Characteristic of the pepper CaRGA2 Gene in defense responses against Phytophthora capsici leonian

International Journal of Molecular Sciences

Volumn 14, Issue 5, 2013, Pages 8985-9004

  Zhang, Ying Li ^a   Jia, Qing Li ^a   Li, Da Wei ^a   Wang, Jun E ^a   Yin, Yan Xu ^a   Gong, Zhen Hui ^a  

^a NORTHWEST A F UNIVERSITY   (China)

Author keywords

Capsicum annuum L.; CaRGA2 gene; Functional analysis; Phytophthora blight; Phytophthora capsici Leonian; Virus induced gene silencing (VIGS)

Indexed keywords

COMPLEMENTARY DNA; OXIDOREDUCTASE; PHYTOENE DEHYDROGENASE; VEGETABLE PROTEIN;

ARTICLE; CARGA2 GENE; CONTROLLED STUDY; CROP PRODUCTION; CULTIVAR; DISEASE CONTROL; GENE EXPRESSION; GENE FUNCTION; GENE INDUCTION; GENE ISOLATION; GENE SILENCING; GENETIC ANALYSIS; GENOME SIZE; INFECTION RESISTANCE; INFECTION SENSITIVITY; INOCULATION; ISOELECTRIC POINT; MOLECULAR WEIGHT; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PEPPER; PHYTOPHTHORA CAPSICI; PLANT BREEDING; PLANT DEFENSE; PLANT GENE; PLANT LEAF; PROTEIN ANALYSIS; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; STRESS; VIRUS INDUCED GENE SILENCING; AMINO ACID SEQUENCE; CHEMISTRY; DISEASE RESISTANCE; DNA SEQUENCE; GENE EXPRESSION REGULATION; GENETICS; IMMUNOLOGY; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; PHENOTYPE; PHYLOGENY; PHYSIOLOGY; PHYTOPHTHORA; PLANT DISEASE; PROTEIN TERTIARY STRUCTURE; REPRODUCIBILITY; SEQUENCE ALIGNMENT;

CAPSICUM ANNUUM; LEONIA; PHYTOPHTHORA; PHYTOPHTHORA CAPSICI;

AMINO ACID SEQUENCE; CAPSICUM; DISEASE RESISTANCE; GENE EXPRESSION REGULATION, PLANT; GENE SILENCING; GENES, PLANT; MOLECULAR SEQUENCE DATA; OXIDOREDUCTASES; PHENOTYPE; PHYLOGENY; PHYTOPHTHORA; PLANT DISEASES; PLANT LEAVES; PLANT PROTEINS; PROTEIN STRUCTURE, TERTIARY; REPRODUCIBILITY OF RESULTS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

EID: 84876898659     PISSN: 16616596     EISSN: 14220067     Source Type: Journal    
DOI: 10.3390/ijms14058985     Document Type: Article

References (62)

1. Hwang, B.K.; Kim, C.H. Phytophthora blight of bell pepper and its control in Korea. Plant Dis. 1995, 79, 221-228.
2. Lee, B.K.; Kim, B.S.; Chang, S.W.; Hwang, B.K. Aggressiveness to pumpkin cultivars of isolates of Phytophthora capsici from pumpkin and bell pepper. Plant Dis. 2001, 85, 497-500.
3. Ristaino, J.B.; Johnston, S.A. Ecologically based approaches to management of Phytophthora blight on bell pepper. Plant Dis. 1999, 83, 1080-1089.
4. Hausbeck, M.K.; Lamour, K.H. Phytophthora capsici on vegetable crops: Research progress and management challenges. Plant Dis. 2004, 88, 1292-1303.
5. Biles, C.L.; Brunton, B.D.; Wall, M.M.; Rivas, M. Phytophthora capsici zoospore infection of pepper fruit in various physical environments. Proc. Okla. Acad. Sci. 1995, 75, 1-5.
6. Oelke, L.M.; Bosland, P.W. Differentiation of race specific resistance to Phytophthora root rot and foliar blight in Capsicum annuum. J. Am. Soc. Hortisc. Sci. 2003, 128, 213-218.
7. Baysal, O.; Turgut, C.; Mao, G. Acibenzolar-S-methyl induced resistance to Phytophthora capsici in pepper leaves. Biol. Plant 2005, 49, 599-604.
8. Candole, B.L.; Conner, P.J.; McGregor, C.; Waters, V. The disease reactions of heirloom bell pepper "California Wonder" to Phytophthora capsici. Agric. Sci. 2012, 3, 417-424.
9. Kousik, C.S.; Donahoo, R.S.; Hassell, R. Resistance in watermelon rootstocks to crown rot caused by Phytophthora capsici. Crop Prot. 2012, 39, 18-25.
10. Martin, G.B.; Bogdanove, A.J.; Sessa, G. Understanding the functions of plant disease resistance proteins. Annu. Rev. Plant Biol. 2003, 54, 23-61.
11. Dangl, J.L.; Jones, J.D. Plant pathogens and integrated defence responses to infection. Nature 2001, 411, 826-833.
12. Bai, J.; Pennill, L.A.; Ning, J.; Lee, S.W.; Ramalingam, J.; Webb, C.A.; Zhao, B.; Sun, Q.; Nelson, J.C.; Leach, J.E.; et al. Diversity in nucleotide binding site-leucine-rich repeat genes in cereals. Genome Res. 2002, 12, 1871-1884.
13. Cannon, S.B.; Zhu, H.; Baumgarten, A.M.; Spangler, R.; May, G.; Cook, D.R.; Young, N.D. Diversity, distribution, and ancient taxonomic relationships within the TIR and non-TIR NBS-LRR resistance gene subfamilies. J. Mol. Evol. 2002, 54, 548-562.
14. McDowell, J.M.; Simon, S.A. Recent insights into R gene evolution. Mol. Plant Pathol. 2006, 7, 437-448.
15. Leng, X.D.; Xiao, B.G.; Wang, S.; Gui, X.J.; Wang, Y.; Lu, X.P.; Xie, J.H.; Li, Y.P.; Fan, L.G. Identification of NBS-type resistance gene homologs in tobacco genome. Plant Mol. Biol. Rep. 2010, 28, 152-161.
16. He, C.Y.; Tian, A.G.; Zhang, J.S.; Zhang, Z.Y.; Gai, J.Y.; Chen, S.Y. Isolation and characterization of a full-length resistance gene homolog from soybean. Theor. Appl. Genet. 2003, 106, 786-793.
17. Radwan, O.; Bouzidi, M.F.; Vear, F.; Philippon, J.; Tourvieille Labrouche, D.; Nicolas, P.; Mouzeyar, S. Identification of non TIR-NBS-LRR markers linked to the PI5/PI8 locus for resistance to downy mildew in sunflower. Theor. Appl. Genet. 2003, 106, 1438-1446.
18. Yan, G.; Chen, X.; Line, R.; Wellings, C. Resistance geneanalog polymorphism markers co-segregating with the YR5 gene for resistance to wheat stripe rust. Theor. Appl. Genet. 2003, 106, 636-643.
19. Gutierrez, N.; Giménez, M.J.; Torres, A.M.; Atienza, S.G.; Avila, C.M.; Palomino, C. Up-regulation of resistance gene analogs (RGA) in chickpea in the early response to Fusarium wilt. Euphytica 2012, 186, 793-804.
20. Holzberg, S.; Brosio, P.; Gross, C.; Pogue, G. Barley stripe mosaic virus induced gene silencing in a monocot plant. Plant J. 2002, 30, 315-327.
21. Cai, X.Z.; Xu, Q.F.; Wang, C.C.; Zheng, Z. Development of a virus-induced gene-silencing system for functional analysis of the RPS2-dependent resistance signalling pathways in Arabidopsis. Plant Mol. Biol. 2006, 62, 223-232.
22. Baulcombe, D.C. Fast forward genetics based on virus-induced gene silencing. Curr. Opin. Plant Biol. 1999, 2, 109-113.
23. Dinesh-Kumar, S.P.; Anandalakshmi, R.; Marathe, R.; Schiff, M.; Liu, Y. Virus-induced gene silencing. Methods Mol. Biol. 2003, 236, 287-294.
24. Kumar, M.S.; Govind, G.; Kang, L.; Mysore, K. S; Udayakumar, M. Functional characterization of Nicotiana benthamiana homologs of peanut water deficit-induced genes by virus-induced gene silencing. Planta 2007, 225, 523-539.
25. Liu, Y.; Schiff, M.; Marathe, R.; Dinesh-Kumar, S.P. Tobacco Rar1, EDS1 and NPR1/NIM1 like genes are required for N-mediated resistance to tobacco mosaic virus. Plant J. 2002, 30, 415-429.
26. Ratcliff, F.; Martin-Hernandez, A.M.; Baulcombe, D.C. Technical advance: Tobacco rattle virus as a vector for analysis of gene function by silencing. Plant J. 2001, 25, 237-245.
27. Chung, E.; Seong, E.; Kim, Y.C.; Chung, E.J.; Oh, S.K.; Lee, S.; Park, J.M.; Joung, Y.H.; Choi, D. A method of high frequency virus-induced gene silencing in chili pepper (Capsicum annuum L. cv. Bukang). Mol. Cells 2004, 17, 377-380.
28. Brigneti, G.; Martin-Hernandez, A.M.; Jin, H.; Chen, J.; Baulcombe, D.C.; Baker, B.; Jones, J.D. Virus-induced gene silencing in Solanum species. Plant J. 2004, 39, 264-272.
29. Hileman, L.C.; Drea, S.; Martino, G.; Litt, A.; Irish, V.F. Virus-induced gene silencing is an effective tool for assaying gene function in the basal eudicot species Papaver somniferum (opium poppy). Plant J. 2005, 44, 334-341.
30. Gould, B.; Kramer, E.M. Virus-induced gene silencing as a tool for functional analyses in the emerging model plant Aquilegia (columbine, Ranunculaceae). Plant Methods 2007, doi:10.1186/1746-4811-3-6.
31. Wege, S.; Scholz, A.; Gleissberg, S.; Becker, A. Highly efficient virus induced gene silencing (VIGS) in California poppy (Eschscholzia californica): An evaluation of VIGS as a strategy to obtain functional data from non-model plants. Ann. Bot. (Lond.) 2007, 100, 641-649.
32. Burch-Smith, T.M.; Schiff, M.; Liu, Y.; Dinesh-Kumar, S.P. Efficient virus induced gene silencing in Arabidopsis. Plant Physiol. 2006, 142, 21-27.
33. Liu, E.W.; Page, J.E. Optimized cDNA libraries for virus-induced gene silencing (VIGS) using tobacco rattle virus. Plant Methods 2008, doi:10.1186/1746-4811-4-5.
34. Liu, Y.; Schiff, M.; Dinesh-Kumar, S.P. Virus-induced gene silencing in tomato. Plant J. 2002, 31, 777-786.
35. Kumagai, M.H.; Donson, J.; Della-Cioppa, G.; Harvey, D.; Hanley, K.; Grill, L.K. Cytoplasmic inhibition of carotenoid biosynthesis with virus-derived RNA. Proc. Natl. Acad. Sci. USA 1995, 92, 1679-1683.
36. Bioinformatics Tool. Available online: http://www.ncbi.nlm.nih.gov/BLAST/ (accessed on 23 December 2012).
37. Zheng, X.B. Phytophthora and Its Research Techniques; Agricultural Press: Beijing, China, 1997; pp. 10-132.
38. Silvar, C.; Díaz, J.; Merino, F. Real-time polymerase chain reaction quantification of Phytophthora capsici in different pepper genotypes. Phytopathology 2005, 95, 1423-1429.
39. Pena-Cortés, H.; Albrecht, T.; Prat, S.; Weiler, E.W.; Willmitzer, L. Aspirin prevents wound-induced gene-expression in tomato leaves blocking jasmonic acid biosynthesis. Planta 1993, 191, 123-128.
40. Yoshimura, S.; Yamanouchi, U.; Katayose, Y.; Toki, S. Expression of Xa1, a bacterial blight-resistance gene in rice, is induced by bacterial inoculation. Proc. Natl. Acad. Sci. USA 1998, 95, 1663-1668.
41. Wan, H.J.; Zhao, Z.Z.; Malik, A.A.; Qian, C.; Chen, J.F. Identification and characterization of potential NBS-encoding resistance genes and induction kinetics of a putative candidate gene associated with downy mildew resistance in Cucumis. BMC Plant Biol. 2010, 10, e186.
42. Wang, Z.X.; Yamanouchi, U.; Katayose, Y.; Sasaki, T.; Yano, M. Expression of the Pib rice-blast-resistance gene family is up-regulated by environmental conditions favoring infection and by chemical signals that trigger secondary plant defences. Plant Mol. Biol. 2001, 47, 653-661.
43. Wang, Z.X.; Yano, M.; Yamanouchi, U.; Iwamoto, M.; Monna, L.; Hayasaka, H.; Katayose, Y.; Sasaki, T. The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes. Plant J. 1999, 19, 55-64.
44. Thurau, T.; Sirak, K.; Jung, C.; Cai, D. The promoter of the nematode resistance gene Hs1pro-1 activates a nematode-responsive and feeding site-specific gene expression in sugar beet (Beta vulgaris L.) and Arabidopsis thaliana. Plant Mol. Biol. 2003, 52, 643-660.
45. Silvar, C.; Merino, F.; Díaz, J. Differential activation of defence-related genes in different pepper cultivars infected with Phytophthora capsici. J. Plant Physiol. 2008, 165, 1120-1124.
46. Zhang, Y.; Wang, X.F.; Yang, S.; Chi, J.; Zhang, G.Y.; Ma, Z.Y. Cloning and characterization of a Verticillium wilt resistance gene from Gossypium barbadense and functional analysis in Arabidopsis thaliana. Plant Cell Rep. 2011, 30, 2085-2096.
47. Lu, R.; Malcuit, I.; Moffett, P.; Ruiz, M.T.; Peart, J.; Wu, A.J.; Rathjen, J.P.; Bendahmane, A.; Day, L.; Baulcombe, D.C. High throughput virus-induced gene silencing implicates heat shock protein 90 in plant disease resistance. EMBO J. 2003, 22, 5690-5699.
48. Burch-Smith, T.M.; Anderson, J.C.; Martin, G.B.; Dinesh-Kumar, S.P. Applications and advantages of virus induced gene silencing for gene function studies in plants. Plant J. 2004, 39, 734-746.
49. Fu, D.Q.; Zhu, B.Z.; Zhu, H.L.; Jiang, W.B.; Luo, Y.B. Virus induced gene silencing in tomato fruit. Plant J. 2005, 43, 299-308.
50. Lu, R.; Marti{dotless}n-Hernandez, A.M.; Peart, J.R.; Malcuit, I.; Baulcombe, D.C. Virus-induced gene silencing in plants. Methods 2003, 30, 296-303.
51. Wang, J.E.; Liu, K.K.; Li, D.W.; Zhang, Y.L.; Zhao, Q.; He, Y.M.; Gong, Z.H. A novel peroxidase canPOD gene of pepper is involved in defense responses to Phytophtora capsici infection as well as abiotic stress tolerance. Int. J. Mol. Sci. 2013, 14, 3158-3177.
52. Hong, J.K.; Choi, D.S.; Kim, S.H.; Yi, S.H.; Kim, Y.J.; Hwang, B.K. Distinct roles of the pepper pathogen-induced membrane protein gene CaPIMP1 in bacterial disease resistance and oomycete disease susceptibility. Planta 2008, 228, 485-497.
53. Sarowar, S.; Kim, Y.J.; Kim, K.D.; Hwang, B.K.; Ok, S.H. Overexpression of lipid transfer protein (LTP) genes enhances resistance to plant pathogens and LTP functions in long-distance systemic signaling in tobacco. Plant Cell Rep. 2009, 28, 419-427.
54. Shan, X.C.; Goodwin, P.H. Silencing an ACC oxidase gene affects the susceptible host response of Nicotiana benthamiana to infection by Colletotrichum orbiculare. Plant Cell Rep. 2006, 25, 241-247.
55. Shi, X.L.; Tian, Z.D.; Liu, J.; Edwin, A.G.; Xie, C.H. A potato pathogenesis-related protein gene, StPRp27, contributes to race-nonspecific resistance against Phytophthora infestans. Mol. Biol. Rep. 2012, 39, 1909-1916.
56. Mihovilovich, E.; Munive, S.; Bonierbale, M. Influence of daylength and isolates of Phytophthora infestans on field resistance to late blight of potato. Theor. Appl. Genet. 2010, 120, 1265-1278.
57. Brodersen, P.; Petersen, M.; Bjørn-Nielsen, H.; Zhu, S.; Newman, M.A.; Shokat, K.M.; Rietz, S.; Parker, J.; Mundy, J. Arabidopsis MAPkinase 4 regulates salicylic acid-and jasmonic acid/ethylenedependent responses via EDS1 and PAD4. Plant J. 2006, 47, 532-546.
58. Yeom, S.I.; Baek, H.K.; Oh, S.K.; Kang, W.H. Use of a secretion trap screen in pepper following Phytophthora capsici infection reveals novel functions of secreted plant proteins in modulating cell death. Mol. Plant Microbe Interact. 2011, 24, 671-684.
59. Hong, J.K.; Hwang, B.K. Induction by pathogen, salt and drought of a basic class II chitinase mRNA and its in situ localization in pepper (Capsicum annuum). Physiol. Plant. 2002, 114, 549-558.
60. Wan, H.J.; Yuan, W.; Ruan, M.Y.; Ye, Q.J.; Wang, R.Q.; Li, Z.M.; Zhou, G.Z.; Yao, Z.P.; Zhao, J.; Liu, S.J.; et al. Identification of reference genes for reverse transcription quantitative real-time PCR normalization in pepper (Capsicum annuum L.). Biochem. Biophys. Res. Commun. 2011, 416, 24-30.
61. Wang, C.; Cai, X.; Wang, X.; Zheng, Z. Optimisation of tobacco rattle virus-induced gene silencing in Arabidopsis. Funct. Plant Biol. 2006, 33, 347-355.
62. An, S.H.; Choi, H.W.; Hwang, I.S.; Hong, J.K.; Hwang B.K. A novel pepper membrane-ocated receptor-like protein gene CaMRP1 is required for disease susceptibility, methyl jasmonate insensitivity and salt tolerance. Plant Mol. Biol. 2008, 67, 519-533.