Streptomyces bullii sp. nov., isolated from a hyper-arid Atacama Desert soil

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 103, Issue 2, 2013, Pages 367-373

  Santhanam, Rakesh ^a   Rong, Xiaoying ^b   Huang, Ying ^b   Andrews, Barbara A ^c   Asenjo, Juan A ^c   Goodfellow, Michael ^a  

^a NEWCASTLE UNIVERSITY   (United Kingdom)

^b INSTITUTE OF MICROBIOLOGY   (China)

^c UNIVERSITY OF CHILE   (Chile)

Author keywords

Polyphasic taxonomy; Streptomyces

Indexed keywords

BACTERIAL DNA; RNA 16S;

ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; BACTERIUM ISOLATION; CHEMOTAXONOMY; CONTROLLED STUDY; DESERT; GENE SEQUENCE; GENETIC SIMILARITY; GENETIC VARIABILITY; MICROBIAL MORPHOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPIC VARIATION; PHYLOGENETIC TREE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SOIL MICROFLORA; STREPTOMYCES; STREPTOMYCES BULLII; STREPTOMYCES CHROMOFUSCUS; STREPTOMYCES FRAGILIS; STREPTOMYCETACEAE;

BACTERIAL TYPING TECHNIQUES; CLUSTER ANALYSIS; DESERT CLIMATE; DNA, BACTERIAL; DNA, RIBOSOMAL; MICROSCOPY, ELECTRON, SCANNING; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; STREPTOMYCES;

STREPTOMYCES; STREPTOMYCES CHROMOFUSCUS; STREPTOMYCES FRAGILIS;

EID: 84876849655     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-012-9816-x     Document Type: Article

References (34)

1. Antony-Babu S, Goodfellow M (2008) Biosystematics of alkaliphilic streptomycetes isolated from seven locations across a beach and dune sand system. Antonie Van Leeuwenhoek 94:581-591
2. Athalye M, Lacey J, Goodfellow M (1981) Selective isolation and enumeration of actinomycetes using rifampicin. J Appl Microbiol 51:289-299
3. Collins MD, Goodfellow M, Minnikin DE, Alderson G (1985) Menaquinone composition of mycolic acid-containing actinomycetes and some sporoactinomycetes. J Appl Bacteriol 58:77-86
4. Euzéby J P (2012) List of bacterial names with standing in nomenclature: a folder available on the Internet. (Last full update: 06 July 2012) http://www.bacterio.cict.fr/
5. Ezaki T, Hashimoto Y, Yabuuchi E (1989) Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39:224-229
6. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
7. Fitch WM (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zoolog 20:406-416
8. Goodfellow M, Fiedler HP (2010) A guide to successful bioprospecting: informed by actinobacterial systematics. Antonie Van Leeuwenhoek 98:119-142
9. Hasegawa T, Takizawa M, Tanida S (1983) A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29:319-322
10. Jones KL (1949) Fresh isolates of actinomycetes in which the presence of sporogenous aerial mycelia is a fluctuating characteristic. J Bacteriol 57:141-145
11. Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro HN (ed) Mammalian protein metabolism. Academic Press, London, pp 21-132
12. AL emend. Witt and Stackebrandt 1990, 370, emend. Wellington, Stackebrandt, Sanders, Wolstrup and Jorgensen 1992, 159. In: Goodfellow M, Kämpfer P, Busse H-J, Trujillo ME, Suzuki K-I, Ludwig W, Whitman WB (eds) Bergey's manual of systematic bacteriology, Part B, vol 5, 2nd edn. Springer, New York, pp 1455-1767
13. Kawato M, Shinobu R (1959) On Streptomyces herbaricolor sp. nov., supplement: a simple technique for microscopical observation. Mem Osaka Univ Lib Arts Educ B Nat Sci 8:114-119
14. Kim S-B, Goodfellow M (2002) Streptomyces thermospinisporus sp. nov., a moderately thermophilic carboxydotrophic streptomycete isolated from soil. Int J Syst Evol Microbiol 52:1225-1228
15. Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, Park S, Jeon YS, Lee JH, Yi H, Won S, Chun J (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62:716-721
16. Labeda DP, Goodfellow M, Brown R, Ward AC, Lanoot C, Vanncanneyt M, Swings J, Kim S-B, Liu Z, Chun J, Tamura T, Oguchi A, Kikuchi T, Kikuchi H, Nishii T, Tsuji K, Yamaguchi Y, Tase A, Takahashi M, Sakane T, Suzuki KI, Hatano K (2012) Phylogenetic study of the species within the family Streptomycetaceae. Antonie Van Leeuwenhoek 101(1):73-104
17. Mesbah M, Premachandran U, Whitman WB (1989) Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39:159-167
18. Nachtigall J, Kulik Helaly S, Bull AT, Goodfellow M, Arenjo JA, Maier A, Wiese J, Inhoff JF, Süssmuth R-D, Fiedler H-P (2011) Atacamycins A-C, 22 membered antitumor macrolide derivatives produced by Streptomyces sp. C38. J Antibiot 64:775-780
19. O'Donnell AG, Falconer C, Goodfellow M, Ward AC, Williams E (1993) Biosystematics and diversity amongst novel carboxydotrophic actinomycetes. Antonie Van Leeuwenhoek 64:325-340
20. Okoro CK, Brown R, Jones AL, Andrews BA, Asenjo JA, Goodfellow M, Bull AT (2009) Diversity of culturable actinomycetes in hyper-arid soils of the Atacama Desert, Chile. Antonie Van Leeuwenhoek 95:121-133
21. Rateb ME, Houssen WE, Arnold M, Abdelrahman M-H, Deng H, Harrison WTA, Okoro CK, Asenjo JA, Andrews BA, Ferguson G, Bull AT, Goodfellow M, Ebel R, Jaspars M (2011a) Chaxamycins A-D, bioactive ansamycins from a hyper-arid desert Streptomyces sp. J Nat Prod 74:1965-1971
22. Rateb ME, Houssen WE, Harrison WT, Deng H, Okoro CK, Asenjo JA, Andrews BA, Bull AT, Goodfellow M, Ebel R, Jaspars M (2011b) Diverse metabolic profiles of a Streptomyces strain isolated from a hyper-arid environment. J Nat Prod 74:1491-1499
23. Rong X, Huang Y (2010) Taxonomic evaluation of the Streptomyces griseus clade using multilocus sequence analysis and DNA-DNA hybridization, with proposal to combine 29 species and three subspecies as 11 genomic species. Int J Syst Evol Microbiol 60:696-703
24. Rzhetsky A, Nei M (1992) A simple method for estimating and testing minimum evolution trees. Mol Biol Evol 9:945-967
25. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
26. Santhanam R, Okoro CK, Rong X, Huang Y, Bull AT, Andrews BA, Asenjo AJ, Weon HY, Goodfellow M (2012a) Streptomyces deserti sp. nov., isolated from hyper-arid desert soil. Antonie Van Leeuwenhoek 101:575-581
27. Santhanam R, Okoro CK, Rong X, Huang Y, Bull AT, Goodfellow M (2012b) Streptomyces atacamensis sp. nov., isolated from an extreme hyper-arid soil of the Atacama Desert. Int J Syst Evol Microbiol (in press)
28. Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. MIDI Inc., Newark
29. Schulze D, Beese P, Ohlenderf B, Erhard A, Zinecker H, Dorador C, Imhoff J (2011) Abenquines A-D: aminoquinone derivatives produced by Streptomyces sp. strain DB634. J Antibiot 64:763-768
30. Shirling EB, Gottlieb D (1966) Methods for characterization of Streptomyces species. Int J Syst Evol Microbiol 16:313-340
31. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731-2739
32. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
33. Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, Krichevsky MI, Moore LH, Moore WEC, Murray R-G-E et al (1987) International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463-464
34. Williams ST, Goodfellow M, Alderson G, Wellington EMH, Sneath PHA, Sackin MJ (1983) Numerical classification of Streptomyces and related genera. J Gen Microbiol 129:1743-1813