K.2    Vincendeau, M.3    Madl, T.4    Kateb, F.5    Brack-Werner, R.6    Sattler, M.7
  • 31
    • 0033213391 scopus 로고    scopus 로고
    • The balance between two isoforms of the Drosophila RNAbinding protein how controls tendon cell differentiation
    • Nabel-Rosen H, Dorevitch N, Reuveny A, Volk T. 1999. The balance between two isoforms of the Drosophila RNAbinding protein how controls tendon cell differentiation. Mol Cell 4: 573-584.
    • (1999) Mol Cell , vol.4 , pp. 573-584
    • Nabel-Rosen, H.1    Dorevitch, N.2    Reuveny, A.3    Volk, T.4
  • 33
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • Otwinowski Z, Minor W. 1997. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 276: 307-326.
    • (1997) Methods Enzymol , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 35
    • 4344672685 scopus 로고    scopus 로고
    • Specificity of the STAR/GSG domain protein Qk1: Implications for the regulation of myelination
    • Ryder SP, Williamson JR. 2004. Specificity of the STAR/GSG domain protein Qk1: Implications for the regulation of myelination. RNA 10: 1449-1458.
    • (2004) RNA , vol.10 , pp. 1449-1458
    • Ryder, S.P.1    Williamson, J.R.2
  • 38
    • 37049231008 scopus 로고
    • Mutant mice (Quaking and Jimpy) with deficient myelination in the central nervous system
    • Sidman RL, Dickie MM, Appel SH. 1964. Mutant mice (Quaking and Jimpy) with deficient myelination in the central nervous system. Science 144: 309-311.
    • (1964) Science , vol.144 , pp. 309-311
    • Sidman, R.L.1    Dickie, M.M.2    Appel, S.H.3
  • 39
    • 57149097433 scopus 로고    scopus 로고
    • Structural insights into RNA recognition by the alternative-splicing regulator muscleblind-like MBNL1
    • Teplova M, Patel DJ. 2008. Structural insights into RNA recognition by the alternative-splicing regulator muscleblind-like MBNL1. Nat Struct Mol Biol 15: 1343-1351.
    • (2008) Nat Struct Mol Biol , vol.15 , pp. 1343-1351
    • Teplova, M.1    Patel, D.J.2
  • 41
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: Discovering splice junctions with RNA-seq
    • Trapnell C, Pachter L, Salzberg SL. 2009. TopHat: Discovering splice junctions with RNA-seq. Bioinformatics 25: 1105-1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 43
    • 0031451912 scopus 로고    scopus 로고
    • STAR, a gene family involved in signal transduction and activation of RNA
    • Vernet C, Artzt K. 1997. STAR, a gene family involved in signal transduction and activation of RNA. Trends Genet 13: 479-484.
    • (1997) Trends Genet , vol.13 , pp. 479-484
    • Vernet, C.1    Artzt, K.2
  • 44
    • 79952197675 scopus 로고    scopus 로고
    • Drosophila star proteins: What can be learned from flies?
    • Volk T. 2010. Drosophila star proteins: What can be learned from flies? Adv Exp Med Biol 693: 93-105.
    • (2010) Adv Exp Med Biol , vol.693 , pp. 93-105
    • Volk, T.1
  • 45
    • 38549159071 scopus 로고    scopus 로고
    • Tissue development and RNA control: 'HOW' is it coordinated?
    • Volk T, Israeli D, Nir R, Toledano-Katchalski H. 2008. Tissue development and RNA control: 'HOW' is it coordinated? Trends Genet 24: 94-101.
    • (2008) Trends Genet , vol.24 , pp. 94-101
    • Volk, T.1    Israeli, D.2    Nir, R.3    Toledano-Katchalski, H.4
  • 47
    • 0037007093 scopus 로고    scopus 로고
    • Function of quaking in myelination: Regulation of alternative splicing
    • Wu JI, Reed RB, Grabowski PJ, Artzt K. 2002. Function of quaking in myelination: Regulation of alternative splicing. Proc Natl Acad Sci 99: 4233-4238.
    • (2002) Proc Natl Acad Sci , vol.99 , pp. 4233-4238
    • Wu, J.I.1    Reed, R.B.2    Grabowski, P.J.3    Artzt, K.4
  • 49
    • 79851483839 scopus 로고    scopus 로고
    • Quaking regulates Hnrnpa1 expression through its 39 UTR in oligodendrocyte precursor cells
    • Zearfoss NR, Clingman CC, Farley BM, McCoig LM, Ryder SP. 2011. Quaking regulates Hnrnpa1 expression through its 39 UTR in oligodendrocyte precursor cells. PLoS Genet 7: e1001269.
    • (2011) PLoS Genet , vol.7
    • Zearfoss, N.R.1    Clingman, C.C.2    Farley, B.M.3    McCoig, L.M.4    Ryder, S.P.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.