Assembly in vitro of Rhodococcus jostii RHA1 encapsulin and peroxidase DypB to form a nanocompartment

FEBS Journal

Volumn 280, Issue 9, 2013, Pages 2097-2104

  Rahmanpour, Rahman ^a   Bugg, Timothy D H ^a  

^a UNIVERSITY OF WARWICK   (United Kingdom)

Author keywords

encapsulin; lignin; nanocompartment; peroxidase DypB

Indexed keywords

BACTERIAL PROTEIN; ENCAPSULIN PROTEIN; LIGNIN; PEROXIDASE; PROTEIN DYPB; RECOMBINANT PROTEIN; RECOMBINANT PROTEIN DYPB; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GENE; BIODEGRADATION; CARBOXY TERMINAL SEQUENCE; CRYSTAL STRUCTURE; IN VITRO STUDY; NONHUMAN; PH; PREDICTIVE VALUE; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN EXPRESSION; PROTEIN PURIFICATION; PROTEIN STRUCTURE; PROTEIN TARGETING; RHODOCOCCUS; RHODOCOCCUS JOSTII; THERMOTOGA MARITIMA;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CHROMATOGRAPHY, GEL; CONSERVED SEQUENCE; HYDROGEN-ION CONCENTRATION; LIGHT; MOLECULAR SEQUENCE DATA; MULTIPROTEIN COMPLEXES; PEROXIDASES; PROTEIN MULTIMERIZATION; PROTEIN STRUCTURE, QUATERNARY; RHODOCOCCUS; SCATTERING, RADIATION;

BACTERIA (MICROORGANISMS); RHODOCOCCUS JOSTII; THERMOTOGA MARITIMA;

EID: 84876887523     PISSN: 1742464X     EISSN: 17424658     Source Type: Journal    
DOI: 10.1111/febs.12234     Document Type: Article

References (16)

1. Yeates TO, Crowley CS, &, Tanaka S, (2010) Bacterial microcompartment organelles: protein shell structure and evolution. Annu Rev Biophys 39, 185-205.
2. Tanaka S, Kerfeld CA, Sawaya MR, Cai F, Heinhorst S, Cannon GC, &, Yeates TO, (2008) Atomic-level models of the bacterial carboxysome shell. Science 319, 1083-1086. (Pubitemid 351300788)
3. 12-dependent degradation of 1,2-propanediol in Salmonella enterica serovar Typhimurium LT2. J Bacteriol 184, 1253-1261. (Pubitemid 34157546)
4. Tanaka S, Sawaya MR, &, Yeates TO, (2010) Structure and mechanisms of a protein-based organelle in Escherichia coli. Science 327, 81-84.
5. Sutter M, Boehringer D, Gutmann S, Günther S, Prangishvili D, Loessner MJ, Stetter KO, Weber-Ban E, &, Ban N, (2008) Structural basis of enzyme encapsulation into a bacterial nanocompartment. Nat Struct Mol Biol 15, 939-947.
6. Valdes-Stauber N, &, Scherer S, (1994) Isolation and characterization of linocin M18, a bacteriocin produced by Brevibacterium linens. Appl Environ Microbiol 60, 3809-3814. (Pubitemid 24298879)
7. Rosenkrands L, Rasmussen PB, Carnio M, Jacobsen S, Theisen M, &, Andersen P, (1998) Identification and characterization of a 29-kDa protein from Mycobacterium tuberculosis culture filtrate recognized by mouse memory effector cells. Infect Immun 66, 2728-2735. (Pubitemid 28261776)
8. Ahmad M, Roberts JN, Hardiman EM, Singh R, Eltis LD, &, Bugg TDH, (2011) Identification of DypB from Rhodococcus jostii RHA1 as a lignin peroxidase. Biochemistry 50, 5096-5107.
9. Ahmad M, Taylor CR, Pink D, Burton K, Eastwood D, Bending GD, &, Bugg TDH, (2010) Development of novel assays for lignin degradation: comparative analysis of bacterial and fungal lignin degraders. Mol BioSyst 6, 815-821.
10. McLeod MP, Warren RL, Hsiao WWL, Araki N, Myhre M, Femandes C, Miyazawa D, Wong W, Lillquist AL, Wang D, et al,. (2006) The complete genome of Rhodococcus sp. RHA1 provides insights into a catabolic powerhouse. Proc Natl Acad Sci USA 103, 15582-15587. (Pubitemid 44625635)
11. Moradian-Oldak J, Paine ML, Lei YP, Fincham AG, &, Snead ML, (2000) Self-assembly properties of recombinant engineered amelogenin proteins analysed by dynamic light scattering and atomic force microscopy. J Struct Biol 131, 27-37.
12. Palonen H, Tjerneld F, Zacchi G, &, Tenkanen M, (2004) Adsorption of Trichoderma reesei CBH1 and EGII and their catalytic domains on steam-pretreated softwood and isolated lignin. J Biotechnol 107, 65-72. (Pubitemid 38010270)
13. Eriksson T, Börjesson J, &, Tjerneld F, (2002) Mechanism of surfactant effect in enzymatic hydrolysis of lignocellulose. Enzyme Microb Technol 31, 353-364. (Pubitemid 34790241)
14. Johjima T, Itoh N, Kabuto M, Tokimura F, Nakagawa T, Wariishi H, &, Tanaka H, (1999) Direct interaction of lignin and lignin peroxidase from Phanerochaete chrysosporium. Proc Natl Acad Sci USA 96, 1989-1994. (Pubitemid 29117855)
15. 1-dehydrogenase, in Rhodococcus erythropolis SQ1 using sacB as counter-selectable marker. FEMS Microbiol Lett 205, 197-202. (Pubitemid 34031920)
16. Nakashima N, &, Tamura T, (2004) Isolation and characterization of a rolling-circle-type plasmid from Rhodococcus erythropolis and application of the plasmid to multiple-recombinant-protein expression. Appl Environ Microbiol 70, 5557-5568. (Pubitemid 39279634)