Streptomyces deserti sp. nov., isolated from hyper-arid Atacama Desert soil

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 101, Issue 3, 2012, Pages 575-581

  Santhanam, Rakesh ^a   Okoro, Chinyere K ^a   Rong, Xiaoying ^b   Huang, Ying ^b   Bull, Alan T ^a,c   Andrews, Barbara A ^d   Asenjo, Juan A ^d   Weon, Hang Yeon ^e   Goodfellow, Michael ^a  

^a NEWCASTLE UNIVERSITY   (United Kingdom)

^b INSTITUTE OF MICROBIOLOGY   (China)

^c UNIVERSITY OF KENT   (United Kingdom)

^d UNIVERSITY OF CHILE   (Chile)

^e National Institute of Agricultural Science   (South Korea)

Author keywords

Actinomycetes; Atacama Desert; Streptomyces

Indexed keywords

DNA; RNA 16S;

ARTICLE; BACTERIUM ISOLATE; CONTROLLED STUDY; DNA HYBRIDIZATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SOIL ANALYSIS; STREPTOMYCES; STREPTOMYCES COERULEORUBIDUS; STREPTOMYCES DESERTI; STREPTOMYCES LOMONDENSIS; STREPTOMYCES LUSITANUS;

CARBON; CHILE; CULTURE MEDIA; DESERT CLIMATE; DNA, BACTERIAL; DNA, RIBOSOMAL; HUMIDITY; MOLECULAR SEQUENCE DATA; NITROGEN; PHENOTYPE; PHYLOGENY; RIBOTYPING; RNA, RIBOSOMAL, 16S; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, NUCLEIC ACID; SOIL MICROBIOLOGY; SPECIES SPECIFICITY; STREPTOMYCES;

ACTINOBACTERIA (CLASS); STREPTOMYCES; STREPTOMYCES COERULEORUBIDUS; STREPTOMYCES LOMONDENSIS; STREPTOMYCES LUSITANUS;

EID: 84857917542     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-011-9672-0     Document Type: Article

References (32)

1. Chun J, Goodfellow M (1995) A phylogenetic analysis of the genus Nocardia with 16S rRNA gene sequences. Int J Syst Bacteriol 45:240-245
2. Chun J, Lee J-H, Jung Y, Kim M, Kim S, Kim B-K, Lim Y-W (2007) EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57:2259-2261 (Pubitemid 350031697)
3. Collins MD (1985) Isoprenoid quinone analysis in bacterial classification and identification. In: Goodfellow M, Minnikin DE (eds) Chemical methods in bacterial systematics. Academic Press, London, pp 267-287
4. De Ley J, Cattour H, Reynaerts A (1970) The qualitative measurement of DNA hybridization from renaturation rates. J Biochem 12:133-142
5. Euzéby JP (2011) List of bacterial names with standing in nomenclature: a folder available on the Internet. Last full update 9 Sep 2011. http://www.bacterio.cict.fr/
6. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
7. Fitch WM (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20:406-416
8. Goodfellow M, Fiedler HP (2010) A guide to successful bioprospecting: informed by actinobacterial systematics. Antonie van Leeuwenhoek 98:119-142
9. Hasegawa T, Takizawa M, Tanida S (1983) A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29:319-322 (Pubitemid 14176930)
10. Jones KL (1949) Fresh isolates of actinomycetes in which the presence of sporogenous aerial mycelia is a fluctuating characteristic. J Bacteriol 57:141-145
11. Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro HN (ed) Mammalian protein metabolism. Academic Press, London, pp 21-132
12. Kawato M, Shinobu R (1959) On Streptomyces herbaricolor sp. nov., supplement: a simple technique for microscopical observation. Mem Osaka Univ Lib Arts Educ B 8:114-119
13. Kumar Y, Goodfellow M (2010) Reclassification of Streptomyces hygroscopicus strains as Streptomyces aldersoniae sp. nov., Streptomyces angustmyceticus sp. nov., comb. nov., Streptomyces ascomycinicus sp. nov., Streptomyces decoyicus sp. nov., comb. nov., Streptomyces milbemycinicus sp. nov. and Streptomyces wellingtoniae sp. nov. Int J Syst Evol Microbiol 60:769-775
14. Labeda DP, Goodfellow M, Brown R, Ward AC, Lanoot C, Vanncanneyt M, Swings J, Kim S-B, Liu Z, Chun J, Tamura T, Oguchi A, Kikuchi T, Kikuchi H, Nishii T, Tsuji K, Yamaguchi Y, Tase A, Takahashi M, Sakane T, Suzuki KI, Hatano K (2011) Phylogenetic study of the species within the family Streptomycetaceae. Antonie van Leeuwenhoek (in press)
15. Manfio GP, Zakrzewska-Czerwinska J, Atalan E, Goodfellow M (1995) Towards minimal standards for the description of Streptomyces species. Biotechnologia 7-8:242-253
16. Mao J, Wang J, Dai H-Q, Zhang Z-D, Tang Q-Y, Ren B, Yang N, Goodfellow M, Zhang L-X, Liu Z-H (2011) Yuhushiella deserti gen. nov., sp. nov., a new member of the suborder Pseudonocardineae. Int J Syst Evol Microbiol 61:621-630
17. Minnikin DE, O'Donnell AG, Goodfellow M, Alderson G, Athalye M, Schaal A, Parlett JH (1984) An integrated procedure for the extraction of isoprenoid quinones and polar lipids. J Microbiol Methods 2:233-241 (Pubitemid 14058168)
18. Nachtigall J, Kulik A, Bull AT, Goodfellow M, Arenjo JA, Maier A, Wiese J, Inhoff JF, Süssmuth R-D, Fiedler H-P (2011) Atacamycins A-C, 22 membered antitumor macrolide derivatives produced by Streptomyces sp. C38. J Antibiot (in press)
19. O'Donnell AG, Falconer C, Goodfellow M, Ward AC, Williams E (1993) Biosystematics and diversity amongst novel carboxydotrophic actinomycetes. Antonie van Leeuwenhoek 64:325-340 (Pubitemid 24151596)
20. Okoro CK, Brown R, Jones AL, Andrews BA, Asenjo JA, Goodfellow M, Bull AT (2009) Diversity of culturable actinomycetes in hyper-arid soils of the Atacama Desert, Chile. Antonie van Leeuwenhoek 95:121-133
21. Okoro CK, Bull AT, Mutreja A, Rong X, Huang Y, Goodfellow M (2010) Lechevalieria atacamensis sp. nov., Lechevalieria deserti sp. nov. and Lechevalieria roselyniae sp. nov., isolated from hyper-arid soils. Int J Syst Evol Microbiol 60:296-300
22. Rateb ME, Houssen WE, Arnold M, Abdelrahman M-H, Deng H, Harrison WTA, Okoro CK, Asenjo JA, Andrews BA, Ferguson G, Bull AT, Goodfellow M, Ebel R, Jaspars M (2011) Chaxamycins A-D, bioactive ansamycins from a hyper-arid desert Streptomyces sp. J Nat Prod 74: 1491-1499
23. Rzhetsky A, Nei M (1992) A simple method for estimating and testing minimum evolution trees. Mol Biol Evol 9:945-967
24. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
25. Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. MIDI Inc, Newark
26. Shirling EB, Gottlieb D (1966) Methods for characterization of Streptomyces species. Int J Syst Evol Microbiol 16:313-340
27. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596-1599 (Pubitemid 47236692)
28. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680 (Pubitemid 24354800)
29. Vickers JC, Williams ST, Ross GW (1984) A taxonomic approach to selective isolation of streptomycetes from soil. In: Ortiz-Ortiz L, Bojalil LF, Yakoleff V (eds) Biological, biochemical and biomedical aspects of actinomycetes. Academic Press, Orlando, pp 553-561
30. Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, Krichevsky MI, Moore LH, Moore WEC, Murray R-G-E et al (1987) International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37:463-464
31. Williams ST, Goodfellow M, Alderson G, Wellington EMH, Sneath PHA, SackinMJ (1983) Numerical classification of Streptomyces and related genera. J Gen Microbiol 129: 1743-1813 (Pubitemid 13044278)
32. Williams ST, Goodfellow M, Alderson G (1989) Genus Streptomyces Waksman and Henrici 1943, 339AL. In: Williams ST, Sharpe ME, Holt JG (eds) Bergey's manual of systematic bacteriology, vol 4. Williams & Wilkins, Baltimore, pp 2452-2492