Clinical value of IS6110-based loop-mediated isothermal amplification for detection of Mycobacterium tuberculosis complex in respiratory specimens

Journal of Infection

Volumn 66, Issue 6, 2013, Pages 487-493

  Aryan, Ehsan ^a   Makvandi, Manoochehr ^b   Farajzadeh, Ahmad ^b   Huygen, Kris ^c   Alvandi, Amir Hooshang ^d   Gouya, Mohammad Mehdi ^e   Sadrizadeh, Ali ^f   Romano, Marta ^c  

^a MASHHAD UNIVERSITY OF MEDICAL SCIENCES   (Iran)

^b AHVAZ JUNDISHAPUR UNIVERSITY OF MEDICAL SCIENCES   (Iran)

^c SCIENTIFIC INSTITUTE OF PUBLIC HEALTH   (Belgium)

^d KERMANSHAH UNIVERSITY OF MEDICAL SCIENCES   (Iran)

^e MINISTRY OF HEALTH AND MEDICAL EDUCATION   (Iran)

^f MASHHAD UNIVERSITY OF MEDICAL SCIENCES   (Iran)

Author keywords

Diagnostic value; IS6110, sputum; Loop mediated isothermal amplification; Mycobacterium tuberculosis complex

Indexed keywords

ARTICLE; BACTERIUM CULTURE; BACTERIUM DETECTION; CONTROLLED STUDY; CROSS-SECTIONAL STUDY; DIAGNOSTIC TEST ACCURACY STUDY; DIAGNOSTIC VALUE; HUMAN; INTERMETHOD COMPARISON; IS6110 BASED LOOP MEDIATED ISOTHERMAL AMPLIFICATION; LUNG TUBERCULOSIS; MAJOR CLINICAL STUDY; MOLECULAR DIAGNOSIS; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; NUCLEIC ACID AMPLIFICATION; POLYMERASE CHAIN REACTION; PREDICTIVE VALUE; SENSITIVITY AND SPECIFICITY; SPUTUM CULTURE;

CROSS-SECTIONAL STUDIES; HUMANS; MOLECULAR TYPING; MYCOBACTERIUM TUBERCULOSIS; NUCLEIC ACID AMPLIFICATION TECHNIQUES; REPRODUCIBILITY OF RESULTS; SENSITIVITY AND SPECIFICITY; SPUTUM; TUBERCULOSIS, PULMONARY;

EID: 84876844781     PISSN: 01634453     EISSN: 15322742     Source Type: Journal    
DOI: 10.1016/j.jinf.2013.02.005     Document Type: Article

References (21)

1. Floyd K. Global tuberculosis report 2012 (WHO/HTM/TB/2012.6) 2012, World Health Organization, Geneva.
2. Gillespie S.H. Mycobacterium tuberculosis. Principles and practice of clinical bacteriology 2006, 159-169. John Wiley & Sons Ltd, Chichester. 2nd ed. S.H. Gillespie, P.M. Hawkey (Eds.).
3. Shamputa I.C., Rigouts, Portaels F. Molecular genetic methods for diagnosis and antibiotic resistance detection of mycobacteria from clinical specimens. APMIS 2004, 112:728-752.
4. Boehme C.C., Nabeta P., Henostroza G., Raqib R., Rahim Z., Gerhardt M., et al. Operational feasibility of using loop-mediated isothermal amplification for diagnosis of pulmonary tuberculosis in microscopy centers of developing countries. J Clin Microbiol 2007, 45:1936-1940.
5. Iwamoto T., Sonobe T., Hayashi K. Loop-mediated isothermal amplification for direct detection of Mycobacterium tuberculosis complex, M. avium, and M. intracellulare in sputum samples. J Clin Microbiol 2003, 41:2616-2622.
6. Lee M.F., Chen Y.H., Peng C.F. Evaluation of reverse transcription loop-mediated isothermal amplification in conjunction with ELISA-hybridization assay for molecular detection of Mycobacterium tuberculosis. J Microbiol Methods 2009, 76:174-180.
7. Pandey B.D., Poudel A., Yoda T., Tamaru A., Oda N., Fukushima Y., et al. Development of an in-house loop-mediated isothermal amplification (LAMP) assay for detection of Mycobacterium tuberculosis and evaluation in sputum samples of Nepalese patients. J Med Microbiol 2008, 57:439-443.
8. Zhu R.Y., Zhang K.X., Zhao M.Q., Liu Y.H., Xu Y.Y., Ju C.M., et al. Use of visual loop-mediated isotheral amplification of rimM sequence for rapid detection of Mycobacterium tuberculosis and Mycobacterium bovis. J Microbiol Methods 2009, 78:339-343.
9. Geojith G., Dhanasekaran S., Chandran S.P., Kenneth J. Efficacy of loop mediated isothermal amplification (LAMP) assay for the laboratory identification of Mycobacterium tuberculosis isolates in a resource limited setting. J Microbiol Methods 2011, 84:71-73.
10. Nagdev K.J., Kashyap R.S., Parida M.M., Kapgate R.C., Purohit H.J., Taori G.M., et al. Loop-mediated isothermal amplification for rapid and reliable diagnosis of tuberculous meningitis. J Clin Microbiol 2011, 49:1861-1865.
11. George G., Mony P., Kenneth J. Comparison of the efficacies of loop-mediated isothermal amplification, fluorescence smear microscopy and culture for the diagnosis of tuberculosis. PLoS One 2011, 6:e21007.
12. Aryan E., Makvandi M., Farajzadeh A., Huygen K., Bifani P., Mousavi S.L., et al. A novel and more sensitive loop-mediated isothermal amplification assay targeting IS6110 for detection of Mycobacterium tuberculosis complex. Microbiol Res 2010, 165:211-220.
13. Notomi T., Okayama H., Masubuchi H., Yonekawa T., Watanabe K., Amino N., et al. Loop-mediated isothermal amplification of DNA. Nucleic Acids Res 2000, 28:E63.
14. Pfyffer G.E., Brown-Elliott B.A., Wallace R.J. Mycobacterium: general characteristics, isolation, and staining procedures. Mannual of clinical microbiology 2003, 535-559. ASM Press, Washington, DC. 8th ed. P.R. Murray (Ed.).
15. Eisenach K.D., Cave M.D., Bates J.H., Crawford J.T. Polymerase chain reaction amplification of a repetitive DNA sequence specific for Mycobacterium tuberculosis. J Infect Dis 1990, 161:977-981.
16. Wilson S.M., McNerney R., Nye P.M., Godfrey-Faussett P.D., Stoker N.G., Voller A. Progress toward a simplified polymerase chain reaction and its application to diagnosis of tuberculosis. J Clin Microbiol 1993, 31:776-782.
17. Bearinger J.P., Dugan L.C., Baker B.R., Hall S.B., Ebert K., Mioulet V., et al. Development and initial results of a low cost, disposable, point-of-care testing device for pathogen detection. IEEE Trans Biomed Eng 2011, 58:805-808.
18. Kaneko H., Kawana T., Fukushima E., Suzutani T. Tolerance of loop-mediated isothermal amplification to a culture medium and biological substances. J Biochem Biophys Methods 2007, 70:499-501.
19. Mitarai S., Okumura M., Toyota E., Yoshiyama T., Aono A., Sejimo A., et al. Evaluation of a simple loop-mediated isothermal amplification test kit for the diagnosis of tuberculosis. Int J Tuberc Lung Dis 2011, 15:1211-1217. [i].
20. Bi A., Nakajima C., Fukushima Y., Tamaru A., Sugawara I., Kimura A., et al. A rapid loop-mediated isothermal amplification assay targeting hspX for the detection of Mycobacterium tuberculosis complex. Jpn J Infect Dis 2012, 65:247-251.
21. Yang B., Wang X., Li H., Li G., Cao Z., Cheng X. Comparison of loop-mediated isothermal amplification and real-time PCR for the diagnosis of tuberculous pleurisy. Lett Appl Microbiol 2011, 53:525-531.