메뉴 건너뛰기




Volumn 93, Issue 3, 2013, Pages 203-205

Slowing PCR ramp speed reduces chimera formation from environmental samples

Author keywords

Chimera detection; Chimera formation; Environmental samples; PCR temperatures

Indexed keywords

ANIMAL TISSUE; ARTICLE; CHIMERA; FISH; MICROBIAL COMMUNITY; MICROBIAL DIVERSITY; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SPECIES RICHNESS; TEMPERATURE SENSITIVITY;

EID: 84876833447     PISSN: 01677012     EISSN: 18728359     Source Type: Journal    
DOI: 10.1016/j.mimet.2013.03.013     Document Type: Article
Times cited : (36)

References (17)
  • 1
    • 29144504177 scopus 로고    scopus 로고
    • At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies
    • Ashelford K.E., Chuzhanova N.A., Fry J.C., Weightman A.J. At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies. Appl. Environ. Microbiol. 2005, 71:7724-7736.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 7724-7736
    • Ashelford, K.E.1    Chuzhanova, N.A.2    Fry, J.C.3    Weightman, A.J.4
  • 4
    • 0024444791 scopus 로고
    • Isolation and direct complete nucleotide determination of entire genes: characterization of gene coding for 16S ribosomal RNA
    • Edwards U., Rogall T., Blocker H., Emde M., Bottger E.C. Isolation and direct complete nucleotide determination of entire genes: characterization of gene coding for 16S ribosomal RNA. Nucleic Acids Res. 1989, 17:7843-7853.
    • (1989) Nucleic Acids Res. , vol.17 , pp. 7843-7853
    • Edwards, U.1    Rogall, T.2    Blocker, H.3    Emde, M.4    Bottger, E.C.5
  • 7
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. 1999, 41:95-98.
    • (1999) Nucleic Acids Symp. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 8
    • 5044240973 scopus 로고    scopus 로고
    • Bellerophon: a program to detect chimeric sequences in multiple sequence alignments
    • Huber T., Faulkner G., Hugenholtz P. Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 2004, 20:2317-2319.
    • (2004) Bioinformatics , vol.20 , pp. 2317-2319
    • Huber, T.1    Faulkner, G.2    Hugenholtz, P.3
  • 9
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • John Wiley and Sons, Chichester, England, E. Stackebrandt, M. Goodfellow (Eds.)
    • Lane D.J. 16S/23S rRNA sequencing. Nucleic Acid Techniques in Bacterial Systematics 1991, 115-175. John Wiley and Sons, Chichester, England. E. Stackebrandt, M. Goodfellow (Eds.).
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 10
  • 11
    • 85016734466 scopus 로고
    • The design and optimization of the PCR
    • Stockton Press, New York, NY, H.A. Erlich (Ed.)
    • Saiki R.K. The design and optimization of the PCR. PCR Technology 1989, 7-16. Stockton Press, New York, NY. H.A. Erlich (Ed.).
    • (1989) PCR Technology , pp. 7-16
    • Saiki, R.K.1
  • 15
    • 0036566806 scopus 로고    scopus 로고
    • Heteroduplexes in mixed-template amplifications: formation, consequence and elimination by 'reconditioning PCR'
    • Thompson J.R., Marcelino L.A., Polz M.F. Heteroduplexes in mixed-template amplifications: formation, consequence and elimination by 'reconditioning PCR'. Nucleic Acids Res. 2002, 30:2083-2088.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 2083-2088
    • Thompson, J.R.1    Marcelino, L.A.2    Polz, M.F.3
  • 16
    • 0029972052 scopus 로고    scopus 로고
    • The frequency of chimeric molecules as a consequence of PCR co-amplification of 16s rRNA genes from different bacterial species
    • Wang G.C.Y., Wang Y. The frequency of chimeric molecules as a consequence of PCR co-amplification of 16s rRNA genes from different bacterial species. Microbiology 1996, 142:1107-1114.
    • (1996) Microbiology , vol.142 , pp. 1107-1114
    • Wang, G.C.Y.1    Wang, Y.2
  • 17
    • 0345195995 scopus 로고    scopus 로고
    • Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis
    • Wintzingerode F.V., Göbel U.B., Stackebrandt E. Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol. Rev. 1997, 21:213-229.
    • (1997) FEMS Microbiol. Rev. , vol.21 , pp. 213-229
    • Wintzingerode, F.V.1    Göbel, U.B.2    Stackebrandt, E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.